Wall clock time and date at job start Tue Mar 31 2020 18:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.47203 * 109.47255 * 240.00227 * 2 1 3 5 5 C 2.64604 * 109.47002 * 240.00205 * 2 1 3 6 6 C 4.07798 * 109.47130 * 240.00192 * 2 1 3 7 7 O 1.21616 * 120.00366 * 59.14883 * 6 5 4 8 8 N 1.34779 * 119.99938 * 239.14337 * 6 5 4 9 9 C 1.46934 * 120.62983 * 0.02562 * 8 6 5 10 10 C 1.53190 * 108.77486 * 126.36663 * 9 8 6 11 11 C 1.53037 * 109.31458 * 54.63233 * 10 9 8 12 12 H 1.09000 * 109.46002 * 58.65690 * 11 10 9 13 13 N 1.46901 * 109.46350 * 178.62509 * 11 10 9 14 14 C 1.46896 * 111.00249 * 275.00384 * 13 11 10 15 15 C 1.50697 * 109.47214 * 179.97438 * 14 13 11 16 16 O 1.21295 * 119.99777 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00190 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00070 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00435 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99844 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00031 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99774 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47070 * 60.00287 * 22 20 18 24 24 H 1.48502 * 109.47016 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47202 * 300.00076 * 22 20 18 26 26 C 1.53038 * 109.53941 * 298.63879 * 11 10 9 27 27 H 1.09009 * 109.49855 * 181.35058 * 26 11 10 28 28 C 1.53003 * 109.49493 * 301.40895 * 26 11 10 29 29 C 1.46921 * 120.63372 * 179.72226 * 8 6 5 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 32 32 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 35 35 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 36 36 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 37 37 H 1.08995 * 109.58571 * 246.15022 * 9 8 6 38 38 H 1.09000 * 109.58262 * 6.43477 * 9 8 6 39 39 H 1.08996 * 109.49759 * 174.58936 * 10 9 8 40 40 H 1.09003 * 109.49676 * 294.68346 * 10 9 8 41 41 H 1.00895 * 111.00262 * 151.04684 * 13 11 10 42 42 H 1.08994 * 109.47447 * 299.99700 * 14 13 11 43 43 H 1.09006 * 109.47025 * 59.99804 * 14 13 11 44 44 H 0.97003 * 119.99920 * 359.97438 * 17 15 14 45 45 H 0.97002 * 119.99572 * 180.02562 * 21 20 18 46 46 H 1.08990 * 109.47060 * 60.00265 * 28 26 11 47 47 H 1.09000 * 109.46938 * 180.02562 * 28 26 11 48 48 H 1.09003 * 109.47108 * 300.00232 * 28 26 11 49 49 H 1.09007 * 109.58540 * 353.42369 * 29 8 6 50 50 H 1.08997 * 109.59097 * 113.84185 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2019 5 6 2.4120 -1.2473 -2.1605 6 6 2.8893 -1.9223 -3.3297 7 8 2.2248 -1.9180 -4.3483 8 7 4.0752 -2.5622 -3.3014 9 6 4.8891 -2.5765 -2.0782 10 6 5.2233 -4.0293 -1.7254 11 6 5.8859 -4.7030 -2.9292 12 1 6.7888 -4.1558 -3.2001 13 7 6.2376 -6.0868 -2.5834 14 6 7.5426 -6.1461 -1.9116 15 6 7.8684 -7.5778 -1.5726 16 8 7.0902 -8.4619 -1.8626 17 7 9.0244 -7.8760 -0.9471 18 6 9.3210 -9.1786 -0.6392 19 1 8.6282 -9.9658 -0.8974 20 6 10.5131 -9.4860 0.0051 21 7 11.3564 -8.5282 0.3188 22 14 10.9170 -11.2608 0.4254 23 1 10.9650 -12.0661 -0.8214 24 1 12.2365 -11.3209 1.1040 25 1 9.8708 -11.8063 1.3270 26 6 4.9160 -4.7043 -4.1130 27 1 5.3796 -5.2056 -4.9627 28 6 3.6341 -5.4424 -3.7220 29 6 4.5755 -3.2643 -4.4911 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1299 1.4426 -0.0005 37 1 5.8111 -2.0200 -2.2463 38 1 4.3299 -2.1193 -1.2619 39 1 5.9058 -4.0496 -0.8758 40 1 4.3071 -4.5615 -1.4693 41 1 6.2245 -6.6782 -3.4007 42 1 8.3104 -5.7453 -2.5732 43 1 7.5072 -5.5553 -0.9962 44 1 9.6469 -7.1690 -0.7156 45 1 12.1888 -8.7430 0.7683 46 1 3.1702 -4.9402 -2.8732 47 1 2.9438 -5.4435 -4.5656 48 1 3.8752 -6.4698 -3.4490 49 1 3.8085 -3.2631 -5.2657 50 1 5.4713 -2.7651 -4.8603 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496341933.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:35 Heat of formation + Delta-G solvation = -50.820696 kcal Electronic energy + Delta-G solvation = -28486.039562 eV Core-core repulsion = 24513.215172 eV Total energy + Delta-G solvation = -3972.824390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.57965 -40.18149 -39.18720 -37.34440 -36.37932 -35.78302 -34.09161 -33.24257 -32.67801 -32.07419 -28.53622 -28.17960 -28.06618 -26.48042 -25.22370 -24.37344 -23.45142 -22.19260 -21.08372 -20.03723 -19.83118 -19.07074 -17.98032 -17.49880 -16.93742 -16.78998 -16.60536 -16.37352 -16.18771 -15.65339 -15.54040 -15.36941 -15.33885 -15.16650 -14.63379 -14.38146 -14.27443 -13.89014 -13.71284 -13.48387 -13.30230 -13.10984 -12.99541 -12.90184 -12.79850 -12.71169 -12.48247 -12.43462 -12.41450 -12.32843 -12.17747 -12.12218 -11.70990 -11.49587 -11.43972 -11.35356 -11.32931 -11.05467 -10.31605 -10.00282 -9.81672 -9.28128 -8.45790 -5.94169 0.45094 1.21341 1.40134 1.42121 1.52718 1.86821 2.07559 2.29532 2.40936 2.89374 2.96922 3.21756 3.48329 3.64279 3.72644 3.94531 4.03560 4.06516 4.11170 4.16921 4.22586 4.31242 4.40702 4.45697 4.48836 4.53848 4.60659 4.65762 4.69838 4.75084 4.77508 4.78202 4.92081 4.92572 4.94572 5.04867 5.09789 5.12374 5.28323 5.31402 5.34342 5.38142 5.41747 5.49358 5.92524 6.13937 6.16047 6.18361 6.43152 6.61789 6.88756 7.14021 7.58279 8.13957 8.71246 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016626 B = 0.002010 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.676087 B =13923.886097 C =14888.123415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.003 3.997 3 C -0.143 4.143 4 C -0.046 4.046 5 C -0.268 4.268 6 C 0.631 3.369 7 O -0.573 6.573 8 N -0.590 5.590 9 C 0.112 3.888 10 C -0.122 4.122 11 C 0.095 3.905 12 H 0.065 0.935 13 N -0.675 5.675 14 C 0.067 3.933 15 C 0.437 3.563 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.273 1.273 26 C -0.101 4.101 27 H 0.096 0.904 28 C -0.134 4.134 29 C 0.121 3.879 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.123 0.877 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.345 0.655 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.044 0.956 47 H 0.049 0.951 48 H 0.054 0.946 49 H 0.086 0.914 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.493 22.231 -0.890 26.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 C -0.201 4.201 4 C -0.049 4.049 5 C -0.271 4.271 6 C 0.421 3.579 7 O -0.454 6.454 8 N -0.321 5.321 9 C -0.010 4.010 10 C -0.161 4.161 11 C -0.014 4.014 12 H 0.082 0.918 13 N -0.308 5.308 14 C -0.065 4.065 15 C 0.225 3.775 16 O -0.511 6.511 17 N -0.211 5.211 18 C -0.463 4.463 19 H 0.095 0.905 20 C -0.213 4.213 21 N -0.560 5.560 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.198 1.198 26 C -0.120 4.120 27 H 0.114 0.886 28 C -0.192 4.192 29 C -0.001 4.001 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.141 0.859 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.165 0.835 42 H 0.086 0.914 43 H 0.122 0.878 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.104 0.896 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.473 21.623 -0.951 26.037 hybrid contribution 1.156 -0.784 -0.525 1.492 sum -13.317 20.839 -1.476 24.775 Atomic orbital electron populations 1.21876 0.92225 1.02690 1.03643 1.18866 0.96783 0.95929 0.89880 1.21847 1.01798 0.92794 1.03622 1.23446 0.94840 0.92299 0.94301 1.20590 1.05079 1.04717 0.96732 1.14976 0.80728 0.77866 0.84335 1.90801 1.57834 1.63165 1.33630 1.47984 1.18554 1.50908 1.14668 1.21935 0.96070 0.97219 0.85788 1.21942 1.01594 0.94219 0.98362 1.21566 0.97122 0.88321 0.94405 0.91753 1.60086 1.28961 1.09344 1.32383 1.21575 0.91477 0.92381 1.01092 1.20947 0.82171 0.92031 0.82355 1.90498 1.50565 1.50899 1.59120 1.41926 1.18254 1.08622 1.52287 1.19608 1.04181 0.85471 1.37083 0.90461 1.26014 0.95119 1.03701 0.96438 1.69659 1.10973 1.34034 1.41347 0.85014 0.77677 0.77282 0.78517 1.19790 1.19467 1.19821 1.21562 0.96540 0.95659 0.98239 0.88550 1.21687 0.96561 1.00360 1.00562 1.21680 1.00611 0.90997 0.86818 0.92703 0.88779 0.92798 0.85893 0.92804 0.88897 0.91871 0.88557 0.88963 0.89743 0.92054 0.83549 0.91435 0.87757 0.76935 0.91311 0.93712 0.93210 0.92705 0.89558 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.15 71.98 0.66 -0.62 16 2 C 0.00 0.03 3.30 -12.60 -0.04 -0.01 16 3 C -0.14 -1.00 9.15 71.98 0.66 -0.34 16 4 C -0.05 -0.81 12.50 31.13 0.39 -0.42 16 5 C -0.27 -6.11 11.57 30.01 0.35 -5.76 16 6 C 0.63 16.50 7.55 85.49 0.65 17.14 16 7 O -0.57 -19.04 16.50 -4.08 -0.07 -19.11 16 8 N -0.59 -12.11 2.42 -828.77 -2.00 -14.11 16 9 C 0.11 1.80 6.33 86.36 0.55 2.34 16 10 C -0.12 -2.40 5.25 30.67 0.16 -2.24 16 11 C 0.10 1.99 2.15 44.94 0.10 2.08 16 12 H 0.06 1.15 7.80 -2.39 -0.02 1.13 16 13 N -0.67 -19.69 5.25 -495.46 -2.60 -22.29 16 14 C 0.07 2.14 5.96 85.56 0.51 2.65 16 15 C 0.44 20.26 7.82 87.66 0.69 20.95 16 16 O -0.62 -34.18 15.78 -3.08 -0.05 -34.23 16 17 N -0.57 -28.87 5.29 -306.99 -1.62 -30.49 16 18 C -0.33 -18.81 9.68 84.04 0.81 -17.99 16 19 H 0.08 4.66 7.16 -2.91 -0.02 4.63 16 20 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 21 N -0.92 -48.96 13.05 21.66 0.28 -48.68 16 22 Si 0.99 42.66 29.55 68.60 2.03 44.69 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 C -0.10 -1.99 2.58 -10.87 -0.03 -2.02 16 27 H 0.10 1.73 8.10 -2.38 -0.02 1.71 16 28 C -0.13 -3.24 8.55 71.98 0.62 -2.63 16 29 C 0.12 2.27 5.78 86.21 0.50 2.77 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.39 6.31 -2.39 -0.02 1.37 16 39 H 0.08 1.58 7.43 -2.39 -0.02 1.56 16 40 H 0.06 1.46 6.34 -2.39 -0.02 1.45 16 41 H 0.34 10.81 7.95 -89.70 -0.71 10.09 16 42 H 0.07 1.86 8.05 -2.39 -0.02 1.84 16 43 H 0.10 2.96 7.42 -2.38 -0.02 2.94 16 44 H 0.40 18.83 7.90 -92.71 -0.73 18.10 16 45 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 46 H 0.04 1.16 5.97 -2.39 -0.01 1.14 16 47 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.05 1.51 7.58 -2.39 -0.02 1.49 16 49 H 0.09 1.88 7.00 -2.38 -0.02 1.86 16 50 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -73.74 406.71 2.51 -71.23 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: -0.48 Total: 37.31 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 7.02 Total: 15.69 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -5.95 Total: -115.58 kcal Atomic # 8 Polarization: -53.23 SS G_CDS: -0.12 Total: -53.34 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -73.74 2.51 -71.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496341933.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.413 kcal (2) G-P(sol) polarization free energy of solvation -73.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds