Wall clock time and date at job start Tue Mar 31 2020 18:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08990 * 109.47896 * 2 1 4 4 C 1.50705 * 109.46825 * 120.00241 * 2 1 3 5 5 O 1.21281 * 119.99847 * 119.99592 * 4 2 1 6 6 N 1.34776 * 120.00139 * 299.99525 * 4 2 1 7 7 C 1.49185 * 126.16082 * 359.45639 * 6 4 2 8 8 C 1.53762 * 105.41731 * 210.75830 * 7 6 4 9 9 H 1.09002 * 112.04059 * 104.99605 * 8 7 6 10 10 C 1.54302 * 109.07707 * 229.64576 * 8 7 6 11 11 N 1.48528 * 104.69195 * 137.37310 * 10 8 7 12 12 C 1.46896 * 111.00338 * 200.77200 * 11 10 8 13 13 C 1.50698 * 109.47575 * 169.99808 * 12 11 10 14 14 O 1.21299 * 119.99871 * 359.97438 * 13 12 11 15 15 N 1.34769 * 120.00599 * 179.97438 * 13 12 11 16 16 C 1.37096 * 120.00585 * 179.97438 * 15 13 12 17 17 H 1.08006 * 119.99801 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00041 * 179.97438 * 16 15 13 19 19 N 1.31415 * 119.99965 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00291 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47303 * 89.99915 * 20 18 16 22 22 H 1.48502 * 109.47231 * 210.00225 * 20 18 16 23 23 H 1.48503 * 109.46783 * 329.99632 * 20 18 16 24 24 C 1.48530 * 104.20385 * 320.31893 * 11 10 8 25 25 C 1.54299 * 104.69195 * 39.68148 * 24 11 10 26 26 H 1.08994 * 112.05413 * 97.98777 * 25 24 11 27 27 C 1.47205 * 126.70514 * 180.02562 * 6 4 2 28 28 C 1.53001 * 109.46917 * 239.99726 * 2 1 3 29 29 C 1.53001 * 117.49914 * 128.62555 * 28 2 1 30 30 C 1.53001 * 60.00020 * 252.51021 * 29 28 2 31 31 H 1.09009 * 109.46705 * 300.00438 * 1 2 3 32 32 H 1.09005 * 109.46892 * 59.99369 * 1 2 3 33 33 H 1.08990 * 109.47896 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.17477 * 92.54503 * 7 6 4 35 35 H 1.09003 * 111.90962 * 330.40249 * 7 6 4 36 36 H 1.09003 * 110.39295 * 256.16553 * 10 8 7 37 37 H 1.08995 * 110.39655 * 18.45151 * 10 8 7 38 38 H 1.09005 * 109.47065 * 289.99486 * 12 11 10 39 39 H 1.09002 * 109.47458 * 49.99199 * 12 11 10 40 40 H 0.97003 * 119.99622 * 359.97438 * 15 13 12 41 41 H 0.96999 * 120.00315 * 179.97438 * 19 18 16 42 42 H 1.09001 * 110.39092 * 158.48323 * 24 11 10 43 43 H 1.08997 * 110.39158 * 280.75987 * 24 11 10 44 44 H 1.09003 * 110.06654 * 29.47814 * 27 6 4 45 45 H 1.08993 * 110.06700 * 267.94865 * 27 6 4 46 46 H 1.09000 * 115.55348 * 274.33268 * 28 2 1 47 47 H 1.08999 * 117.49926 * 0.02562 * 29 28 2 48 48 H 1.08999 * 117.50013 * 145.01881 * 29 28 2 49 49 H 1.08995 * 117.49832 * 252.50634 * 30 29 28 50 50 H 1.08996 * 117.49396 * 107.48811 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0322 -0.7105 1.2305 5 8 2.7294 -1.6966 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 0.8719 0.9505 2.7502 8 6 1.4058 1.5016 4.0827 9 1 2.0052 2.4012 3.9426 10 6 0.2203 1.7390 5.0414 11 7 0.6920 1.2340 6.3562 12 6 -0.4406 0.9320 7.2415 13 6 0.0562 0.1986 8.4606 14 8 1.2377 -0.0487 8.5800 15 7 -0.8121 -0.1825 9.4182 16 6 -0.3602 -0.8502 10.5271 17 1 0.6917 -1.0712 10.6330 18 6 -1.2555 -1.2427 11.5145 19 7 -0.8222 -1.8822 12.5777 20 14 -3.0749 -0.8612 11.3310 21 1 -3.7468 -1.9815 10.6249 22 1 -3.6823 -0.6877 12.6750 23 1 -3.2418 0.3891 10.5473 24 6 1.4501 0.0011 6.0223 25 6 2.2192 0.3520 4.7315 26 1 3.2500 0.6419 4.9354 27 6 2.1134 -0.8244 3.7475 28 6 2.0399 -0.7213 -1.2492 29 6 3.0741 0.0050 -2.1117 30 6 1.6357 -0.1496 -2.6096 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5140 -0.8900 33 1 -0.3634 -1.0275 -0.0005 34 1 -0.1683 0.6446 2.8618 35 1 0.9581 1.7078 1.9709 36 1 -0.0107 2.8024 5.1039 37 1 -0.6545 1.1799 4.7095 38 1 -0.9206 1.8617 7.5473 39 1 -1.1606 0.3089 6.7108 40 1 -1.7569 0.0156 9.3229 41 1 -1.4471 -2.1559 13.2672 42 1 2.1461 -0.2456 6.8240 43 1 0.7662 -0.8290 5.8453 44 1 3.0801 -1.3184 3.6498 45 1 1.3629 -1.5350 4.0937 46 1 2.1266 -1.8045 -1.1642 47 1 3.3915 0.9965 -1.7889 48 1 3.8415 -0.6003 -2.5941 49 1 1.4568 -0.8566 -3.4196 50 1 1.0065 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501214590.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:18 Heat of formation + Delta-G solvation = -48.711144 kcal Electronic energy + Delta-G solvation = -29281.785628 eV Core-core repulsion = 25309.052714 eV Total energy + Delta-G solvation = -3972.732913 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.77790 -40.67761 -39.72425 -38.13356 -36.83061 -35.89774 -33.84773 -33.64926 -32.30699 -31.56700 -28.91331 -27.02878 -26.69465 -25.87363 -24.33042 -23.14096 -22.49105 -21.77446 -21.26547 -20.73093 -20.21511 -19.87731 -18.39909 -17.68731 -17.22320 -16.96840 -16.87362 -16.55364 -16.08890 -15.99104 -15.71274 -15.31778 -15.22673 -15.02052 -14.64396 -14.53810 -14.21091 -14.12128 -13.74865 -13.53512 -13.31349 -13.18379 -13.06081 -12.96674 -12.89521 -12.64076 -12.43385 -12.39205 -12.27113 -11.98866 -11.94996 -11.90263 -11.80392 -11.58487 -11.45918 -11.28355 -10.93307 -10.74272 -10.30033 -10.22886 -9.81348 -9.34212 -8.41565 -6.02525 1.29671 1.35191 1.44404 1.57289 1.85527 1.94847 2.22797 2.69662 2.90156 3.11118 3.15164 3.34100 3.45639 3.63980 3.65316 3.83815 3.99174 4.02611 4.12724 4.13815 4.22165 4.26323 4.30873 4.34805 4.40512 4.46429 4.50847 4.55357 4.60649 4.72639 4.75226 4.78441 4.80716 4.88598 4.89974 4.96236 5.03848 5.10219 5.15330 5.26373 5.28219 5.30402 5.32636 5.36521 5.52684 5.85145 5.91509 6.07436 6.47571 6.59032 6.88467 7.09641 7.39089 7.96780 8.76025 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025564 B = 0.002103 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.017251 B =13310.511251 C =13423.158219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.064 4.064 3 H 0.120 0.880 4 C 0.527 3.473 5 O -0.592 6.592 6 N -0.618 5.618 7 C 0.106 3.894 8 C -0.093 4.093 9 H 0.115 0.885 10 C 0.038 3.962 11 N -0.509 5.509 12 C 0.044 3.956 13 C 0.447 3.553 14 O -0.607 6.607 15 N -0.590 5.590 16 C -0.327 4.327 17 H 0.054 0.946 18 C -0.017 4.017 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.258 1.258 22 H -0.276 1.276 23 H -0.228 1.228 24 C 0.046 3.954 25 C -0.093 4.093 26 H 0.091 0.909 27 C 0.114 3.886 28 C -0.158 4.158 29 C -0.185 4.185 30 C -0.155 4.155 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.125 0.875 39 H 0.081 0.919 40 H 0.390 0.610 41 H 0.279 0.721 42 H 0.069 0.931 43 H 0.033 0.967 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.084 0.916 47 H 0.104 0.896 48 H 0.088 0.912 49 H 0.098 0.902 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.274 12.383 -30.875 33.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 H 0.138 0.862 4 C 0.318 3.682 5 O -0.472 6.472 6 N -0.351 5.351 7 C -0.015 4.015 8 C -0.113 4.113 9 H 0.133 0.867 10 C -0.089 4.089 11 N -0.233 5.233 12 C -0.088 4.088 13 C 0.235 3.765 14 O -0.491 6.491 15 N -0.232 5.232 16 C -0.456 4.456 17 H 0.072 0.928 18 C -0.216 4.216 19 N -0.576 5.576 20 Si 0.785 3.215 21 H -0.183 1.183 22 H -0.201 1.201 23 H -0.151 1.151 24 C -0.083 4.083 25 C -0.114 4.114 26 H 0.109 0.891 27 C -0.010 4.010 28 C -0.177 4.177 29 C -0.222 4.222 30 C -0.192 4.192 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.137 0.863 36 H 0.127 0.873 37 H 0.083 0.917 38 H 0.143 0.857 39 H 0.099 0.901 40 H 0.225 0.775 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.051 0.949 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.102 0.898 47 H 0.123 0.877 48 H 0.106 0.894 49 H 0.117 0.883 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.828 11.957 -30.450 32.936 hybrid contribution -0.732 -1.483 0.814 1.844 sum -4.560 10.474 -29.635 31.761 Atomic orbital electron populations 1.21909 0.90795 1.02698 1.04729 1.20820 0.98715 1.00070 0.88897 0.86224 1.21068 0.78874 0.83946 0.84320 1.90678 1.40615 1.29134 1.86790 1.49165 1.51696 1.29823 1.04444 1.22998 0.94648 0.86618 0.97255 1.22732 0.96381 0.98469 0.93690 0.86700 1.23467 0.95955 1.02738 0.86754 1.65220 1.19914 1.26195 1.11986 1.22081 0.93518 1.01389 0.91779 1.20943 0.86335 0.83149 0.86111 1.90514 1.18537 1.60128 1.79931 1.42024 1.09366 1.52893 1.18947 1.18982 0.95315 1.33626 0.97682 0.92768 1.26144 1.05160 0.96014 0.94257 1.69811 1.37990 1.39574 1.10208 0.85359 0.76220 0.80590 0.79317 1.18282 1.20103 1.15134 1.23197 0.97296 0.91228 0.96537 1.22585 1.00596 0.94922 0.93248 0.89100 1.21965 1.00223 0.95773 0.83002 1.21976 1.05656 0.98762 0.91296 1.23108 0.93161 1.02069 1.03815 1.23065 0.97336 1.03526 0.95270 0.90086 0.89000 0.93592 0.89265 0.86264 0.87327 0.91717 0.85735 0.90149 0.77482 0.91190 0.91305 0.94914 0.92144 0.92049 0.89808 0.87736 0.89391 0.88312 0.86517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.82 71.98 0.63 -0.65 16 2 C -0.06 -0.87 2.21 -11.54 -0.03 -0.90 16 3 H 0.12 1.06 7.64 -2.39 -0.02 1.05 16 4 C 0.53 11.98 7.24 87.66 0.63 12.61 16 5 O -0.59 -19.48 15.88 -3.03 -0.05 -19.53 16 6 N -0.62 -12.14 3.35 -810.13 -2.72 -14.86 16 7 C 0.11 1.16 4.80 86.12 0.41 1.57 16 8 C -0.09 -1.38 4.02 -9.39 -0.04 -1.41 16 9 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 10 C 0.04 0.60 6.02 86.43 0.52 1.12 16 11 N -0.51 -14.01 5.33 -886.55 -4.73 -18.74 16 12 C 0.04 1.26 5.55 85.56 0.47 1.73 16 13 C 0.45 19.67 7.50 87.66 0.66 20.33 16 14 O -0.61 -32.79 13.24 -3.09 -0.04 -32.83 16 15 N -0.59 -27.38 5.09 -306.99 -1.56 -28.94 16 16 C -0.33 -19.04 10.16 84.04 0.85 -18.19 16 17 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 18 C -0.02 -0.96 5.50 84.92 0.47 -0.49 16 19 N -0.94 -56.47 13.96 21.66 0.30 -56.17 16 20 Si 0.97 38.31 27.74 68.60 1.90 40.22 16 21 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 22 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 23 H -0.23 -7.49 6.52 99.48 0.65 -6.84 16 24 C 0.05 1.41 4.86 86.43 0.42 1.83 16 25 C -0.09 -2.17 4.09 -9.40 -0.04 -2.20 16 26 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 27 C 0.11 2.77 6.57 86.49 0.57 3.34 16 28 C -0.16 -2.53 4.76 -10.79 -0.05 -2.58 16 29 C -0.18 -2.41 10.18 30.60 0.31 -2.10 16 30 C -0.16 -1.53 9.73 30.60 0.30 -1.24 16 31 H 0.08 0.49 5.15 -2.38 -0.01 0.47 16 32 H 0.09 0.44 7.29 -2.38 -0.02 0.42 16 33 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.09 0.78 6.49 -2.39 -0.02 0.76 16 35 H 0.12 0.54 7.09 -2.39 -0.02 0.52 16 36 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 0.83 6.84 -2.39 -0.02 0.81 16 38 H 0.12 2.87 8.14 -2.38 -0.02 2.86 16 39 H 0.08 1.88 7.88 -2.39 -0.02 1.86 16 40 H 0.39 14.80 5.76 -92.71 -0.53 14.27 16 41 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 42 H 0.07 2.83 6.04 -2.39 -0.01 2.82 16 43 H 0.03 1.04 7.01 -2.39 -0.02 1.02 16 44 H 0.06 1.70 7.92 -2.39 -0.02 1.68 16 45 H 0.06 1.60 7.10 -2.39 -0.02 1.58 16 46 H 0.08 1.87 7.47 -2.39 -0.02 1.86 16 47 H 0.10 1.11 8.05 -2.39 -0.02 1.09 16 48 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.12 0.66 7.61 -2.39 -0.02 0.64 16 Total: -1.00 -84.21 385.34 -0.43 -84.64 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: 0.36 Total: 33.44 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 6.10 Total: 12.77 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -8.71 Total: -118.71 kcal Atomic # 8 Polarization: -52.27 SS G_CDS: -0.09 Total: -52.36 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 1.90 Total: 40.22 kcal Total: -84.21 -0.43 -84.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501214590.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.925 kcal (2) G-P(sol) polarization free energy of solvation -84.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds