Wall clock time and date at job start Tue Mar 31 2020 18:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47114 * 120.00235 * 2 1 4 4 C 1.50698 * 119.99638 * 0.02562 * 3 2 1 5 5 C 1.32870 * 120.00496 * 179.97438 * 3 2 1 6 6 C 1.50694 * 120.00054 * 174.08444 * 5 3 2 7 7 C 1.50702 * 109.47409 * 234.28082 * 6 5 3 8 8 O 1.21278 * 119.99502 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00192 * 180.02562 * 7 6 5 10 10 C 1.47024 * 125.64750 * 0.02835 * 9 7 6 11 11 C 1.54316 * 107.39972 * 178.82714 * 10 9 7 12 12 H 1.09000 * 110.72102 * 219.52001 * 11 10 9 13 13 C 1.52999 * 110.72090 * 96.24797 * 11 10 9 14 14 C 1.55411 * 102.82900 * 337.97555 * 11 10 9 15 15 H 1.08994 * 110.88913 * 277.26232 * 14 11 10 16 16 N 1.46902 * 111.06881 * 153.48845 * 14 11 10 17 17 C 1.46900 * 110.99818 * 161.21115 * 16 14 11 18 18 C 1.50701 * 109.46704 * 179.97438 * 17 16 14 19 19 O 1.21287 * 120.00442 * 359.97438 * 18 17 16 20 20 N 1.34784 * 119.99504 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99608 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00345 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99720 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00104 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00228 * 359.97438 * 23 21 20 26 26 H 1.48507 * 109.46908 * 90.00486 * 25 23 21 27 27 H 1.48495 * 109.47238 * 210.00498 * 25 23 21 28 28 H 1.48500 * 109.46856 * 330.00860 * 25 23 21 29 29 C 1.47429 * 125.64709 * 179.97438 * 9 7 6 30 30 H 1.08006 * 120.00157 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.99925 * 0.02562 * 1 2 3 32 32 H 1.08000 * 119.99925 * 179.97438 * 2 1 3 33 33 H 1.09005 * 109.47108 * 265.15732 * 4 3 2 34 34 H 1.08995 * 109.47764 * 25.15683 * 4 3 2 35 35 H 1.09000 * 109.47547 * 145.16170 * 4 3 2 36 36 H 1.07996 * 119.99666 * 354.09361 * 5 3 2 37 37 H 1.09006 * 109.47068 * 114.28531 * 6 5 3 38 38 H 1.08994 * 109.47743 * 354.28763 * 6 5 3 39 39 H 1.08993 * 109.88043 * 298.31986 * 10 9 7 40 40 H 1.08997 * 109.88134 * 59.33342 * 10 9 7 41 41 H 1.08998 * 109.47501 * 61.45490 * 13 11 10 42 42 H 1.09008 * 109.46917 * 181.45289 * 13 11 10 43 43 H 1.09000 * 109.46917 * 301.45090 * 13 11 10 44 44 H 1.00898 * 111.00255 * 37.25085 * 16 14 11 45 45 H 1.08995 * 109.46959 * 299.99302 * 17 16 14 46 46 H 1.08993 * 109.47063 * 59.99864 * 17 16 14 47 47 H 0.96995 * 120.00484 * 0.02562 * 20 18 17 48 48 H 0.96997 * 120.00218 * 179.97438 * 24 23 21 49 49 H 1.08996 * 110.36367 * 323.00256 * 29 9 7 50 50 H 1.08995 * 110.36424 * 85.32265 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3108 2.5791 0.0006 5 6 3.3930 1.2741 0.0005 6 6 4.1465 2.5722 -0.1340 7 6 5.1165 2.4733 -1.2831 8 8 5.1884 1.4497 -1.9294 9 7 5.9040 3.5224 -1.5924 10 6 5.9201 4.8167 -0.8951 11 6 6.9934 5.6933 -1.5741 12 1 7.5457 6.2704 -0.8324 13 6 6.3587 6.6157 -2.6168 14 6 7.9145 4.6442 -2.2569 15 1 8.6366 4.2407 -1.5473 16 7 8.5938 5.2191 -3.4257 17 6 9.7662 4.4172 -3.8003 18 6 10.4352 5.0359 -5.0005 19 8 9.9800 6.0453 -5.4955 20 7 11.5396 4.4676 -5.5240 21 6 12.1486 5.0308 -6.6156 22 1 11.7432 5.9296 -7.0563 23 6 13.2868 4.4446 -7.1556 24 7 13.8708 4.9847 -8.2016 25 14 13.9876 2.8896 -6.3938 26 1 13.3722 1.7018 -7.0386 27 1 15.4580 2.8575 -6.5982 28 1 13.6894 2.8732 -4.9392 29 6 6.8926 3.5618 -2.6853 30 1 -0.5401 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8687 -0.9353 0.0004 33 1 1.2038 2.9374 -1.0233 34 1 0.3238 2.4286 0.4377 35 1 1.8597 3.3154 0.5876 36 1 3.9329 0.3438 0.0972 37 1 4.6938 2.7717 0.7873 38 1 3.4428 3.3831 -0.3213 39 1 4.9441 5.2947 -0.9782 40 1 6.1722 4.6689 0.1550 41 1 5.6481 7.2822 -2.1279 42 1 7.1365 7.2062 -3.1011 43 1 5.8393 6.0160 -3.3642 44 1 8.8516 6.1800 -3.2577 45 1 10.4682 4.3887 -2.9670 46 1 9.4499 3.4029 -4.0437 47 1 11.9035 3.6601 -5.1285 48 1 14.6656 4.5757 -8.5783 49 1 7.3847 2.5946 -2.7867 50 1 6.4116 3.8437 -3.6219 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502734569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:07 Heat of formation + Delta-G solvation = -28.809793 kcal Electronic energy + Delta-G solvation = -28234.033616 eV Core-core repulsion = 24262.163690 eV Total energy + Delta-G solvation = -3971.869926 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.50200 -38.79094 -38.11121 -37.09586 -34.87629 -33.88106 -32.86216 -32.30944 -31.65094 -29.75024 -28.63558 -27.21609 -26.71757 -26.12423 -24.03946 -22.66446 -21.37262 -19.92406 -19.57842 -19.27913 -18.35687 -18.19145 -17.48995 -16.79241 -16.27952 -15.89567 -15.42683 -15.33160 -15.21121 -14.72021 -14.58750 -14.28348 -13.91362 -13.77899 -13.61525 -13.37631 -13.21495 -13.04611 -12.89209 -12.66831 -12.56262 -12.43825 -12.18749 -11.99857 -11.91414 -11.89598 -11.80874 -11.28147 -11.21548 -11.15580 -10.99165 -10.85007 -10.75988 -10.59927 -10.04781 -9.98336 -9.58195 -8.86232 -8.63151 -8.55304 -8.27077 -8.18414 -6.31949 -3.83488 0.99246 2.43499 2.57291 2.86899 3.02128 3.07394 3.15246 3.71930 3.99615 4.08130 4.10023 4.27702 4.31237 4.49713 4.55867 4.66544 4.82036 4.84583 4.91124 4.92853 5.04073 5.05110 5.14121 5.18708 5.22802 5.26059 5.29725 5.33779 5.47849 5.52713 5.61327 5.62727 5.67383 5.73890 5.76242 5.85066 5.92170 6.00111 6.00886 6.07485 6.14210 6.30170 6.33802 6.59544 7.00846 7.28019 7.47455 7.56931 7.96538 8.13222 8.58394 8.93819 9.41372 9.80883 10.81056 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018880 B = 0.001933 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.660415 B =14482.145431 C =15452.242214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.115 4.115 3 C -0.109 4.109 4 C -0.124 4.124 5 C -0.120 4.120 6 C -0.112 4.112 7 C 0.531 3.469 8 O -0.536 6.536 9 N -0.619 5.619 10 C 0.106 3.894 11 C -0.103 4.103 12 H 0.089 0.911 13 C -0.137 4.137 14 C 0.076 3.924 15 H 0.059 0.941 16 N -0.653 5.653 17 C 0.046 3.954 18 C 0.450 3.550 19 O -0.565 6.565 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.116 3.884 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.357 0.643 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.371 0.629 48 H 0.273 0.727 49 H 0.075 0.925 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.738 -4.398 23.042 31.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.133 4.133 3 C -0.109 4.109 4 C -0.180 4.180 5 C -0.138 4.138 6 C -0.151 4.151 7 C 0.320 3.680 8 O -0.412 6.412 9 N -0.354 5.354 10 C -0.018 4.018 11 C -0.123 4.123 12 H 0.108 0.892 13 C -0.194 4.194 14 C -0.036 4.036 15 H 0.077 0.923 16 N -0.287 5.287 17 C -0.087 4.087 18 C 0.236 3.764 19 O -0.447 6.447 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.195 1.195 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.007 4.007 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.132 0.868 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.178 0.822 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.094 0.906 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.286 -4.616 21.743 31.476 hybrid contribution 1.485 -1.110 1.176 2.195 sum -20.801 -5.726 22.919 31.476 Atomic orbital electron populations 1.24417 0.95698 1.02057 1.00382 1.21858 0.95318 0.96075 1.00052 1.20558 0.93871 0.94433 1.02029 1.20904 1.00270 0.94505 1.02351 1.22772 0.93896 0.97728 0.99425 1.20768 0.98004 0.98538 0.97799 1.20164 0.80564 0.82015 0.85254 1.90732 1.68268 1.29250 1.52947 1.48447 1.39519 1.13754 1.33688 1.22141 0.99858 0.83581 0.96209 1.22397 0.95680 0.96014 0.98160 0.89236 1.21683 1.00910 0.98720 0.98111 1.22713 0.94879 0.94637 0.91342 0.92349 1.59991 1.27234 1.06383 1.35082 1.21793 0.91618 0.98418 0.96884 1.19650 0.82791 0.87078 0.86892 1.90563 1.64886 1.26053 1.63148 1.42207 1.25486 1.25903 1.29314 1.19430 1.08149 1.11446 1.04403 0.86252 1.25038 0.96601 0.98181 0.96286 1.69620 1.20613 1.39903 1.21912 0.86676 0.79737 0.83711 0.79279 1.19550 1.20182 1.19554 1.22251 0.88990 0.99256 0.90230 0.88128 0.88043 0.86771 0.91307 0.91391 0.91362 0.86324 0.88002 0.87985 0.90973 0.91334 0.92922 0.91074 0.91827 0.82156 0.93579 0.89402 0.79679 0.91599 0.90649 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.23 14.11 28.88 0.41 -0.83 16 2 C -0.12 -0.91 9.83 -37.83 -0.37 -1.28 16 3 C -0.11 -0.89 5.98 -102.87 -0.62 -1.50 16 4 C -0.12 -0.76 8.54 36.00 0.31 -0.45 16 5 C -0.12 -1.06 8.45 -36.16 -0.31 -1.36 16 6 C -0.11 -0.85 4.96 -29.04 -0.14 -0.99 16 7 C 0.53 6.12 7.84 -10.98 -0.09 6.04 16 8 O -0.54 -8.52 16.29 5.56 0.09 -8.43 16 9 N -0.62 -6.38 3.33 -170.54 -0.57 -6.95 16 10 C 0.11 0.75 6.06 -3.07 -0.02 0.73 16 11 C -0.10 -0.84 3.43 -88.65 -0.30 -1.14 16 12 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 13 C -0.14 -1.24 8.49 37.16 0.32 -0.92 16 14 C 0.08 0.81 3.11 -65.43 -0.20 0.61 16 15 H 0.06 0.60 7.92 -51.93 -0.41 0.19 16 16 N -0.65 -9.19 5.23 -105.59 -0.55 -9.74 16 17 C 0.05 0.72 6.04 -4.98 -0.03 0.69 16 18 C 0.45 9.99 7.82 -10.98 -0.09 9.90 16 19 O -0.56 -14.77 15.78 5.55 0.09 -14.68 16 20 N -0.59 -13.94 5.09 -10.96 -0.06 -14.00 16 21 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 22 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 23 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -25.70 13.96 55.50 0.77 -24.93 16 25 Si 0.88 19.43 27.74 -169.99 -4.71 14.71 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.27 -5.42 6.52 56.52 0.37 -5.06 16 29 C 0.12 1.40 6.24 -2.54 -0.02 1.39 16 30 H 0.10 0.53 8.06 -52.48 -0.42 0.11 16 31 H 0.10 0.57 6.06 -52.49 -0.32 0.26 16 32 H 0.11 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.35 6.20 -51.93 -0.32 0.03 16 35 H 0.07 0.33 6.70 -51.93 -0.35 -0.02 16 36 H 0.12 1.13 8.05 -52.49 -0.42 0.71 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.61 5.79 -51.93 -0.30 0.31 16 39 H 0.07 0.42 7.84 -51.93 -0.41 0.01 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.75 6.94 -51.92 -0.36 0.39 16 43 H 0.06 0.68 7.46 -51.93 -0.39 0.30 16 44 H 0.36 5.09 7.11 -39.29 -0.28 4.81 16 45 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 46 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.37 7.72 5.76 -40.82 -0.24 7.49 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 50 H 0.08 1.13 7.73 -51.93 -0.40 0.73 16 LS Contribution 405.05 15.07 6.10 6.10 Total: -1.00 -34.69 405.05 -8.20 -42.89 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -7.97 Total: 11.86 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -1.40 Total: 3.16 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.40 Total: -55.62 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.18 Total: -23.11 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.71 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.69 -8.20 -42.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502734569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.080 kcal (2) G-P(sol) polarization free energy of solvation -34.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds