Wall clock time and date at job start Tue Mar 31 2020 18:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47114 * 120.00235 * 2 1 4 4 C 1.50698 * 119.99638 * 0.02562 * 3 2 1 5 5 C 1.32870 * 120.00496 * 179.97438 * 3 2 1 6 6 C 1.50694 * 120.00054 * 174.08444 * 5 3 2 7 7 C 1.50702 * 109.47409 * 234.28082 * 6 5 3 8 8 O 1.21278 * 119.99502 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00192 * 180.02562 * 7 6 5 10 10 C 1.47024 * 125.64750 * 0.02835 * 9 7 6 11 11 C 1.54316 * 107.39972 * 178.82714 * 10 9 7 12 12 H 1.09000 * 110.72102 * 219.52001 * 11 10 9 13 13 C 1.52999 * 110.72090 * 96.24797 * 11 10 9 14 14 C 1.55411 * 102.82900 * 337.97555 * 11 10 9 15 15 H 1.08994 * 110.88913 * 277.26232 * 14 11 10 16 16 N 1.46902 * 111.06881 * 153.48845 * 14 11 10 17 17 C 1.46900 * 110.99818 * 161.21115 * 16 14 11 18 18 C 1.50701 * 109.46704 * 179.97438 * 17 16 14 19 19 O 1.21287 * 120.00442 * 359.97438 * 18 17 16 20 20 N 1.34784 * 119.99504 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99608 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00345 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99720 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00104 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00228 * 359.97438 * 23 21 20 26 26 H 1.48507 * 109.46908 * 90.00486 * 25 23 21 27 27 H 1.48495 * 109.47238 * 210.00498 * 25 23 21 28 28 H 1.48500 * 109.46856 * 330.00860 * 25 23 21 29 29 C 1.47429 * 125.64709 * 179.97438 * 9 7 6 30 30 H 1.08006 * 120.00157 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.99925 * 0.02562 * 1 2 3 32 32 H 1.08000 * 119.99925 * 179.97438 * 2 1 3 33 33 H 1.09005 * 109.47108 * 265.15732 * 4 3 2 34 34 H 1.08995 * 109.47764 * 25.15683 * 4 3 2 35 35 H 1.09000 * 109.47547 * 145.16170 * 4 3 2 36 36 H 1.07996 * 119.99666 * 354.09361 * 5 3 2 37 37 H 1.09006 * 109.47068 * 114.28531 * 6 5 3 38 38 H 1.08994 * 109.47743 * 354.28763 * 6 5 3 39 39 H 1.08993 * 109.88043 * 298.31986 * 10 9 7 40 40 H 1.08997 * 109.88134 * 59.33342 * 10 9 7 41 41 H 1.08998 * 109.47501 * 61.45490 * 13 11 10 42 42 H 1.09008 * 109.46917 * 181.45289 * 13 11 10 43 43 H 1.09000 * 109.46917 * 301.45090 * 13 11 10 44 44 H 1.00898 * 111.00255 * 37.25085 * 16 14 11 45 45 H 1.08995 * 109.46959 * 299.99302 * 17 16 14 46 46 H 1.08993 * 109.47063 * 59.99864 * 17 16 14 47 47 H 0.96995 * 120.00484 * 0.02562 * 20 18 17 48 48 H 0.96997 * 120.00218 * 179.97438 * 24 23 21 49 49 H 1.08996 * 110.36367 * 323.00256 * 29 9 7 50 50 H 1.08995 * 110.36424 * 85.32265 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3108 2.5791 0.0006 5 6 3.3930 1.2741 0.0005 6 6 4.1465 2.5722 -0.1340 7 6 5.1165 2.4733 -1.2831 8 8 5.1884 1.4497 -1.9294 9 7 5.9040 3.5224 -1.5924 10 6 5.9201 4.8167 -0.8951 11 6 6.9934 5.6933 -1.5741 12 1 7.5457 6.2704 -0.8324 13 6 6.3587 6.6157 -2.6168 14 6 7.9145 4.6442 -2.2569 15 1 8.6366 4.2407 -1.5473 16 7 8.5938 5.2191 -3.4257 17 6 9.7662 4.4172 -3.8003 18 6 10.4352 5.0359 -5.0005 19 8 9.9800 6.0453 -5.4955 20 7 11.5396 4.4676 -5.5240 21 6 12.1486 5.0308 -6.6156 22 1 11.7432 5.9296 -7.0563 23 6 13.2868 4.4446 -7.1556 24 7 13.8708 4.9847 -8.2016 25 14 13.9876 2.8896 -6.3938 26 1 13.3722 1.7018 -7.0386 27 1 15.4580 2.8575 -6.5982 28 1 13.6894 2.8732 -4.9392 29 6 6.8926 3.5618 -2.6853 30 1 -0.5401 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8687 -0.9353 0.0004 33 1 1.2038 2.9374 -1.0233 34 1 0.3238 2.4286 0.4377 35 1 1.8597 3.3154 0.5876 36 1 3.9329 0.3438 0.0972 37 1 4.6938 2.7717 0.7873 38 1 3.4428 3.3831 -0.3213 39 1 4.9441 5.2947 -0.9782 40 1 6.1722 4.6689 0.1550 41 1 5.6481 7.2822 -2.1279 42 1 7.1365 7.2062 -3.1011 43 1 5.8393 6.0160 -3.3642 44 1 8.8516 6.1800 -3.2577 45 1 10.4682 4.3887 -2.9670 46 1 9.4499 3.4029 -4.0437 47 1 11.9035 3.6601 -5.1285 48 1 14.6656 4.5757 -8.5783 49 1 7.3847 2.5946 -2.7867 50 1 6.4116 3.8437 -3.6219 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502734569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:06 Heat of formation + Delta-G solvation = -54.019241 kcal Electronic energy + Delta-G solvation = -28235.126780 eV Core-core repulsion = 24262.163690 eV Total energy + Delta-G solvation = -3972.963090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.33697 -40.30872 -39.24110 -37.73103 -36.24984 -35.60663 -33.77658 -33.51706 -33.08005 -30.53463 -29.43996 -28.20246 -27.50988 -27.09894 -25.65300 -23.57216 -21.99288 -21.31166 -20.74955 -20.42289 -20.01519 -18.78189 -18.31941 -17.68154 -17.44048 -17.01712 -16.94577 -16.45554 -16.09142 -16.00268 -15.58399 -15.20444 -15.05163 -14.83755 -14.55424 -14.45415 -14.32973 -14.02572 -13.99897 -13.75383 -13.61055 -13.35374 -13.24915 -13.12974 -12.99403 -12.88924 -12.52308 -12.42291 -12.31003 -12.03471 -11.96614 -11.76276 -11.72072 -11.55269 -11.52659 -11.39605 -10.94646 -10.44531 -10.25637 -9.69307 -9.39586 -9.12310 -8.42344 -6.03010 0.41726 1.28703 1.34510 1.42703 1.60819 1.86724 1.94257 2.20998 2.21670 2.72808 3.14031 3.30245 3.42811 3.58967 3.73823 3.86715 4.00418 4.02517 4.12136 4.26614 4.26811 4.33674 4.41047 4.42231 4.43789 4.53294 4.53939 4.59912 4.72016 4.76539 4.80587 4.88535 4.90725 4.95569 5.00037 5.07557 5.13626 5.22601 5.29252 5.47323 5.51369 5.55838 5.58972 5.78390 5.89131 6.01786 6.04003 6.35675 6.53314 6.58478 6.86948 7.13615 7.38667 7.94632 8.75146 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018880 B = 0.001933 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.660415 B =14482.145431 C =15452.242214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.145 4.145 3 C -0.108 4.108 4 C -0.125 4.125 5 C -0.144 4.144 6 C -0.098 4.098 7 C 0.524 3.476 8 O -0.592 6.592 9 N -0.616 5.616 10 C 0.103 3.897 11 C -0.095 4.095 12 H 0.117 0.883 13 C -0.134 4.134 14 C 0.080 3.920 15 H 0.076 0.924 16 N -0.669 5.669 17 C 0.060 3.940 18 C 0.450 3.550 19 O -0.611 6.611 20 N -0.592 5.592 21 C -0.329 4.329 22 H 0.057 0.943 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.963 3.037 26 H -0.261 1.261 27 H -0.274 1.274 28 H -0.231 1.231 29 C 0.115 3.885 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.051 0.949 43 H 0.038 0.962 44 H 0.355 0.645 45 H 0.082 0.918 46 H 0.103 0.897 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.057 0.943 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.769 -5.175 27.197 35.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.108 4.108 4 C -0.181 4.181 5 C -0.162 4.162 6 C -0.137 4.137 7 C 0.315 3.685 8 O -0.473 6.473 9 N -0.350 5.350 10 C -0.019 4.019 11 C -0.114 4.114 12 H 0.136 0.864 13 C -0.192 4.192 14 C -0.030 4.030 15 H 0.094 0.906 16 N -0.303 5.303 17 C -0.072 4.072 18 C 0.238 3.762 19 O -0.495 6.495 20 N -0.234 5.234 21 C -0.458 4.458 22 H 0.075 0.925 23 C -0.212 4.212 24 N -0.574 5.574 25 Si 0.783 3.217 26 H -0.185 1.185 27 H -0.199 1.199 28 H -0.154 1.154 29 C -0.009 4.009 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.177 0.823 45 H 0.099 0.901 46 H 0.121 0.879 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.340 -5.363 25.946 35.309 hybrid contribution 1.641 -0.776 -0.194 1.825 sum -21.699 -6.139 25.752 34.230 Atomic orbital electron populations 1.24655 0.95242 1.03218 0.97933 1.21999 0.96086 0.96174 1.02077 1.20840 0.93903 0.95453 1.00639 1.20976 1.00831 0.93666 1.02656 1.22767 0.94337 0.97842 1.01276 1.20763 0.97426 0.98417 0.97074 1.20945 0.80674 0.81285 0.85621 1.90704 1.69993 1.31510 1.55056 1.48525 1.38531 1.14838 1.33089 1.22417 1.00606 0.81570 0.97258 1.22432 0.95482 0.95426 0.98057 0.86447 1.21645 1.00681 0.98791 0.98070 1.22724 0.94874 0.95064 0.90372 0.90587 1.59901 1.26648 1.06294 1.37505 1.21678 0.92530 0.98381 0.94606 1.20910 0.81652 0.86031 0.87601 1.90542 1.65862 1.28260 1.64834 1.42049 1.26095 1.26668 1.28549 1.19015 1.09499 1.10619 1.06647 0.92490 1.26081 0.96253 1.02485 0.96421 1.69798 1.21407 1.42331 1.23837 0.85395 0.78469 0.77497 0.80355 1.18542 1.19870 1.15434 1.22086 0.89740 0.98795 0.90290 0.86994 0.86867 0.87390 0.91499 0.90380 0.89484 0.88268 0.85120 0.85794 0.88963 0.88025 0.90512 0.93024 0.94244 0.82287 0.90073 0.87876 0.77580 0.91152 0.92488 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 14.11 66.64 0.94 -1.05 16 2 C -0.15 -2.21 9.83 23.43 0.23 -1.98 16 3 C -0.11 -1.64 5.98 -18.71 -0.11 -1.75 16 4 C -0.13 -1.20 8.54 71.24 0.61 -0.59 16 5 C -0.14 -2.44 8.45 24.51 0.21 -2.23 16 6 C -0.10 -1.24 4.96 29.10 0.14 -1.10 16 7 C 0.52 11.50 7.84 87.66 0.69 12.18 16 8 O -0.59 -19.33 16.29 -3.02 -0.05 -19.38 16 9 N -0.62 -11.50 3.33 -811.85 -2.70 -14.20 16 10 C 0.10 1.03 6.06 86.73 0.53 1.55 16 11 C -0.10 -1.21 3.43 -9.52 -0.03 -1.25 16 12 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 13 C -0.13 -2.21 8.49 71.98 0.61 -1.60 16 14 C 0.08 1.54 3.11 46.39 0.14 1.68 16 15 H 0.08 1.26 7.92 -2.39 -0.02 1.24 16 16 N -0.67 -18.10 5.23 -487.99 -2.55 -20.65 16 17 C 0.06 1.81 6.04 85.56 0.52 2.32 16 18 C 0.45 20.11 7.82 87.66 0.69 20.80 16 19 O -0.61 -33.31 15.78 -3.05 -0.05 -33.35 16 20 N -0.59 -28.00 5.09 -306.98 -1.56 -29.57 16 21 C -0.33 -19.33 10.16 84.04 0.85 -18.48 16 22 H 0.06 3.98 7.39 -2.91 -0.02 3.96 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 24 N -0.93 -56.53 13.96 21.66 0.30 -56.22 16 25 Si 0.96 39.29 27.74 68.60 1.90 41.19 16 26 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 28 H -0.23 -7.91 6.52 99.48 0.65 -7.27 16 29 C 0.11 2.71 6.24 86.85 0.54 3.25 16 30 H 0.11 0.99 8.06 -2.91 -0.02 0.97 16 31 H 0.11 1.01 6.06 -2.91 -0.02 0.99 16 32 H 0.11 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.08 0.58 6.20 -2.39 -0.01 0.57 16 35 H 0.09 0.50 6.70 -2.39 -0.02 0.48 16 36 H 0.10 2.00 8.05 -2.91 -0.02 1.98 16 37 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.12 1.02 5.79 -2.39 -0.01 1.01 16 39 H 0.09 0.62 7.84 -2.39 -0.02 0.60 16 40 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.05 1.05 6.94 -2.38 -0.02 1.04 16 43 H 0.04 0.83 7.46 -2.39 -0.02 0.81 16 44 H 0.36 9.85 7.11 -89.70 -0.64 9.21 16 45 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 46 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 47 H 0.39 15.35 5.76 -92.71 -0.53 14.81 16 48 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 49 H 0.06 1.53 8.04 -2.39 -0.02 1.51 16 50 H 0.06 1.62 7.73 -2.39 -0.02 1.60 16 Total: -1.00 -84.29 405.05 2.03 -82.26 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: -0.28 Total: 38.46 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 7.02 Total: 11.47 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -6.51 Total: -120.64 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -0.10 Total: -52.73 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 1.90 Total: 41.19 kcal Total: -84.29 2.03 -82.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502734569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.238 kcal (2) G-P(sol) polarization free energy of solvation -84.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds