Wall clock time and date at job start Tue Mar 31 2020 18:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32873 * 1 3 3 C 1.47117 * 119.99468 * 2 1 4 4 C 1.50705 * 120.00232 * 5.49513 * 3 2 1 5 5 C 1.32869 * 120.00105 * 185.49640 * 3 2 1 6 6 C 1.50711 * 119.99501 * 6.24960 * 5 3 2 7 7 C 1.50699 * 109.47049 * 126.12733 * 6 5 3 8 8 O 1.21281 * 119.99917 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99868 * 179.97438 * 7 6 5 10 10 C 1.47431 * 125.64571 * 179.71410 * 9 7 6 11 11 C 1.55130 * 104.72001 * 155.81781 * 10 9 7 12 12 H 1.09004 * 111.19274 * 279.18986 * 11 10 9 13 13 N 1.46896 * 110.90526 * 155.27555 * 11 10 9 14 14 C 1.46897 * 110.99927 * 92.97650 * 13 11 10 15 15 C 1.50706 * 109.47183 * 179.97438 * 14 13 11 16 16 O 1.21290 * 119.99713 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00186 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00078 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00114 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99779 * 179.97438 * 18 17 15 21 21 N 1.31400 * 120.00348 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99524 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47156 * 60.00697 * 22 20 18 24 24 H 1.48497 * 109.46694 * 180.02562 * 22 20 18 25 25 H 1.48491 * 109.47453 * 300.00295 * 22 20 18 26 26 C 1.55158 * 101.48428 * 37.29333 * 11 10 9 27 27 H 1.09004 * 110.71755 * 82.70011 * 26 11 10 28 28 C 1.53005 * 110.72076 * 205.96566 * 26 11 10 29 29 C 1.47019 * 125.64874 * 0.02562 * 9 7 6 30 30 H 1.07998 * 120.00219 * 359.97438 * 1 2 3 31 31 H 1.08008 * 119.99677 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.00219 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.46886 * 269.99707 * 4 3 2 34 34 H 1.08995 * 109.47032 * 29.99898 * 4 3 2 35 35 H 1.08996 * 109.46776 * 150.00043 * 4 3 2 36 36 H 1.07996 * 120.00554 * 186.25241 * 5 3 2 37 37 H 1.08995 * 109.47029 * 6.12379 * 6 5 3 38 38 H 1.09004 * 109.46727 * 246.12320 * 6 5 3 39 39 H 1.08992 * 110.36753 * 274.74702 * 10 9 7 40 40 H 1.08998 * 110.36565 * 37.07413 * 10 9 7 41 41 H 1.00898 * 110.99955 * 216.92881 * 13 11 10 42 42 H 1.08996 * 109.47393 * 299.99996 * 14 13 11 43 43 H 1.09002 * 109.47272 * 59.99930 * 14 13 11 44 44 H 0.97007 * 120.00238 * 0.02562 * 17 15 14 45 45 H 0.97004 * 120.00107 * 179.97438 * 21 20 18 46 46 H 1.08991 * 109.47205 * 174.97818 * 28 26 11 47 47 H 1.08997 * 109.47079 * 294.98414 * 28 26 11 48 48 H 1.09002 * 109.46605 * 54.98131 * 28 26 11 49 49 H 1.08999 * 109.88273 * 300.44204 * 29 9 7 50 50 H 1.09006 * 109.87939 * 61.45351 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3158 2.5762 0.1250 5 6 3.3883 1.2769 -0.1102 6 6 4.1249 -0.0107 -0.3763 7 6 5.0036 0.1547 -1.5894 8 8 5.0295 1.2140 -2.1795 9 7 5.7614 -0.8742 -2.0179 10 6 6.6577 -0.8521 -3.1883 11 6 7.7095 -1.9553 -2.9001 12 1 8.4863 -1.5929 -2.2267 13 7 8.2930 -2.4623 -4.1492 14 6 9.5236 -1.7353 -4.4885 15 6 10.0924 -2.2823 -5.7725 16 8 9.5279 -3.1883 -6.3484 17 7 11.2278 -1.7641 -6.2812 18 6 11.7449 -2.2614 -7.4495 19 1 11.2427 -3.0687 -7.9619 20 6 12.9152 -1.7267 -7.9742 21 7 13.5265 -0.7449 -7.3506 22 14 13.6202 -2.4048 -9.5657 23 1 12.6280 -2.2371 -10.6578 24 1 14.8639 -1.6695 -9.9090 25 1 13.9296 -3.8471 -9.3952 26 6 6.8390 -3.0400 -2.2124 27 1 6.3270 -3.6517 -2.9553 28 6 7.6906 -3.9106 -1.2862 29 6 5.8262 -2.2064 -1.3995 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 1.8688 -0.9353 -0.0004 33 1 1.0502 2.9393 -0.8678 34 1 0.4091 2.4195 0.7092 35 1 1.9470 3.3116 0.6239 36 1 3.9367 2.2018 -0.0091 37 1 3.4060 -0.8103 -0.5546 38 1 4.7411 -0.2618 0.4871 39 1 6.1013 -1.0831 -4.0966 40 1 7.1426 0.1201 -3.2763 41 1 8.4637 -3.4550 -4.0918 42 1 9.2974 -0.6764 -4.6130 43 1 10.2517 -1.8595 -3.6870 44 1 11.6791 -1.0393 -5.8208 45 1 14.3437 -0.3720 -7.7167 46 1 7.0469 -4.6058 -0.7475 47 1 8.4149 -4.4703 -1.8781 48 1 8.2169 -3.2758 -0.5733 49 1 6.1622 -2.1195 -0.3662 50 1 4.8440 -2.6780 -1.4314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502734570.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:10 Heat of formation + Delta-G solvation = -37.710217 kcal Electronic energy + Delta-G solvation = -28065.925428 eV Core-core repulsion = 24093.669550 eV Total energy + Delta-G solvation = -3972.255877 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.39760 -38.65200 -37.95036 -37.07306 -34.77919 -33.81874 -32.61223 -32.33188 -31.22016 -30.46897 -28.94961 -26.78971 -26.50884 -25.37577 -24.06207 -22.30386 -21.90215 -20.57566 -19.64999 -19.15308 -17.92184 -17.84755 -17.32541 -16.80844 -16.14898 -15.97103 -15.43059 -15.22019 -14.80107 -14.59086 -14.46078 -14.25427 -13.87860 -13.71640 -13.68406 -13.36788 -13.22769 -13.11361 -12.85241 -12.71446 -12.53179 -12.37640 -12.19609 -12.15907 -11.85992 -11.60798 -11.54386 -11.31534 -11.21213 -11.00994 -10.99088 -10.77999 -10.66567 -10.44284 -10.21539 -10.00412 -9.50492 -8.81390 -8.55612 -8.49029 -8.15581 -7.96933 -6.41820 -3.82842 1.00760 2.48663 2.58713 2.90171 3.20187 3.26066 3.30371 3.89370 4.02939 4.13251 4.24512 4.30710 4.35737 4.52896 4.60926 4.66808 4.75485 4.95180 5.04258 5.09119 5.12827 5.17276 5.19156 5.20258 5.22422 5.26447 5.32649 5.35485 5.44100 5.53711 5.57112 5.70546 5.71880 5.80762 5.84094 5.92329 5.95588 6.01944 6.03270 6.08408 6.12586 6.27222 6.38464 6.60415 7.14474 7.33584 7.54758 7.57308 8.01555 8.05375 8.60443 9.17239 9.53539 10.04677 10.75723 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021572 B = 0.001804 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.680675 B =15521.136287 C =16200.454796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.127 4.127 3 C -0.110 4.110 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.113 4.113 7 C 0.531 3.469 8 O -0.535 6.535 9 N -0.620 5.620 10 C 0.115 3.885 11 C 0.078 3.922 12 H 0.063 0.937 13 N -0.655 5.655 14 C 0.050 3.950 15 C 0.440 3.560 16 O -0.584 6.584 17 N -0.562 5.562 18 C -0.301 4.301 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C -0.108 4.108 27 H 0.098 0.902 28 C -0.145 4.145 29 C 0.107 3.893 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.355 0.645 42 H 0.087 0.913 43 H 0.045 0.955 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.057 0.943 49 H 0.070 0.930 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.726 0.111 20.985 28.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.144 4.144 3 C -0.110 4.110 4 C -0.171 4.171 5 C -0.137 4.137 6 C -0.153 4.153 7 C 0.320 3.680 8 O -0.412 6.412 9 N -0.355 5.355 10 C -0.008 4.008 11 C -0.034 4.034 12 H 0.081 0.919 13 N -0.289 5.289 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.199 5.199 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.128 4.128 27 H 0.116 0.884 28 C -0.203 4.203 29 C -0.016 4.016 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.134 0.866 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.139 0.861 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.176 0.824 42 H 0.105 0.895 43 H 0.063 0.937 44 H 0.226 0.774 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.076 0.924 49 H 0.088 0.912 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.343 0.631 19.840 28.423 hybrid contribution 1.411 -0.254 0.113 1.438 sum -18.932 0.376 19.953 27.508 Atomic orbital electron populations 1.24442 0.95736 1.02106 0.99614 1.21964 0.95388 0.96278 1.00794 1.20574 0.93825 0.94417 1.02153 1.20785 0.99988 0.94122 1.02251 1.22803 0.94067 0.97757 0.99110 1.20808 0.98928 0.98714 0.96815 1.20182 0.79701 0.82602 0.85557 1.90729 1.65825 1.26471 1.58167 1.48467 1.44234 1.12317 1.30516 1.22328 0.90740 0.99527 0.88215 1.22783 0.95439 0.94493 0.90660 0.91916 1.59930 1.28831 1.09110 1.31006 1.21759 0.90561 0.99297 0.96675 1.19757 0.83277 0.86712 0.87678 1.90522 1.61296 1.32377 1.62606 1.41854 1.21641 1.33481 1.22901 1.19658 1.06355 1.17464 0.99565 0.87945 1.25266 0.96653 0.96296 0.99676 1.69600 1.19251 1.25261 1.40109 0.85911 0.78073 0.78793 0.81396 1.19866 1.20978 1.19928 1.22429 0.96065 0.96367 0.97892 0.88356 1.21798 0.99747 0.99531 0.99182 1.22107 0.99700 0.82712 0.97107 0.88052 0.88118 0.86588 0.91186 0.91798 0.91573 0.86134 0.88056 0.88043 0.90028 0.90509 0.82428 0.89514 0.93674 0.77440 0.91797 0.91972 0.91714 0.92356 0.91175 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.16 14.07 28.88 0.41 -0.75 16 2 C -0.13 -0.93 9.20 -37.83 -0.35 -1.28 16 3 C -0.11 -0.92 5.98 -102.87 -0.61 -1.54 16 4 C -0.11 -0.81 9.39 36.01 0.34 -0.47 16 5 C -0.12 -1.09 8.43 -36.15 -0.30 -1.40 16 6 C -0.11 -0.93 5.12 -29.03 -0.15 -1.08 16 7 C 0.53 6.47 7.84 -10.99 -0.09 6.38 16 8 O -0.54 -8.82 16.29 5.56 0.09 -8.73 16 9 N -0.62 -6.87 3.32 -170.38 -0.57 -7.44 16 10 C 0.11 1.50 6.61 -2.41 -0.02 1.48 16 11 C 0.08 0.91 2.84 -65.45 -0.19 0.72 16 12 H 0.06 0.72 7.73 -51.93 -0.40 0.32 16 13 N -0.66 -9.97 6.03 -105.60 -0.64 -10.61 16 14 C 0.05 0.86 6.03 -4.97 -0.03 0.83 16 15 C 0.44 10.28 7.82 -10.98 -0.09 10.20 16 16 O -0.58 -15.65 15.78 5.55 0.09 -15.56 16 17 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 18 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 19 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 22 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 26 C -0.11 -0.95 2.95 -88.78 -0.26 -1.21 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 28 C -0.14 -1.05 9.13 37.16 0.34 -0.71 16 29 C 0.11 0.83 6.08 -3.07 -0.02 0.81 16 30 H 0.10 0.59 6.31 -52.49 -0.33 0.25 16 31 H 0.10 0.50 8.06 -52.48 -0.42 0.08 16 32 H 0.12 0.71 6.00 -52.49 -0.31 0.39 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.37 6.67 -51.93 -0.35 0.02 16 35 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 36 H 0.12 1.17 8.04 -52.49 -0.42 0.75 16 37 H 0.10 0.68 5.41 -51.93 -0.28 0.40 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.08 1.11 8.03 -51.93 -0.42 0.69 16 41 H 0.35 5.43 8.14 -39.29 -0.32 5.11 16 42 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 44 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 45 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 49 H 0.07 0.42 7.82 -51.93 -0.41 0.02 16 50 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 412.27 15.07 6.21 6.21 Total: -1.00 -33.64 412.27 -8.57 -42.21 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -8.14 Total: 12.01 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -1.26 Total: 3.96 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.54 Total: -56.17 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: 0.18 Total: -24.29 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.64 -8.57 -42.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502734570.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.497 kcal (2) G-P(sol) polarization free energy of solvation -33.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds