Wall clock time and date at job start Tue Mar 31 2020 18:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32873 * 1 3 3 C 1.47117 * 119.99468 * 2 1 4 4 C 1.50705 * 120.00232 * 5.49513 * 3 2 1 5 5 C 1.32869 * 120.00105 * 185.49640 * 3 2 1 6 6 C 1.50711 * 119.99501 * 6.24960 * 5 3 2 7 7 C 1.50699 * 109.47049 * 126.12733 * 6 5 3 8 8 O 1.21281 * 119.99917 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99868 * 179.97438 * 7 6 5 10 10 C 1.47431 * 125.64571 * 179.71410 * 9 7 6 11 11 C 1.55130 * 104.72001 * 155.81781 * 10 9 7 12 12 H 1.09004 * 111.19274 * 279.18986 * 11 10 9 13 13 N 1.46896 * 110.90526 * 155.27555 * 11 10 9 14 14 C 1.46897 * 110.99927 * 92.97650 * 13 11 10 15 15 C 1.50706 * 109.47183 * 179.97438 * 14 13 11 16 16 O 1.21290 * 119.99713 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00186 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00078 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00114 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99779 * 179.97438 * 18 17 15 21 21 N 1.31400 * 120.00348 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99524 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47156 * 60.00697 * 22 20 18 24 24 H 1.48497 * 109.46694 * 180.02562 * 22 20 18 25 25 H 1.48491 * 109.47453 * 300.00295 * 22 20 18 26 26 C 1.55158 * 101.48428 * 37.29333 * 11 10 9 27 27 H 1.09004 * 110.71755 * 82.70011 * 26 11 10 28 28 C 1.53005 * 110.72076 * 205.96566 * 26 11 10 29 29 C 1.47019 * 125.64874 * 0.02562 * 9 7 6 30 30 H 1.07998 * 120.00219 * 359.97438 * 1 2 3 31 31 H 1.08008 * 119.99677 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.00219 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.46886 * 269.99707 * 4 3 2 34 34 H 1.08995 * 109.47032 * 29.99898 * 4 3 2 35 35 H 1.08996 * 109.46776 * 150.00043 * 4 3 2 36 36 H 1.07996 * 120.00554 * 186.25241 * 5 3 2 37 37 H 1.08995 * 109.47029 * 6.12379 * 6 5 3 38 38 H 1.09004 * 109.46727 * 246.12320 * 6 5 3 39 39 H 1.08992 * 110.36753 * 274.74702 * 10 9 7 40 40 H 1.08998 * 110.36565 * 37.07413 * 10 9 7 41 41 H 1.00898 * 110.99955 * 216.92881 * 13 11 10 42 42 H 1.08996 * 109.47393 * 299.99996 * 14 13 11 43 43 H 1.09002 * 109.47272 * 59.99930 * 14 13 11 44 44 H 0.97007 * 120.00238 * 0.02562 * 17 15 14 45 45 H 0.97004 * 120.00107 * 179.97438 * 21 20 18 46 46 H 1.08991 * 109.47205 * 174.97818 * 28 26 11 47 47 H 1.08997 * 109.47079 * 294.98414 * 28 26 11 48 48 H 1.09002 * 109.46605 * 54.98131 * 28 26 11 49 49 H 1.08999 * 109.88273 * 300.44204 * 29 9 7 50 50 H 1.09006 * 109.87939 * 61.45351 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3158 2.5762 0.1250 5 6 3.3883 1.2769 -0.1102 6 6 4.1249 -0.0107 -0.3763 7 6 5.0036 0.1547 -1.5894 8 8 5.0295 1.2140 -2.1795 9 7 5.7614 -0.8742 -2.0179 10 6 6.6577 -0.8521 -3.1883 11 6 7.7095 -1.9553 -2.9001 12 1 8.4863 -1.5929 -2.2267 13 7 8.2930 -2.4623 -4.1492 14 6 9.5236 -1.7353 -4.4885 15 6 10.0924 -2.2823 -5.7725 16 8 9.5279 -3.1883 -6.3484 17 7 11.2278 -1.7641 -6.2812 18 6 11.7449 -2.2614 -7.4495 19 1 11.2427 -3.0687 -7.9619 20 6 12.9152 -1.7267 -7.9742 21 7 13.5265 -0.7449 -7.3506 22 14 13.6202 -2.4048 -9.5657 23 1 12.6280 -2.2371 -10.6578 24 1 14.8639 -1.6695 -9.9090 25 1 13.9296 -3.8471 -9.3952 26 6 6.8390 -3.0400 -2.2124 27 1 6.3270 -3.6517 -2.9553 28 6 7.6906 -3.9106 -1.2862 29 6 5.8262 -2.2064 -1.3995 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 1.8688 -0.9353 -0.0004 33 1 1.0502 2.9393 -0.8678 34 1 0.4091 2.4195 0.7092 35 1 1.9470 3.3116 0.6239 36 1 3.9367 2.2018 -0.0091 37 1 3.4060 -0.8103 -0.5546 38 1 4.7411 -0.2618 0.4871 39 1 6.1013 -1.0831 -4.0966 40 1 7.1426 0.1201 -3.2763 41 1 8.4637 -3.4550 -4.0918 42 1 9.2974 -0.6764 -4.6130 43 1 10.2517 -1.8595 -3.6870 44 1 11.6791 -1.0393 -5.8208 45 1 14.3437 -0.3720 -7.7167 46 1 7.0469 -4.6058 -0.7475 47 1 8.4149 -4.4703 -1.8781 48 1 8.2169 -3.2758 -0.5733 49 1 6.1622 -2.1195 -0.3662 50 1 4.8440 -2.6780 -1.4314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502734570.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:09 Heat of formation + Delta-G solvation = -60.943747 kcal Electronic energy + Delta-G solvation = -28066.932909 eV Core-core repulsion = 24093.669550 eV Total energy + Delta-G solvation = -3973.263359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.30461 -40.18592 -39.18498 -37.74870 -36.23023 -35.58013 -33.53800 -33.21861 -32.94412 -31.12223 -29.96397 -28.04969 -27.34682 -26.39748 -25.58104 -23.08833 -22.61602 -21.53052 -20.99562 -20.41240 -19.88590 -18.46754 -18.26663 -17.79223 -17.46516 -16.88439 -16.77207 -16.35843 -16.22338 -15.93434 -15.51699 -15.26683 -15.20386 -14.86428 -14.57668 -14.37388 -14.13008 -13.99481 -13.81060 -13.51134 -13.46123 -13.43579 -13.27838 -13.11034 -13.02146 -12.90453 -12.73453 -12.44450 -12.43927 -12.13815 -12.10292 -11.96234 -11.55709 -11.50909 -11.48741 -11.32935 -10.96416 -10.36518 -10.03065 -9.72928 -9.42346 -9.13293 -8.47311 -5.96421 0.43111 1.39436 1.41404 1.52459 1.58691 1.84944 2.03481 2.21028 2.29178 2.89899 3.19834 3.29967 3.50676 3.55798 3.72841 3.84345 3.98484 4.00798 4.16137 4.21999 4.28772 4.30910 4.41697 4.45243 4.50032 4.54101 4.55352 4.65724 4.67557 4.72858 4.79077 4.79907 4.88349 4.92284 4.94634 5.02193 5.14293 5.16541 5.26062 5.39351 5.40435 5.49579 5.57478 5.81720 5.87014 6.03966 6.06873 6.34917 6.51009 6.58384 7.11121 7.11256 7.54555 8.09307 8.69765 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021572 B = 0.001804 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.680675 B =15521.136287 C =16200.454796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.147 4.147 3 C -0.108 4.108 4 C -0.119 4.119 5 C -0.144 4.144 6 C -0.100 4.100 7 C 0.523 3.477 8 O -0.591 6.591 9 N -0.618 5.618 10 C 0.114 3.886 11 C 0.082 3.918 12 H 0.073 0.927 13 N -0.668 5.668 14 C 0.065 3.935 15 C 0.438 3.562 16 O -0.621 6.621 17 N -0.573 5.573 18 C -0.336 4.336 19 H 0.080 0.920 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.994 3.006 23 H -0.273 1.273 24 H -0.271 1.271 25 H -0.270 1.270 26 C -0.100 4.100 27 H 0.092 0.908 28 C -0.140 4.140 29 C 0.106 3.894 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.131 0.869 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.354 0.646 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.084 0.916 47 H 0.052 0.948 48 H 0.065 0.935 49 H 0.099 0.901 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.625 -1.181 23.000 30.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.109 4.109 4 C -0.175 4.175 5 C -0.162 4.162 6 C -0.138 4.138 7 C 0.314 3.686 8 O -0.471 6.471 9 N -0.352 5.352 10 C -0.010 4.010 11 C -0.029 4.029 12 H 0.091 0.909 13 N -0.302 5.302 14 C -0.067 4.067 15 C 0.226 3.774 16 O -0.508 6.508 17 N -0.210 5.210 18 C -0.465 4.465 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.818 3.182 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.195 1.195 26 C -0.119 4.119 27 H 0.110 0.890 28 C -0.198 4.198 29 C -0.016 4.016 30 H 0.122 0.878 31 H 0.135 0.865 32 H 0.148 0.852 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.175 0.825 42 H 0.113 0.887 43 H 0.089 0.911 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.103 0.897 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.117 0.883 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.244 -0.680 21.900 30.519 hybrid contribution 1.573 0.164 -0.500 1.659 sum -19.672 -0.516 21.400 29.072 Atomic orbital electron populations 1.24682 0.95577 1.03092 0.97610 1.22108 0.95885 0.96205 1.02223 1.20842 0.93781 0.95484 1.00750 1.20844 1.00590 0.93854 1.02245 1.22799 0.94546 0.97859 1.01041 1.20801 0.98728 0.98780 0.95534 1.20995 0.79584 0.81844 0.86163 1.90700 1.67635 1.28711 1.60078 1.48552 1.43281 1.13604 1.29750 1.22148 0.91293 0.98904 0.88638 1.22780 0.95429 0.95222 0.89438 0.90920 1.59842 1.27816 1.08981 1.33550 1.21584 0.91834 0.99344 0.93961 1.20794 0.82134 0.85581 0.88903 1.90489 1.62081 1.33984 1.64201 1.41934 1.22486 1.33882 1.22688 1.19653 1.07545 1.18151 1.01172 0.90168 1.26060 0.96359 0.96301 1.02576 1.69666 1.19507 1.25673 1.41251 0.84974 0.77578 0.78377 0.77317 1.19862 1.19529 1.19464 1.22402 0.95821 0.95702 0.98001 0.89002 1.21778 0.99619 0.99573 0.98810 1.22380 1.00803 0.80572 0.97882 0.87789 0.86512 0.85185 0.91664 0.90369 0.91425 0.87757 0.85974 0.85306 0.92222 0.92731 0.82464 0.88734 0.91059 0.77036 0.91293 0.89742 0.92903 0.91621 0.88305 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 14.07 66.64 0.94 -0.83 16 2 C -0.15 -1.82 9.20 23.43 0.22 -1.60 16 3 C -0.11 -1.71 5.98 -18.71 -0.11 -1.83 16 4 C -0.12 -1.60 9.39 71.24 0.67 -0.93 16 5 C -0.14 -2.57 8.43 24.51 0.21 -2.37 16 6 C -0.10 -1.44 5.12 29.10 0.15 -1.29 16 7 C 0.52 12.47 7.84 87.66 0.69 13.16 16 8 O -0.59 -20.26 16.29 -3.03 -0.05 -20.30 16 9 N -0.62 -12.96 3.32 -811.36 -2.70 -15.66 16 10 C 0.11 3.01 6.61 86.93 0.57 3.59 16 11 C 0.08 1.83 2.84 46.39 0.13 1.96 16 12 H 0.07 1.52 7.73 -2.38 -0.02 1.51 16 13 N -0.67 -20.16 6.03 -488.01 -2.94 -23.11 16 14 C 0.07 2.23 6.03 85.56 0.52 2.75 16 15 C 0.44 20.88 7.82 87.66 0.69 21.56 16 16 O -0.62 -34.21 15.78 -3.06 -0.05 -34.26 16 17 N -0.57 -29.66 5.29 -306.98 -1.62 -31.28 16 18 C -0.34 -19.20 9.68 84.04 0.81 -18.39 16 19 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 20 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 21 N -0.92 -50.13 13.05 21.66 0.28 -49.84 16 22 Si 0.99 43.20 29.55 68.60 2.03 45.23 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 C -0.10 -1.52 2.95 -9.60 -0.03 -1.55 16 27 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 28 C -0.14 -1.59 9.13 71.98 0.66 -0.93 16 29 C 0.11 1.28 6.08 86.73 0.53 1.81 16 30 H 0.10 0.98 6.31 -2.91 -0.02 0.96 16 31 H 0.12 0.81 8.06 -2.91 -0.02 0.79 16 32 H 0.13 1.17 6.00 -2.91 -0.02 1.15 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 0.80 6.67 -2.39 -0.02 0.78 16 35 H 0.07 0.87 8.06 -2.39 -0.02 0.85 16 36 H 0.10 2.13 8.04 -2.91 -0.02 2.11 16 37 H 0.12 1.24 5.41 -2.39 -0.01 1.23 16 38 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 40 H 0.05 1.65 8.03 -2.39 -0.02 1.63 16 41 H 0.35 10.75 8.14 -89.70 -0.73 10.02 16 42 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.07 2.09 8.09 -2.39 -0.02 2.07 16 44 H 0.40 19.55 7.90 -92.70 -0.73 18.82 16 45 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 46 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 49 H 0.10 0.72 7.82 -2.39 -0.02 0.70 16 50 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 Total: -1.00 -76.06 412.27 1.53 -74.53 By element: Atomic # 1 Polarization: 40.32 SS G_CDS: -0.51 Total: 39.81 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 7.10 Total: 14.88 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -6.98 Total: -119.88 kcal Atomic # 8 Polarization: -54.46 SS G_CDS: -0.10 Total: -54.56 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -76.06 1.53 -74.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502734570.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.590 kcal (2) G-P(sol) polarization free energy of solvation -76.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds