Wall clock time and date at job start Tue Mar 31 2020 19:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46910 * 2 1 4 4 C 1.52998 * 109.47188 * 120.00368 * 2 1 3 5 5 N 1.46495 * 109.47453 * 65.00072 * 4 2 1 6 6 C 1.35425 * 119.47137 * 89.99784 * 5 4 2 7 7 C 1.35760 * 121.23233 * 179.70052 * 6 5 4 8 8 C 1.39473 * 120.13058 * 0.27843 * 7 6 5 9 9 C 1.39339 * 118.95575 * 0.02562 * 8 7 6 10 10 C 1.47086 * 120.58328 * 179.97438 * 9 8 7 11 11 O 1.21643 * 119.99961 * 354.14548 * 10 9 8 12 12 N 1.34776 * 119.99585 * 174.14463 * 10 9 8 13 13 C 1.46499 * 119.99832 * 185.10414 * 12 10 9 14 14 C 1.52994 * 109.47418 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47399 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.47214 * 304.99821 * 15 14 13 17 17 C 1.53007 * 109.47401 * 184.99882 * 15 14 13 18 18 N 1.46499 * 109.47260 * 64.99931 * 15 14 13 19 19 C 1.36934 * 120.00100 * 205.00409 * 18 15 14 20 20 H 1.08001 * 120.00254 * 359.97438 * 19 18 15 21 21 C 1.38818 * 119.99822 * 180.02562 * 19 18 15 22 22 N 1.31614 * 120.00019 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99847 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46989 * 89.99489 * 23 21 19 25 25 H 1.48493 * 109.46809 * 209.99513 * 23 21 19 26 26 H 1.48500 * 109.47163 * 329.99824 * 23 21 19 27 27 C 1.34652 * 119.47196 * 270.26385 * 5 4 2 28 28 O 1.21886 * 120.10453 * 0.02562 * 27 5 4 29 29 H 1.09011 * 109.47083 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47294 * 299.99428 * 1 2 3 31 31 H 1.08999 * 109.47489 * 60.00093 * 1 2 3 32 32 H 1.09001 * 109.47276 * 240.00207 * 2 1 3 33 33 H 1.09001 * 109.47205 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.46969 * 300.00226 * 3 2 1 35 35 H 1.09001 * 109.46982 * 60.00027 * 3 2 1 36 36 H 1.09000 * 109.46855 * 305.00051 * 4 2 1 37 37 H 1.09000 * 109.47210 * 185.00196 * 4 2 1 38 38 H 1.08003 * 119.38502 * 359.97438 * 6 5 4 39 39 H 1.08000 * 119.93326 * 180.25670 * 7 6 5 40 40 H 1.07996 * 120.52137 * 180.02562 * 8 7 6 41 41 H 0.96999 * 120.00405 * 5.09834 * 12 10 9 42 42 H 1.09007 * 109.47017 * 300.00038 * 13 12 10 43 43 H 1.09001 * 109.47442 * 59.99364 * 13 12 10 44 44 H 1.09003 * 109.47334 * 299.99593 * 14 13 12 45 45 H 1.09010 * 109.47119 * 59.99568 * 14 13 12 46 46 H 1.09006 * 109.46857 * 60.00167 * 17 15 14 47 47 H 1.08996 * 109.47113 * 179.97438 * 17 15 14 48 48 H 1.08995 * 109.47043 * 300.00456 * 17 15 14 49 49 H 0.96999 * 120.00023 * 24.99808 * 18 15 14 50 50 H 0.97004 * 119.99668 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1905 6 6 2.4837 -3.0282 0.6061 7 6 2.1631 -4.3456 0.5374 8 6 0.9566 -4.8013 1.0684 9 6 0.0935 -3.8848 1.6656 10 6 -1.1881 -4.3260 2.2366 11 8 -1.5517 -5.4784 2.0967 12 7 -1.9596 -3.4535 2.9149 13 6 -3.1804 -3.9175 3.5787 14 6 -3.8645 -2.7372 4.2712 15 6 -5.1397 -3.2217 4.9639 16 1 -5.7766 -3.7290 4.2392 17 6 -5.8887 -2.0230 5.5501 18 7 -4.7879 -4.1514 6.0400 19 6 -5.6940 -5.0890 6.4583 20 1 -6.6681 -5.1429 5.9952 21 6 -5.3607 -5.9696 7.4784 22 7 -4.1737 -5.9036 8.0431 23 14 -6.5970 -7.2483 8.0495 24 1 -6.4250 -8.4919 7.2563 25 1 -6.3748 -7.5437 9.4877 26 1 -7.9738 -6.7257 7.8583 27 6 0.4732 -2.5184 1.7136 28 8 -0.2640 -1.6970 2.2308 29 1 -0.3634 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6053 -0.2618 2.1369 37 1 3.1263 -0.6444 1.2951 38 1 3.4211 -2.6886 0.1909 39 1 2.8436 -5.0422 0.0702 40 1 0.6954 -5.8479 1.0176 41 1 -1.7066 -2.5184 2.9636 42 1 -3.8560 -4.3463 2.8384 43 1 -2.9255 -4.6751 4.3198 44 1 -3.1888 -2.3088 5.0115 45 1 -4.1194 -1.9793 3.5303 46 1 -6.1505 -1.3313 4.7494 47 1 -6.7974 -2.3682 6.0432 48 1 -5.2518 -1.5157 6.2747 49 1 -3.9131 -4.1028 6.4562 50 1 -3.9407 -6.5192 8.7556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001503503111.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:21 Heat of formation + Delta-G solvation = -37.918296 kcal Electronic energy + Delta-G solvation = -29239.534630 eV Core-core repulsion = 25267.269730 eV Total energy + Delta-G solvation = -3972.264900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.95772 -39.12516 -37.42584 -36.77369 -36.32325 -34.01072 -33.67855 -32.09074 -30.50967 -29.06270 -27.95185 -27.60786 -27.43123 -25.13418 -23.65634 -23.05338 -22.30514 -21.03329 -20.43737 -19.64639 -18.03368 -17.85444 -17.22805 -17.01646 -16.47386 -15.98643 -15.41467 -15.18041 -15.04082 -14.78183 -14.54575 -14.02938 -13.88559 -13.70466 -13.41193 -13.34439 -12.90038 -12.75801 -12.74939 -12.70143 -12.53075 -12.41821 -12.30439 -11.88363 -11.54731 -11.42531 -11.38864 -11.26635 -10.90071 -10.80640 -10.61830 -10.51160 -10.28207 -10.15881 -10.14717 -9.91244 -9.57880 -9.51348 -8.80274 -8.53729 -8.26685 -6.83272 -5.64488 -2.92446 0.17830 1.50425 2.12456 2.79208 3.52489 3.57180 3.58544 3.61865 3.76742 4.05815 4.06578 4.24748 4.41958 4.47704 4.67854 4.70258 4.77564 4.89301 4.97904 5.01654 5.14758 5.27753 5.39556 5.48667 5.50419 5.52947 5.59530 5.61341 5.65509 5.70557 5.79392 5.83108 5.95059 6.01576 6.05003 6.10462 6.27263 6.33864 6.52077 6.56802 6.57974 6.68221 6.87499 7.00217 7.03683 7.19971 7.58872 7.81905 8.11855 8.54070 8.71719 9.65134 10.23448 10.58408 11.58388 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016431 B = 0.002484 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.726066 B =11268.524039 C =12379.779194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.145 4.145 4 C 0.089 3.911 5 N -0.489 5.489 6 C 0.154 3.846 7 C -0.238 4.238 8 C 0.053 3.947 9 C -0.267 4.267 10 C 0.568 3.432 11 O -0.551 6.551 12 N -0.714 5.714 13 C 0.121 3.879 14 C -0.130 4.130 15 C 0.174 3.826 16 H 0.049 0.951 17 C -0.162 4.162 18 N -0.723 5.723 19 C -0.234 4.234 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.293 1.293 26 H -0.283 1.283 27 C 0.531 3.469 28 O -0.535 6.535 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.166 0.834 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.411 0.589 42 H 0.061 0.939 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.035 0.965 47 H 0.053 0.947 48 H 0.045 0.955 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.292 13.864 -21.011 32.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.203 4.203 4 C -0.032 4.032 5 N -0.197 5.197 6 C 0.024 3.976 7 C -0.261 4.261 8 C 0.030 3.970 9 C -0.274 4.274 10 C 0.354 3.646 11 O -0.431 6.431 12 N -0.374 5.374 13 C -0.002 4.002 14 C -0.169 4.169 15 C 0.064 3.936 16 H 0.067 0.933 17 C -0.223 4.223 18 N -0.365 5.365 19 C -0.365 4.365 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.582 5.582 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.209 1.209 27 C 0.333 3.667 28 O -0.417 6.417 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.183 0.817 39 H 0.171 0.829 40 H 0.168 0.832 41 H 0.256 0.744 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.054 0.946 47 H 0.072 0.928 48 H 0.065 0.935 49 H 0.217 0.783 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.397 13.589 -20.678 31.441 hybrid contribution -0.088 -0.401 0.504 0.650 sum 19.309 13.188 -20.174 30.883 Atomic orbital electron populations 1.21883 0.93633 1.02487 1.02282 1.21502 0.97680 0.96774 0.96861 1.21774 1.00838 0.94850 1.02811 1.22278 1.01041 0.78418 1.01432 1.45458 1.17518 1.09944 1.46742 1.22164 0.94551 0.90047 0.90843 1.20695 1.00199 0.94726 1.10443 1.22061 0.89732 1.00811 0.84415 1.21191 1.00312 0.92876 1.13010 1.17403 0.83019 0.85418 0.78713 1.90801 1.73192 1.18561 1.60520 1.46607 1.24921 1.13723 1.52117 1.21414 0.84820 0.97623 0.96336 1.22021 0.98605 0.96930 0.99319 1.20163 0.92486 0.90374 0.90579 0.93332 1.22417 1.01182 0.98797 0.99881 1.42460 1.16992 1.36800 1.40264 1.19239 0.95545 1.08059 1.13674 0.91234 1.24723 0.96931 0.99980 0.99464 1.69665 1.19960 1.40142 1.28451 0.86216 0.80499 0.81979 0.77676 1.21774 1.21934 1.20873 1.16989 0.80603 0.89375 0.79735 1.90639 1.50224 1.53887 1.46939 0.92733 0.91409 0.92847 0.90893 0.92437 0.91911 0.91979 0.87538 0.88856 0.81703 0.82909 0.83216 0.74376 0.92045 0.90021 0.91720 0.92032 0.94596 0.92801 0.93549 0.78290 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 7.91 37.16 0.29 -0.91 16 2 C -0.11 -0.59 3.13 -90.62 -0.28 -0.87 16 3 C -0.14 -0.58 9.19 37.16 0.34 -0.24 16 4 C 0.09 0.50 4.92 -4.05 -0.02 0.48 16 5 N -0.49 -3.76 2.47 -119.35 -0.30 -4.05 16 6 C 0.15 0.75 10.25 -16.85 -0.17 0.58 16 7 C -0.24 -1.42 9.99 -40.01 -0.40 -1.82 16 8 C 0.05 0.54 9.70 -38.71 -0.38 0.17 16 9 C -0.27 -3.67 5.92 -104.50 -0.62 -4.29 16 10 C 0.57 10.37 7.73 -12.67 -0.10 10.27 16 11 O -0.55 -11.82 16.41 5.24 0.09 -11.73 16 12 N -0.71 -12.88 5.47 -61.49 -0.34 -13.22 16 13 C 0.12 2.40 5.57 -4.05 -0.02 2.38 16 14 C -0.13 -2.37 4.87 -26.74 -0.13 -2.50 16 15 C 0.17 3.67 2.89 -67.93 -0.20 3.48 16 16 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 17 C -0.16 -3.10 9.49 37.16 0.35 -2.75 16 18 N -0.72 -18.88 4.57 -53.42 -0.24 -19.13 16 19 C -0.23 -6.74 9.93 -15.06 -0.15 -6.89 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 22 N -0.93 -29.33 13.06 55.49 0.72 -28.60 16 23 Si 0.90 23.38 29.55 -169.99 -5.02 18.35 16 24 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 25 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 26 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 27 C 0.53 6.44 6.00 -14.92 -0.09 6.35 16 28 O -0.54 -7.56 11.39 5.02 0.06 -7.50 16 29 H 0.05 0.58 6.04 -51.92 -0.31 0.26 16 30 H 0.07 0.64 7.95 -51.93 -0.41 0.23 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.11 0.77 7.39 -51.93 -0.38 0.39 16 37 H 0.09 0.23 8.00 -51.93 -0.42 -0.19 16 38 H 0.17 0.08 8.02 -52.48 -0.42 -0.34 16 39 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16 40 H 0.15 1.53 7.71 -52.49 -0.40 1.13 16 41 H 0.41 6.96 5.08 -40.82 -0.21 6.75 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.08 1.91 7.75 -51.93 -0.40 1.51 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.38 10.69 7.80 -40.82 -0.32 10.37 16 50 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 404.79 15.07 6.10 6.10 Total: -1.00 -36.59 404.79 -8.91 -45.51 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -8.32 Total: 11.42 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -1.66 Total: 2.86 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: -0.15 Total: -65.00 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.14 Total: -19.24 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.59 -8.91 -45.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503503111.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.588 kcal (2) G-P(sol) polarization free energy of solvation -36.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds