Wall clock time and date at job start Tue Mar 31 2020 18:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47045 * 2 1 4 4 C 1.50702 * 109.46983 * 240.00439 * 2 1 3 5 5 O 1.21280 * 119.99626 * 239.99923 * 4 2 1 6 6 N 1.34773 * 120.00277 * 59.99807 * 4 2 1 7 7 C 1.46497 * 120.00137 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.47050 * 179.97438 * 7 6 4 9 9 H 1.08994 * 115.51703 * 29.58175 * 8 7 6 10 10 C 1.52995 * 117.40983 * 244.21316 * 8 7 6 11 11 H 1.09007 * 119.52612 * 4.07745 * 10 8 7 12 12 C 1.54381 * 118.13102 * 160.67314 * 10 8 7 13 13 N 1.48556 * 104.59562 * 87.22780 * 12 10 8 14 14 C 1.46902 * 111.00273 * 200.96156 * 13 12 10 15 15 C 1.50696 * 109.47408 * 170.00064 * 14 13 12 16 16 O 1.21297 * 119.99712 * 0.02562 * 15 14 13 17 17 N 1.34770 * 119.99972 * 179.97438 * 15 14 13 18 18 C 1.37098 * 119.99930 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00126 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00075 * 180.02562 * 18 17 15 21 21 N 1.31405 * 120.00032 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99926 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47138 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46707 * 120.00158 * 22 20 18 25 25 H 1.48499 * 109.46742 * 239.99889 * 22 20 18 26 26 C 1.48561 * 104.22529 * 320.52158 * 13 12 10 27 27 C 1.53006 * 117.44279 * 174.99683 * 8 7 6 28 28 H 1.09006 * 119.52429 * 355.86983 * 27 8 7 29 29 C 1.52995 * 109.47368 * 120.00074 * 2 1 3 30 30 C 1.52996 * 117.50280 * 248.74418 * 29 2 1 31 31 C 1.52998 * 117.50030 * 180.08286 * 29 2 1 32 32 H 1.08996 * 109.47342 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47004 * 299.99698 * 1 2 3 34 34 H 1.08999 * 109.47378 * 59.99581 * 1 2 3 35 35 H 0.96998 * 119.99875 * 0.02562 * 6 4 2 36 36 H 1.08996 * 109.47189 * 60.00114 * 7 6 4 37 37 H 1.09002 * 109.47111 * 299.99674 * 7 6 4 38 38 H 1.08997 * 110.41206 * 206.01193 * 12 10 8 39 39 H 1.08998 * 110.40698 * 328.44993 * 12 10 8 40 40 H 1.09003 * 109.46687 * 290.00634 * 14 13 12 41 41 H 1.08997 * 109.46559 * 49.99816 * 14 13 12 42 42 H 0.96994 * 120.00297 * 0.02562 * 17 15 14 43 43 H 0.97006 * 120.00533 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.41047 * 280.70328 * 26 13 12 45 45 H 1.08995 * 110.41330 * 158.26185 * 26 13 12 46 46 H 1.09003 * 115.54789 * 34.41472 * 29 2 1 47 47 H 1.08996 * 117.49594 * 0.02562 * 30 29 2 48 48 H 1.09005 * 117.49924 * 145.01366 * 30 29 2 49 49 H 1.09005 * 117.49946 * 214.98010 * 31 29 2 50 50 H 1.08998 * 117.49853 * 359.97438 * 31 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7295 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1945 -0.9407 -3.6508 8 6 1.6840 -0.2197 -4.9000 9 1 1.5208 0.8523 -4.7896 10 6 0.7289 -0.9878 -5.8157 11 1 0.3902 -1.9825 -5.5256 12 6 -0.1437 -0.1794 -6.7998 13 7 0.7044 -0.0216 -8.0093 14 6 0.2484 1.1097 -8.8280 15 6 1.2648 1.3930 -9.9040 16 8 2.2699 0.7185 -9.9814 17 7 1.0564 2.3951 -10.7807 18 6 1.9813 2.6531 -11.7593 19 1 2.8767 2.0532 -11.8278 20 6 1.7668 3.6866 -12.6629 21 7 0.6776 4.4170 -12.5793 22 14 3.0267 4.0378 -13.9966 23 1 4.1556 3.0808 -13.8754 24 1 2.3907 3.8876 -15.3301 25 1 3.5354 5.4246 -13.8441 26 6 2.0664 0.2262 -7.4703 27 6 2.1828 -0.7210 -6.2568 28 1 2.9265 -1.5171 -6.2951 29 6 2.0400 -0.7212 1.2492 30 6 2.7394 0.1230 2.3164 31 6 3.5550 -0.8263 1.4352 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 -0.3634 0.5139 -0.8899 35 1 1.1493 0.5390 -2.5435 36 1 1.8308 -1.9682 -3.6507 37 1 3.2845 -0.9411 -3.6510 38 1 -1.0528 -0.7297 -7.0421 39 1 -0.3892 0.7951 -6.3778 40 1 -0.7085 0.8628 -9.2880 41 1 0.1317 1.9909 -8.1973 42 1 0.2524 2.9342 -10.7190 43 1 0.5279 5.1388 -13.2099 44 1 2.1668 1.2642 -7.1533 45 1 2.8213 -0.0187 -8.2175 46 1 1.4318 -1.5594 1.5893 47 1 2.8358 1.1924 2.1287 48 1 2.5916 -0.1599 3.3586 49 1 3.9435 -1.7335 1.8980 50 1 4.1884 -0.3820 0.6674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506774433.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:31 Heat of formation + Delta-G solvation = -11.592633 kcal Electronic energy + Delta-G solvation = -28029.659291 eV Core-core repulsion = 24058.535957 eV Total energy + Delta-G solvation = -3971.123334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.51090 -39.93439 -38.10105 -37.41060 -35.41913 -34.16559 -33.60147 -32.56571 -31.28547 -28.66190 -28.19429 -26.50864 -25.02911 -24.33511 -22.64726 -22.06979 -21.55719 -20.85805 -20.27245 -19.77722 -19.17184 -17.86246 -17.47036 -16.52499 -16.09385 -15.79919 -15.53821 -15.38235 -15.00848 -14.80660 -14.55655 -14.30447 -14.08511 -13.76230 -13.51212 -13.48297 -13.03786 -12.99846 -12.77634 -12.61422 -12.23990 -12.07907 -11.87548 -11.84764 -11.58538 -11.50333 -11.38668 -11.23729 -11.06247 -10.97555 -10.76235 -10.41691 -10.36924 -10.26383 -10.15839 -10.02540 -9.76106 -9.53349 -9.26622 -8.43192 -8.05969 -7.95380 -6.45349 -3.86235 2.39977 2.76410 3.13943 3.24982 3.32062 3.44185 3.58963 3.85239 4.02950 4.13033 4.20010 4.35518 4.40451 4.47889 4.59453 4.70714 4.79611 4.85183 4.92148 4.97222 5.02918 5.06931 5.18263 5.21605 5.26727 5.29516 5.33346 5.41805 5.46024 5.51761 5.61150 5.63010 5.65806 5.70869 5.75599 5.80112 5.88090 5.90270 5.94387 6.10263 6.18204 6.22626 6.24163 6.62673 7.12332 7.21345 7.23547 7.52292 7.97387 8.02543 8.57494 9.14377 9.49815 10.01217 10.72315 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023740 B = 0.001675 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.178613 B =16713.720033 C =16901.284345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 H 0.097 0.903 4 C 0.515 3.485 5 O -0.532 6.532 6 N -0.728 5.728 7 C 0.154 3.846 8 C -0.145 4.145 9 H 0.105 0.895 10 C -0.157 4.157 11 H 0.117 0.883 12 C 0.058 3.942 13 N -0.487 5.487 14 C 0.034 3.966 15 C 0.442 3.558 16 O -0.580 6.580 17 N -0.561 5.561 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.064 3.936 27 C -0.144 4.144 28 H 0.119 0.881 29 C -0.136 4.136 30 C -0.184 4.184 31 C -0.156 4.156 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.400 0.600 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.042 0.958 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.037 0.963 45 H 0.121 0.879 46 H 0.107 0.893 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.093 0.907 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.382 -5.636 26.276 27.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 H 0.115 0.885 4 C 0.301 3.699 5 O -0.408 6.408 6 N -0.381 5.381 7 C 0.031 3.969 8 C -0.164 4.164 9 H 0.123 0.877 10 C -0.176 4.176 11 H 0.135 0.865 12 C -0.070 4.070 13 N -0.212 5.212 14 C -0.098 4.098 15 C 0.227 3.773 16 O -0.465 6.465 17 N -0.198 5.198 18 C -0.429 4.429 19 H 0.122 0.878 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.063 4.063 27 C -0.163 4.163 28 H 0.137 0.863 29 C -0.155 4.155 30 C -0.221 4.221 31 C -0.193 4.193 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.235 0.765 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.060 0.940 40 H 0.110 0.890 41 H 0.066 0.934 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.055 0.945 45 H 0.139 0.861 46 H 0.125 0.875 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.112 0.888 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.280 -7.118 25.778 26.839 hybrid contribution -0.357 1.786 -0.315 1.848 sum -2.637 -5.332 25.462 26.148 Atomic orbital electron populations 1.21750 0.92389 1.02939 1.02804 1.20906 0.97612 0.99941 0.91763 0.88536 1.20631 0.80145 0.84774 0.84389 1.90712 1.37325 1.26017 1.86714 1.46037 1.54110 1.32307 1.05605 1.20802 0.99129 0.95507 0.81463 1.22657 1.03619 0.99278 0.90825 0.87742 1.23556 0.92718 1.00575 1.00719 0.86518 1.22695 0.96565 0.98201 0.89504 1.65405 1.01770 1.38601 1.15392 1.22092 0.99393 0.92387 0.95884 1.19689 0.88554 0.83827 0.85219 1.90453 1.30285 1.50978 1.74792 1.41852 1.21882 1.28863 1.27160 1.19761 1.02207 1.14526 1.06390 0.87791 1.25270 0.97519 0.96113 0.99011 1.69617 1.25894 1.20635 1.38065 0.85795 0.80243 0.78256 0.80032 1.19191 1.20706 1.20774 1.22869 0.93373 0.95683 0.94363 1.23637 0.97798 1.02562 0.92315 0.86338 1.21934 0.96255 1.01549 0.95729 1.23108 1.05114 0.97559 0.96291 1.22794 0.93430 1.01127 1.01948 0.91915 0.91172 0.91941 0.76522 0.91117 0.90828 0.89738 0.93979 0.89040 0.93367 0.77455 0.91889 0.94476 0.86087 0.87529 0.88877 0.88742 0.88813 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.07 37.16 0.34 -0.37 16 2 C -0.08 -0.54 2.88 -91.77 -0.26 -0.81 16 3 H 0.10 0.53 7.90 -51.93 -0.41 0.12 16 4 C 0.51 4.95 7.03 -10.99 -0.08 4.87 16 5 O -0.53 -7.16 15.09 5.56 0.08 -7.08 16 6 N -0.73 -5.92 5.45 -60.30 -0.33 -6.24 16 7 C 0.15 1.47 5.95 -4.04 -0.02 1.44 16 8 C -0.14 -1.43 5.39 -90.62 -0.49 -1.92 16 9 H 0.10 1.00 8.04 -51.93 -0.42 0.58 16 10 C -0.16 -1.74 6.73 -89.24 -0.60 -2.34 16 11 H 0.12 1.18 8.12 -51.93 -0.42 0.76 16 12 C 0.06 0.73 6.30 -2.18 -0.01 0.71 16 13 N -0.49 -8.10 5.33 -231.42 -1.23 -9.33 16 14 C 0.03 0.60 5.55 -4.98 -0.03 0.58 16 15 C 0.44 10.25 7.50 -10.99 -0.08 10.17 16 16 O -0.58 -15.22 13.24 5.54 0.07 -15.15 16 17 N -0.56 -14.03 5.29 -10.97 -0.06 -14.09 16 18 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.24 13.05 55.50 0.72 -23.51 16 22 Si 0.93 20.85 29.55 -169.99 -5.02 15.82 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 26 C 0.06 1.06 5.11 -2.18 -0.01 1.05 16 27 C -0.14 -1.82 6.84 -89.23 -0.61 -2.43 16 28 H 0.12 1.44 8.14 -51.93 -0.42 1.01 16 29 C -0.14 -1.02 4.72 -90.63 -0.43 -1.44 16 30 C -0.18 -1.14 10.18 -26.70 -0.27 -1.41 16 31 C -0.16 -1.28 8.98 -26.70 -0.24 -1.52 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 34 H 0.06 0.25 7.56 -51.93 -0.39 -0.14 16 35 H 0.40 2.33 7.82 -40.82 -0.32 2.02 16 36 H 0.07 0.72 7.93 -51.93 -0.41 0.31 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.04 0.49 7.82 -51.93 -0.41 0.08 16 40 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.05 0.77 7.88 -51.93 -0.41 0.36 16 42 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 43 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.04 0.62 8.00 -51.93 -0.42 0.20 16 45 H 0.12 2.42 6.05 -51.93 -0.31 2.10 16 46 H 0.11 0.80 8.11 -51.93 -0.42 0.38 16 47 H 0.09 0.51 8.05 -51.93 -0.42 0.09 16 48 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 50 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 405.62 15.07 6.11 6.11 Total: -1.00 -32.22 405.62 -11.09 -43.31 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -8.39 Total: 11.48 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -3.04 Total: -1.32 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.90 Total: -53.18 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: 0.16 Total: -22.22 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.22 -11.09 -43.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506774433.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.719 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds