Wall clock time and date at job start Tue Mar 31 2020 18:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47045 * 2 1 4 4 C 1.50702 * 109.46983 * 240.00439 * 2 1 3 5 5 O 1.21280 * 119.99626 * 239.99923 * 4 2 1 6 6 N 1.34773 * 120.00277 * 59.99807 * 4 2 1 7 7 C 1.46497 * 120.00137 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.47050 * 179.97438 * 7 6 4 9 9 H 1.08994 * 115.51703 * 29.58175 * 8 7 6 10 10 C 1.52995 * 117.40983 * 244.21316 * 8 7 6 11 11 H 1.09007 * 119.52612 * 4.07745 * 10 8 7 12 12 C 1.54381 * 118.13102 * 160.67314 * 10 8 7 13 13 N 1.48556 * 104.59562 * 87.22780 * 12 10 8 14 14 C 1.46902 * 111.00273 * 200.96156 * 13 12 10 15 15 C 1.50696 * 109.47408 * 170.00064 * 14 13 12 16 16 O 1.21297 * 119.99712 * 0.02562 * 15 14 13 17 17 N 1.34770 * 119.99972 * 179.97438 * 15 14 13 18 18 C 1.37098 * 119.99930 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00126 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00075 * 180.02562 * 18 17 15 21 21 N 1.31405 * 120.00032 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99926 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47138 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46707 * 120.00158 * 22 20 18 25 25 H 1.48499 * 109.46742 * 239.99889 * 22 20 18 26 26 C 1.48561 * 104.22529 * 320.52158 * 13 12 10 27 27 C 1.53006 * 117.44279 * 174.99683 * 8 7 6 28 28 H 1.09006 * 119.52429 * 355.86983 * 27 8 7 29 29 C 1.52995 * 109.47368 * 120.00074 * 2 1 3 30 30 C 1.52996 * 117.50280 * 248.74418 * 29 2 1 31 31 C 1.52998 * 117.50030 * 180.08286 * 29 2 1 32 32 H 1.08996 * 109.47342 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47004 * 299.99698 * 1 2 3 34 34 H 1.08999 * 109.47378 * 59.99581 * 1 2 3 35 35 H 0.96998 * 119.99875 * 0.02562 * 6 4 2 36 36 H 1.08996 * 109.47189 * 60.00114 * 7 6 4 37 37 H 1.09002 * 109.47111 * 299.99674 * 7 6 4 38 38 H 1.08997 * 110.41206 * 206.01193 * 12 10 8 39 39 H 1.08998 * 110.40698 * 328.44993 * 12 10 8 40 40 H 1.09003 * 109.46687 * 290.00634 * 14 13 12 41 41 H 1.08997 * 109.46559 * 49.99816 * 14 13 12 42 42 H 0.96994 * 120.00297 * 0.02562 * 17 15 14 43 43 H 0.97006 * 120.00533 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.41047 * 280.70328 * 26 13 12 45 45 H 1.08995 * 110.41330 * 158.26185 * 26 13 12 46 46 H 1.09003 * 115.54789 * 34.41472 * 29 2 1 47 47 H 1.08996 * 117.49594 * 0.02562 * 30 29 2 48 48 H 1.09005 * 117.49924 * 145.01366 * 30 29 2 49 49 H 1.09005 * 117.49946 * 214.98010 * 31 29 2 50 50 H 1.08998 * 117.49853 * 359.97438 * 31 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7295 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1945 -0.9407 -3.6508 8 6 1.6840 -0.2197 -4.9000 9 1 1.5208 0.8523 -4.7896 10 6 0.7289 -0.9878 -5.8157 11 1 0.3902 -1.9825 -5.5256 12 6 -0.1437 -0.1794 -6.7998 13 7 0.7044 -0.0216 -8.0093 14 6 0.2484 1.1097 -8.8280 15 6 1.2648 1.3930 -9.9040 16 8 2.2699 0.7185 -9.9814 17 7 1.0564 2.3951 -10.7807 18 6 1.9813 2.6531 -11.7593 19 1 2.8767 2.0532 -11.8278 20 6 1.7668 3.6866 -12.6629 21 7 0.6776 4.4170 -12.5793 22 14 3.0267 4.0378 -13.9966 23 1 4.1556 3.0808 -13.8754 24 1 2.3907 3.8876 -15.3301 25 1 3.5354 5.4246 -13.8441 26 6 2.0664 0.2262 -7.4703 27 6 2.1828 -0.7210 -6.2568 28 1 2.9265 -1.5171 -6.2951 29 6 2.0400 -0.7212 1.2492 30 6 2.7394 0.1230 2.3164 31 6 3.5550 -0.8263 1.4352 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 -0.3634 0.5139 -0.8899 35 1 1.1493 0.5390 -2.5435 36 1 1.8308 -1.9682 -3.6507 37 1 3.2845 -0.9411 -3.6510 38 1 -1.0528 -0.7297 -7.0421 39 1 -0.3892 0.7951 -6.3778 40 1 -0.7085 0.8628 -9.2880 41 1 0.1317 1.9909 -8.1973 42 1 0.2524 2.9342 -10.7190 43 1 0.5279 5.1388 -13.2099 44 1 2.1668 1.2642 -7.1533 45 1 2.8213 -0.0187 -8.2175 46 1 1.4318 -1.5594 1.5893 47 1 2.8358 1.1924 2.1287 48 1 2.5916 -0.1599 3.3586 49 1 3.9435 -1.7335 1.8980 50 1 4.1884 -0.3820 0.6674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506774433.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:30 Heat of formation + Delta-G solvation = -34.042282 kcal Electronic energy + Delta-G solvation = -28030.632780 eV Core-core repulsion = 24058.535957 eV Total energy + Delta-G solvation = -3972.096824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.43685 -40.91233 -39.78325 -38.06251 -36.52093 -35.87821 -34.76466 -33.32901 -33.12825 -29.85333 -29.32272 -27.76205 -26.25231 -25.36609 -23.26790 -23.10683 -22.31904 -21.74921 -21.35757 -20.92133 -20.50483 -19.84340 -18.16986 -17.68079 -17.30765 -16.80993 -16.65971 -16.40150 -16.30918 -15.98452 -15.78685 -15.38511 -15.29782 -14.92823 -14.87704 -14.44422 -14.32416 -13.93603 -13.58355 -13.49137 -13.33954 -13.21557 -13.06648 -13.00925 -12.68748 -12.57986 -12.41904 -12.37197 -12.26650 -12.18241 -12.11061 -11.95229 -11.49997 -11.37187 -11.05312 -11.01187 -10.96151 -10.53755 -10.20041 -10.04943 -10.00959 -9.34838 -8.48085 -5.96574 1.35455 1.41238 1.55128 1.67665 2.02484 2.05495 2.27281 2.53113 2.85203 3.02457 3.18939 3.29423 3.43963 3.60949 3.67860 3.82289 3.93451 4.02284 4.10845 4.14732 4.19041 4.22913 4.28184 4.34841 4.38627 4.43159 4.47854 4.57414 4.59627 4.61352 4.68796 4.76492 4.82388 4.91630 4.97469 5.03240 5.08141 5.12335 5.21779 5.22882 5.26967 5.30583 5.37536 5.40760 5.46531 5.83475 5.89906 6.09134 6.57401 6.59270 7.11829 7.28493 7.54119 8.10166 8.69466 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023740 B = 0.001675 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.178613 B =16713.720033 C =16901.284345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.075 4.075 3 H 0.115 0.885 4 C 0.511 3.489 5 O -0.576 6.576 6 N -0.717 5.717 7 C 0.160 3.840 8 C -0.113 4.113 9 H 0.116 0.884 10 C -0.143 4.143 11 H 0.132 0.868 12 C 0.058 3.942 13 N -0.509 5.509 14 C 0.046 3.954 15 C 0.438 3.562 16 O -0.616 6.616 17 N -0.572 5.572 18 C -0.333 4.333 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.992 3.008 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.270 1.270 26 C 0.068 3.932 27 C -0.164 4.164 28 H 0.118 0.882 29 C -0.144 4.144 30 C -0.162 4.162 31 C -0.178 4.178 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.415 0.585 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.059 0.941 40 H 0.112 0.888 41 H 0.071 0.929 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.030 0.970 45 H 0.076 0.924 46 H 0.102 0.898 47 H 0.106 0.894 48 H 0.106 0.894 49 H 0.086 0.914 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.196 -4.546 27.882 28.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.096 4.096 3 H 0.132 0.868 4 C 0.298 3.702 5 O -0.455 6.455 6 N -0.370 5.370 7 C 0.036 3.964 8 C -0.132 4.132 9 H 0.134 0.866 10 C -0.162 4.162 11 H 0.150 0.850 12 C -0.069 4.069 13 N -0.234 5.234 14 C -0.085 4.085 15 C 0.225 3.775 16 O -0.502 6.502 17 N -0.209 5.209 18 C -0.462 4.462 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.816 3.184 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.060 4.060 27 C -0.184 4.184 28 H 0.136 0.864 29 C -0.163 4.163 30 C -0.199 4.199 31 C -0.215 4.215 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.252 0.748 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.130 0.870 41 H 0.089 0.911 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.048 0.952 45 H 0.094 0.906 46 H 0.121 0.879 47 H 0.124 0.876 48 H 0.124 0.876 49 H 0.105 0.895 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.143 -5.997 27.394 28.347 hybrid contribution 0.228 1.390 -0.783 1.612 sum -3.915 -4.607 26.610 27.289 Atomic orbital electron populations 1.21756 0.90728 1.02767 1.04251 1.20940 0.98820 1.00132 0.89706 0.86751 1.21210 0.79312 0.84258 0.85383 1.90698 1.39383 1.28126 1.87342 1.45923 1.53775 1.32476 1.04813 1.20631 0.98476 0.95452 0.81826 1.22540 1.01516 0.99791 0.89377 0.86571 1.23641 0.91056 1.01302 1.00201 0.85024 1.22794 0.96445 0.99576 0.88038 1.65380 1.02433 1.38074 1.17518 1.21973 0.97890 0.93973 0.94646 1.20743 0.88969 0.82335 0.85427 1.90455 1.32164 1.51852 1.75733 1.41911 1.21761 1.29759 1.27444 1.19691 1.02564 1.15548 1.08433 0.90354 1.26017 0.99296 0.95370 1.00472 1.69670 1.26804 1.20786 1.38748 0.84881 0.77757 0.78172 0.77587 1.19918 1.19603 1.19567 1.22583 0.92572 0.96079 0.94729 1.23435 0.99542 1.02644 0.92750 0.86446 1.22032 0.95409 1.02095 0.96730 1.23176 1.02536 0.97761 0.96392 1.22752 0.94051 1.01876 1.02858 0.92896 0.89706 0.90538 0.74813 0.91518 0.91987 0.88143 0.92254 0.87019 0.91092 0.76974 0.91280 0.95180 0.90587 0.87946 0.87602 0.87592 0.89494 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.07 71.98 0.65 -0.34 16 2 C -0.07 -0.85 2.88 -11.54 -0.03 -0.88 16 3 H 0.11 0.91 7.90 -2.39 -0.02 0.89 16 4 C 0.51 9.18 7.03 87.66 0.62 9.80 16 5 O -0.58 -15.55 15.09 -3.03 -0.05 -15.60 16 6 N -0.72 -10.12 5.45 -463.07 -2.52 -12.64 16 7 C 0.16 2.80 5.95 86.38 0.51 3.31 16 8 C -0.11 -1.99 5.39 -10.79 -0.06 -2.05 16 9 H 0.12 1.85 8.04 -2.39 -0.02 1.83 16 10 C -0.14 -2.81 6.73 -9.90 -0.07 -2.88 16 11 H 0.13 2.25 8.12 -2.38 -0.02 2.24 16 12 C 0.06 1.28 6.30 86.45 0.54 1.83 16 13 N -0.51 -16.41 5.33 -886.08 -4.73 -21.14 16 14 C 0.05 1.59 5.55 85.56 0.47 2.07 16 15 C 0.44 20.73 7.50 87.66 0.66 21.39 16 16 O -0.62 -33.72 13.24 -3.08 -0.04 -33.76 16 17 N -0.57 -29.16 5.29 -307.00 -1.62 -30.78 16 18 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 20 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 21 N -0.92 -49.18 13.05 21.66 0.28 -48.89 16 22 Si 0.99 42.83 29.55 68.60 2.03 44.86 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 C 0.07 2.27 5.11 86.45 0.44 2.71 16 27 C -0.16 -4.06 6.84 -9.90 -0.07 -4.13 16 28 H 0.12 2.90 8.14 -2.38 -0.02 2.88 16 29 C -0.14 -1.98 4.72 -10.80 -0.05 -2.03 16 30 C -0.16 -1.71 10.18 30.62 0.31 -1.39 16 31 C -0.18 -2.92 8.98 30.62 0.27 -2.64 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 34 H 0.08 0.34 7.56 -2.39 -0.02 0.32 16 35 H 0.41 3.47 7.82 -92.71 -0.73 2.75 16 36 H 0.07 1.27 7.93 -2.39 -0.02 1.25 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.06 1.14 7.82 -2.39 -0.02 1.12 16 40 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 41 H 0.07 2.12 7.88 -2.39 -0.02 2.10 16 42 H 0.40 19.13 7.90 -92.71 -0.73 18.40 16 43 H 0.28 13.86 8.31 -92.70 -0.77 13.09 16 44 H 0.03 1.01 8.00 -2.39 -0.02 0.99 16 45 H 0.08 3.23 6.05 -2.39 -0.01 3.22 16 46 H 0.10 1.47 8.11 -2.39 -0.02 1.45 16 47 H 0.11 0.86 8.05 -2.39 -0.02 0.84 16 48 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 49 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 50 H 0.08 1.47 8.10 -2.39 -0.02 1.45 16 Total: -1.00 -72.72 405.62 -1.66 -74.39 By element: Atomic # 1 Polarization: 37.51 SS G_CDS: -0.51 Total: 37.00 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 5.49 Total: 6.57 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -8.59 Total: -113.46 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -0.09 Total: -49.36 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -72.72 -1.66 -74.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506774433.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.345 kcal (2) G-P(sol) polarization free energy of solvation -72.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds