Wall clock time and date at job start Tue Mar 31 2020 18:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21283 * 120.00472 * 119.99880 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 H 1.08995 * 115.51400 * 29.57925 * 8 7 6 10 10 C 1.52999 * 117.44345 * 244.22681 * 8 7 6 11 11 H 1.08997 * 119.52603 * 4.09199 * 10 8 7 12 12 C 1.54376 * 118.12492 * 160.68286 * 10 8 7 13 13 N 1.48563 * 104.59562 * 87.23375 * 12 10 8 14 14 C 1.46899 * 110.99963 * 200.95647 * 13 12 10 15 15 C 1.50702 * 109.47055 * 189.99895 * 14 13 12 16 16 O 1.21297 * 119.99839 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00195 * 180.02562 * 15 14 13 18 18 C 1.37090 * 120.00002 * 179.97438 * 17 15 14 19 19 H 1.08005 * 120.00339 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99939 * 179.97438 * 18 17 15 21 21 N 1.31405 * 119.99720 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99987 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47230 * 90.00124 * 22 20 18 24 24 H 1.48493 * 109.46884 * 210.00183 * 22 20 18 25 25 H 1.48500 * 109.47097 * 330.00242 * 22 20 18 26 26 C 1.52150 * 104.44024 * 320.24981 * 13 12 10 27 27 C 1.53002 * 117.44294 * 175.00078 * 8 7 6 28 28 H 1.08995 * 119.52795 * 355.90476 * 27 8 7 29 29 C 1.52999 * 109.46768 * 240.00680 * 2 1 3 30 30 C 1.52994 * 117.50234 * 128.74854 * 29 2 1 31 31 C 1.53005 * 117.50059 * 60.08521 * 29 2 1 32 32 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 33 33 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 35 35 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 36 36 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 37 37 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 38 38 H 1.09003 * 110.41202 * 206.01304 * 12 10 8 39 39 H 1.08997 * 110.41460 * 328.44908 * 12 10 8 40 40 H 1.08994 * 109.47472 * 309.99685 * 14 13 12 41 41 H 1.09000 * 109.47153 * 70.00132 * 14 13 12 42 42 H 0.96997 * 119.99672 * 359.97438 * 17 15 14 43 43 H 0.97002 * 119.99756 * 179.97438 * 21 20 18 44 44 H 1.08996 * 111.91296 * 281.08490 * 26 13 12 45 45 H 1.08994 * 110.52604 * 157.51053 * 26 13 12 46 46 H 1.09008 * 115.54874 * 274.41792 * 29 2 1 47 47 H 1.09003 * 117.49858 * 359.97438 * 30 29 2 48 48 H 1.09001 * 117.50349 * 145.02029 * 30 29 2 49 49 H 1.09000 * 117.49785 * 214.98100 * 31 29 2 50 50 H 1.08995 * 117.49629 * 359.97438 * 31 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1190 6 7 1.7068 -0.2502 2.4545 7 6 2.1902 -0.9445 3.6505 8 6 1.6757 -0.2266 4.8999 9 1 0.7202 0.2855 4.7871 10 6 2.7141 0.4151 5.8224 11 1 3.7660 0.4039 5.5370 12 6 2.2381 1.5039 6.8078 13 7 1.8014 0.7529 8.0130 14 6 0.8831 1.5571 8.8303 15 6 0.6559 0.8713 10.1528 16 8 1.2053 -0.1835 10.3912 17 7 -0.1578 1.4298 11.0706 18 6 -0.3649 0.8056 12.2734 19 1 0.1243 -0.1336 12.4858 20 6 -1.2034 1.3818 13.2199 21 7 -1.7982 2.5247 12.9617 22 14 -1.4850 0.5316 14.8592 23 1 -0.4703 0.9964 15.8387 24 1 -2.8436 0.8603 15.3603 25 1 -1.3650 -0.9379 14.6818 26 6 1.0929 -0.4744 7.4592 27 6 1.9762 -0.8683 6.2559 28 1 2.4787 -1.8348 6.2933 29 6 2.0399 -0.7211 -1.2493 30 6 3.0762 0.0040 -2.1102 31 6 1.6372 -0.1481 -2.6097 32 1 -0.3634 0.5139 -0.8898 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3633 0.5137 0.8900 35 1 1.1490 0.5383 2.5436 36 1 1.8264 -1.9720 3.6462 37 1 3.2802 -0.9450 3.6548 38 1 3.0588 2.1770 7.0560 39 1 1.4030 2.0615 6.3840 40 1 1.3170 2.5421 9.0017 41 1 -0.0680 1.6648 8.3087 42 1 -0.5969 2.2735 10.8800 43 1 -2.3839 2.9267 13.6223 44 1 0.0801 -0.2447 7.1283 45 1 1.0797 -1.2745 8.1992 46 1 2.1252 -1.8046 -1.1649 47 1 3.3944 0.9951 -1.7867 48 1 3.8430 -0.6022 -2.5924 49 1 1.4580 -0.8544 -3.4202 50 1 1.0087 0.7424 -2.6145 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506774441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:34 Heat of formation + Delta-G solvation = -14.017243 kcal Electronic energy + Delta-G solvation = -27786.775968 eV Core-core repulsion = 23815.547495 eV Total energy + Delta-G solvation = -3971.228473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.49510 -39.81183 -38.03224 -37.62839 -35.43867 -34.08944 -33.56412 -32.45469 -31.20377 -28.65529 -28.31347 -26.50751 -25.32361 -24.34723 -22.68491 -22.03438 -21.55005 -20.82912 -20.23583 -19.78482 -19.10077 -17.84788 -17.78328 -16.56080 -16.11143 -15.89142 -15.56628 -15.19823 -15.08400 -14.70106 -14.52941 -14.26714 -13.99027 -13.92319 -13.61981 -13.43637 -13.20511 -12.92526 -12.77041 -12.65529 -12.42052 -12.23900 -11.91009 -11.86734 -11.55608 -11.44414 -11.39579 -11.30949 -11.11634 -10.87061 -10.76933 -10.45089 -10.39196 -10.26664 -10.21428 -10.10027 -9.87435 -9.48668 -9.32475 -8.51172 -8.02965 -7.94318 -6.40996 -3.81591 2.34285 2.73574 3.18364 3.26832 3.32570 3.37752 3.45274 3.90166 3.98321 4.13194 4.19928 4.25060 4.29963 4.45466 4.54555 4.62921 4.77189 4.86090 4.90769 4.92997 4.96163 4.99868 5.16050 5.20545 5.23848 5.25773 5.26160 5.35818 5.38485 5.46669 5.50942 5.56627 5.62371 5.66552 5.70580 5.75487 5.82694 5.84785 5.90184 6.05433 6.07826 6.15998 6.27690 6.38162 6.93956 7.15605 7.17401 7.55926 7.91156 8.07206 8.63152 9.19380 9.55671 10.07977 10.76897 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.031824 B = 0.001570 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.627663 B =17827.031174 C =18077.530761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 H 0.097 0.903 4 C 0.519 3.481 5 O -0.537 6.537 6 N -0.727 5.727 7 C 0.153 3.847 8 C -0.146 4.146 9 H 0.106 0.894 10 C -0.152 4.152 11 H 0.118 0.882 12 C 0.058 3.942 13 N -0.481 5.481 14 C 0.032 3.968 15 C 0.446 3.554 16 O -0.576 6.576 17 N -0.566 5.566 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.064 3.936 27 C -0.143 4.143 28 H 0.119 0.881 29 C -0.136 4.136 30 C -0.178 4.178 31 C -0.178 4.178 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.401 0.599 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.391 0.609 43 H 0.271 0.729 44 H 0.047 0.953 45 H 0.102 0.898 46 H 0.116 0.884 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.778 0.506 -28.488 28.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 H 0.115 0.885 4 C 0.305 3.695 5 O -0.414 6.414 6 N -0.379 5.379 7 C 0.030 3.970 8 C -0.164 4.164 9 H 0.124 0.876 10 C -0.171 4.171 11 H 0.136 0.864 12 C -0.070 4.070 13 N -0.205 5.205 14 C -0.100 4.100 15 C 0.231 3.769 16 O -0.459 6.459 17 N -0.203 5.203 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.545 5.545 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.062 4.062 27 C -0.163 4.163 28 H 0.137 0.863 29 C -0.154 4.154 30 C -0.215 4.215 31 C -0.215 4.215 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.236 0.764 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.060 0.940 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.224 0.776 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.121 0.879 46 H 0.134 0.866 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.985 -0.951 -27.880 28.339 hybrid contribution -1.408 0.960 0.385 1.746 sum 3.577 0.008 -27.496 27.727 Atomic orbital electron populations 1.21763 0.92422 1.03100 1.02706 1.20862 0.97487 0.99974 0.91813 0.88511 1.20538 0.79969 0.84567 0.84436 1.90705 1.37612 1.26306 1.86744 1.46009 1.54154 1.32183 1.05573 1.20821 0.99119 0.95625 0.81426 1.22669 0.99824 1.03229 0.90726 0.87646 1.23561 0.97716 0.95434 1.00378 0.86373 1.22654 0.99756 0.94909 0.89649 1.66386 1.34449 1.04838 1.14849 1.22056 0.95347 0.97608 0.95009 1.19689 0.83874 0.87588 0.85763 1.90516 1.51928 1.23830 1.79653 1.41857 1.41234 1.22747 1.14506 1.19700 1.25688 1.06333 0.91043 0.87935 1.25247 0.96590 0.96158 0.99953 1.69610 1.30983 1.17527 1.36343 0.85862 0.77452 0.79593 0.81415 1.20411 1.20973 1.19442 1.23326 0.93810 0.94849 0.94235 1.23474 1.02668 0.97851 0.92290 0.86330 1.22046 1.03560 1.00150 0.89677 1.23028 0.92580 1.01872 1.03978 1.22991 0.98193 1.03249 0.97078 0.91208 0.91790 0.92003 0.76442 0.90765 0.91033 0.89566 0.93989 0.89333 0.93217 0.77564 0.91929 0.93509 0.87947 0.86604 0.88864 0.88703 0.88660 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 8.93 37.16 0.33 -0.36 16 2 C -0.08 -0.51 2.88 -91.77 -0.26 -0.78 16 3 H 0.10 0.49 7.90 -51.93 -0.41 0.08 16 4 C 0.52 4.86 7.15 -10.99 -0.08 4.78 16 5 O -0.54 -7.26 15.65 5.55 0.09 -7.17 16 6 N -0.73 -5.56 5.45 -60.29 -0.33 -5.89 16 7 C 0.15 1.37 5.95 -4.04 -0.02 1.35 16 8 C -0.15 -1.33 5.38 -90.62 -0.49 -1.81 16 9 H 0.11 0.90 8.04 -51.93 -0.42 0.48 16 10 C -0.15 -1.62 6.74 -89.24 -0.60 -2.22 16 11 H 0.12 1.17 8.12 -51.93 -0.42 0.75 16 12 C 0.06 0.71 6.27 -2.18 -0.01 0.70 16 13 N -0.48 -7.91 5.03 -228.13 -1.15 -9.06 16 14 C 0.03 0.56 5.32 -4.98 -0.03 0.53 16 15 C 0.45 10.51 7.63 -10.98 -0.08 10.43 16 16 O -0.58 -15.62 14.85 5.54 0.08 -15.54 16 17 N -0.57 -14.32 5.29 -10.96 -0.06 -14.38 16 18 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 19 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 22 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 C 0.06 0.98 5.91 -0.10 0.00 0.98 16 27 C -0.14 -1.70 6.75 -89.24 -0.60 -2.30 16 28 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 29 C -0.14 -0.99 4.75 -90.62 -0.43 -1.42 16 30 C -0.18 -1.13 10.18 -26.69 -0.27 -1.40 16 31 C -0.18 -0.97 9.74 -26.69 -0.26 -1.23 16 32 H 0.07 0.27 7.29 -51.93 -0.38 -0.11 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.23 7.56 -51.93 -0.39 -0.16 16 35 H 0.40 2.10 7.82 -40.82 -0.32 1.78 16 36 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.07 0.70 7.94 -51.93 -0.41 0.29 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.04 0.46 8.00 -51.93 -0.42 0.05 16 40 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 41 H 0.05 0.79 7.85 -51.93 -0.41 0.38 16 42 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.05 0.67 7.88 -51.93 -0.41 0.26 16 45 H 0.10 1.86 7.32 -51.93 -0.38 1.48 16 46 H 0.12 1.07 7.47 -51.92 -0.39 0.68 16 47 H 0.09 0.53 8.05 -51.93 -0.42 0.11 16 48 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.09 0.41 7.61 -51.93 -0.40 0.02 16 LS Contribution 408.11 15.07 6.15 6.15 Total: -1.00 -33.41 408.11 -10.92 -44.34 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -8.35 Total: 10.00 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -3.05 Total: -0.71 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.81 Total: -53.10 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: 0.17 Total: -22.71 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.41 -10.92 -44.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506774441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.320 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds