Wall clock time and date at job start Tue Mar 31 2020 18:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21283 * 120.00472 * 119.99880 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 H 1.08995 * 115.51400 * 29.57925 * 8 7 6 10 10 C 1.52999 * 117.44345 * 244.22681 * 8 7 6 11 11 H 1.08997 * 119.52603 * 4.09199 * 10 8 7 12 12 C 1.54376 * 118.12492 * 160.68286 * 10 8 7 13 13 N 1.48563 * 104.59562 * 87.23375 * 12 10 8 14 14 C 1.46899 * 110.99963 * 200.95647 * 13 12 10 15 15 C 1.50702 * 109.47055 * 189.99895 * 14 13 12 16 16 O 1.21297 * 119.99839 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00195 * 180.02562 * 15 14 13 18 18 C 1.37090 * 120.00002 * 179.97438 * 17 15 14 19 19 H 1.08005 * 120.00339 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99939 * 179.97438 * 18 17 15 21 21 N 1.31405 * 119.99720 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99987 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47230 * 90.00124 * 22 20 18 24 24 H 1.48493 * 109.46884 * 210.00183 * 22 20 18 25 25 H 1.48500 * 109.47097 * 330.00242 * 22 20 18 26 26 C 1.52150 * 104.44024 * 320.24981 * 13 12 10 27 27 C 1.53002 * 117.44294 * 175.00078 * 8 7 6 28 28 H 1.08995 * 119.52795 * 355.90476 * 27 8 7 29 29 C 1.52999 * 109.46768 * 240.00680 * 2 1 3 30 30 C 1.52994 * 117.50234 * 128.74854 * 29 2 1 31 31 C 1.53005 * 117.50059 * 60.08521 * 29 2 1 32 32 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 33 33 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 35 35 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 36 36 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 37 37 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 38 38 H 1.09003 * 110.41202 * 206.01304 * 12 10 8 39 39 H 1.08997 * 110.41460 * 328.44908 * 12 10 8 40 40 H 1.08994 * 109.47472 * 309.99685 * 14 13 12 41 41 H 1.09000 * 109.47153 * 70.00132 * 14 13 12 42 42 H 0.96997 * 119.99672 * 359.97438 * 17 15 14 43 43 H 0.97002 * 119.99756 * 179.97438 * 21 20 18 44 44 H 1.08996 * 111.91296 * 281.08490 * 26 13 12 45 45 H 1.08994 * 110.52604 * 157.51053 * 26 13 12 46 46 H 1.09008 * 115.54874 * 274.41792 * 29 2 1 47 47 H 1.09003 * 117.49858 * 359.97438 * 30 29 2 48 48 H 1.09001 * 117.50349 * 145.02029 * 30 29 2 49 49 H 1.09000 * 117.49785 * 214.98100 * 31 29 2 50 50 H 1.08995 * 117.49629 * 359.97438 * 31 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1190 6 7 1.7068 -0.2502 2.4545 7 6 2.1902 -0.9445 3.6505 8 6 1.6757 -0.2266 4.8999 9 1 0.7202 0.2855 4.7871 10 6 2.7141 0.4151 5.8224 11 1 3.7660 0.4039 5.5370 12 6 2.2381 1.5039 6.8078 13 7 1.8014 0.7529 8.0130 14 6 0.8831 1.5571 8.8303 15 6 0.6559 0.8713 10.1528 16 8 1.2053 -0.1835 10.3912 17 7 -0.1578 1.4298 11.0706 18 6 -0.3649 0.8056 12.2734 19 1 0.1243 -0.1336 12.4858 20 6 -1.2034 1.3818 13.2199 21 7 -1.7982 2.5247 12.9617 22 14 -1.4850 0.5316 14.8592 23 1 -0.4703 0.9964 15.8387 24 1 -2.8436 0.8603 15.3603 25 1 -1.3650 -0.9379 14.6818 26 6 1.0929 -0.4744 7.4592 27 6 1.9762 -0.8683 6.2559 28 1 2.4787 -1.8348 6.2933 29 6 2.0399 -0.7211 -1.2493 30 6 3.0762 0.0040 -2.1102 31 6 1.6372 -0.1481 -2.6097 32 1 -0.3634 0.5139 -0.8898 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3633 0.5137 0.8900 35 1 1.1490 0.5383 2.5436 36 1 1.8264 -1.9720 3.6462 37 1 3.2802 -0.9450 3.6548 38 1 3.0588 2.1770 7.0560 39 1 1.4030 2.0615 6.3840 40 1 1.3170 2.5421 9.0017 41 1 -0.0680 1.6648 8.3087 42 1 -0.5969 2.2735 10.8800 43 1 -2.3839 2.9267 13.6223 44 1 0.0801 -0.2447 7.1283 45 1 1.0797 -1.2745 8.1992 46 1 2.1252 -1.8046 -1.1649 47 1 3.3944 0.9951 -1.7867 48 1 3.8430 -0.6022 -2.5924 49 1 1.4580 -0.8544 -3.4202 50 1 1.0087 0.7424 -2.6145 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506774441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:33 Heat of formation + Delta-G solvation = -37.455917 kcal Electronic energy + Delta-G solvation = -27787.792345 eV Core-core repulsion = 23815.547495 eV Total energy + Delta-G solvation = -3972.244850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.30735 -40.78984 -39.75843 -38.22134 -36.46926 -35.86785 -34.72795 -33.26181 -32.98268 -29.80747 -29.36891 -27.73087 -26.29240 -25.62256 -23.19851 -23.09420 -22.25638 -21.65198 -21.25054 -20.86440 -20.42605 -19.84416 -18.44566 -17.71751 -17.32458 -16.84639 -16.60275 -16.36336 -16.19010 -16.01779 -15.65242 -15.49163 -15.13729 -14.81195 -14.62419 -14.59928 -14.32011 -13.88684 -13.80059 -13.51342 -13.48556 -13.16857 -13.12661 -12.95705 -12.87971 -12.53904 -12.41947 -12.29719 -12.26271 -12.14667 -12.09205 -11.85124 -11.48728 -11.27367 -11.12620 -11.00469 -10.90726 -10.65502 -10.30785 -10.07295 -9.99683 -9.33373 -8.46005 -5.94386 1.38026 1.41663 1.54155 1.64003 2.05499 2.07475 2.28702 2.54775 2.82000 2.94718 3.20837 3.32505 3.41222 3.64462 3.66477 3.72410 3.99473 4.02119 4.11454 4.13855 4.15043 4.23190 4.29925 4.35849 4.42533 4.46620 4.49976 4.53226 4.57021 4.58894 4.68481 4.74061 4.80340 4.89448 4.95258 4.99670 5.05488 5.08150 5.18507 5.25789 5.27278 5.31848 5.36046 5.41447 5.46507 5.74637 5.89339 6.09668 6.55278 6.62213 7.14380 7.25392 7.58017 8.14725 8.71436 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.031824 B = 0.001570 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.627663 B =17827.031174 C =18077.530761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 H 0.119 0.881 4 C 0.514 3.486 5 O -0.586 6.586 6 N -0.714 5.714 7 C 0.158 3.842 8 C -0.110 4.110 9 H 0.123 0.877 10 C -0.145 4.145 11 H 0.128 0.872 12 C 0.060 3.940 13 N -0.511 5.511 14 C 0.046 3.954 15 C 0.441 3.559 16 O -0.618 6.618 17 N -0.575 5.575 18 C -0.333 4.333 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.274 1.274 26 C 0.065 3.935 27 C -0.162 4.162 28 H 0.115 0.885 29 C -0.155 4.155 30 C -0.185 4.185 31 C -0.161 4.161 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.417 0.583 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.088 0.912 49 H 0.097 0.903 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.918 2.698 -30.072 30.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.093 4.093 3 H 0.137 0.863 4 C 0.302 3.698 5 O -0.466 6.466 6 N -0.367 5.367 7 C 0.034 3.966 8 C -0.129 4.129 9 H 0.141 0.859 10 C -0.163 4.163 11 H 0.146 0.854 12 C -0.067 4.067 13 N -0.236 5.236 14 C -0.086 4.086 15 C 0.229 3.771 16 O -0.503 6.503 17 N -0.213 5.213 18 C -0.463 4.463 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.197 1.197 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.061 4.061 27 C -0.181 4.181 28 H 0.133 0.867 29 C -0.173 4.173 30 C -0.222 4.222 31 C -0.198 4.198 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.254 0.746 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.128 0.872 41 H 0.091 0.909 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.105 0.895 47 H 0.122 0.878 48 H 0.107 0.893 49 H 0.116 0.884 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.100 1.296 -29.480 29.792 hybrid contribution -1.093 0.238 0.844 1.401 sum 3.007 1.534 -28.636 28.834 Atomic orbital electron populations 1.21782 0.90977 1.02669 1.04284 1.20873 0.98490 1.00276 0.89620 0.86326 1.21139 0.79106 0.83991 0.85537 1.90688 1.39921 1.28566 1.87434 1.45884 1.53751 1.32321 1.04713 1.20666 0.98730 0.95329 0.81907 1.22550 0.99948 1.01281 0.89093 0.85891 1.23620 0.98636 0.93804 1.00266 0.85386 1.22720 1.00727 0.95058 0.88231 1.66306 1.34447 1.05697 1.17135 1.21893 0.97176 0.97623 0.91901 1.20812 0.82047 0.86991 0.87289 1.90489 1.53125 1.25829 1.80901 1.41920 1.42010 1.22979 1.14389 1.19643 1.27236 1.06388 0.93035 0.90533 1.25995 0.95701 0.96683 1.02748 1.69665 1.30910 1.18080 1.37446 0.84951 0.77982 0.78186 0.77356 1.19707 1.19442 1.19932 1.23154 0.95028 0.93563 0.94396 1.23310 1.03375 0.98499 0.92965 0.86665 1.21990 1.05223 0.98892 0.91223 1.23113 0.93035 1.02090 1.03922 1.23068 0.97511 1.03520 0.95654 0.89614 0.93231 0.90453 0.74600 0.91783 0.91732 0.88747 0.91770 0.87191 0.90881 0.77010 0.91325 0.92622 0.92161 0.89466 0.87842 0.89332 0.88405 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.93 71.98 0.64 -0.34 16 2 C -0.07 -0.78 2.88 -11.54 -0.03 -0.81 16 3 H 0.12 0.79 7.90 -2.39 -0.02 0.78 16 4 C 0.51 9.07 7.15 87.66 0.63 9.70 16 5 O -0.59 -16.09 15.65 -3.04 -0.05 -16.14 16 6 N -0.71 -9.33 5.45 -463.05 -2.52 -11.85 16 7 C 0.16 2.57 5.95 86.38 0.51 3.09 16 8 C -0.11 -1.73 5.38 -10.79 -0.06 -1.78 16 9 H 0.12 1.59 8.04 -2.39 -0.02 1.57 16 10 C -0.14 -2.73 6.74 -9.90 -0.07 -2.80 16 11 H 0.13 2.21 8.12 -2.39 -0.02 2.19 16 12 C 0.06 1.29 6.27 86.45 0.54 1.83 16 13 N -0.51 -16.30 5.03 -875.67 -4.40 -20.70 16 14 C 0.05 1.56 5.32 85.56 0.46 2.01 16 15 C 0.44 21.18 7.63 87.66 0.67 21.85 16 16 O -0.62 -34.84 14.85 -3.08 -0.05 -34.89 16 17 N -0.58 -29.61 5.29 -306.98 -1.62 -31.24 16 18 C -0.33 -19.08 9.68 84.04 0.81 -18.26 16 19 H 0.08 4.70 7.16 -2.91 -0.02 4.67 16 20 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 21 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 22 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 C 0.07 1.99 5.91 85.73 0.51 2.50 16 27 C -0.16 -3.71 6.75 -9.90 -0.07 -3.78 16 28 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 29 C -0.15 -2.14 4.75 -10.79 -0.05 -2.19 16 30 C -0.18 -2.14 10.18 30.62 0.31 -1.83 16 31 C -0.16 -1.44 9.74 30.62 0.30 -1.14 16 32 H 0.09 0.36 7.29 -2.39 -0.02 0.34 16 33 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.08 0.31 7.56 -2.39 -0.02 0.29 16 35 H 0.42 2.86 7.82 -92.71 -0.73 2.14 16 36 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.06 1.19 7.94 -2.39 -0.02 1.17 16 38 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.13 8.00 -2.39 -0.02 1.12 16 40 H 0.11 3.27 8.08 -2.39 -0.02 3.25 16 41 H 0.07 2.15 7.85 -2.39 -0.02 2.14 16 42 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 43 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 44 H 0.06 1.55 7.88 -2.39 -0.02 1.53 16 45 H 0.06 2.32 7.32 -2.39 -0.02 2.30 16 46 H 0.09 1.71 7.47 -2.38 -0.02 1.69 16 47 H 0.10 0.97 8.05 -2.39 -0.02 0.95 16 48 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.11 0.61 7.61 -2.39 -0.02 0.59 16 Total: -1.00 -75.67 408.11 -1.26 -76.93 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -0.50 Total: 34.04 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 5.57 Total: 7.89 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -8.26 Total: -112.98 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -0.09 Total: -51.03 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -75.67 -1.26 -76.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506774441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.473 kcal (2) G-P(sol) polarization free energy of solvation -75.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds