Wall clock time and date at job start Tue Mar 31 2020 18:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47131 * 2 1 4 4 C 1.53002 * 109.46981 * 119.99872 * 2 1 3 5 5 C 1.50699 * 109.46975 * 294.99771 * 4 2 1 6 6 C 1.34516 * 125.78778 * 90.02515 * 5 4 2 7 7 C 1.41388 * 106.84125 * 179.97438 * 6 5 4 8 8 C 1.34522 * 106.84043 * 359.97438 * 7 6 5 9 9 O 1.34306 * 125.78870 * 269.97484 * 5 4 2 10 10 C 1.50696 * 109.47078 * 239.99581 * 2 1 3 11 11 O 1.21282 * 120.00309 * 240.00236 * 10 2 1 12 12 N 1.34784 * 119.99803 * 60.00109 * 10 2 1 13 13 C 1.46493 * 120.00092 * 179.97438 * 12 10 2 14 14 C 1.52993 * 109.47438 * 180.02562 * 13 12 10 15 15 N 1.46898 * 109.47335 * 180.02562 * 14 13 12 16 16 C 1.46902 * 110.99798 * 294.29834 * 15 14 13 17 17 C 1.53248 * 109.33769 * 172.74736 * 16 15 14 18 18 N 1.47074 * 108.51900 * 53.83249 * 17 16 15 19 19 C 1.36939 * 120.88020 * 128.83953 * 18 17 16 20 20 H 1.08001 * 119.99776 * 206.56094 * 19 18 17 21 21 C 1.38810 * 120.00357 * 26.55974 * 19 18 17 22 22 N 1.31617 * 119.99796 * 17.01767 * 21 19 18 23 23 Si 1.86797 * 120.00261 * 197.02071 * 21 19 18 24 24 H 1.48500 * 109.47266 * 59.99536 * 23 21 19 25 25 H 1.48503 * 109.46956 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46865 * 299.99815 * 23 21 19 27 27 C 1.47079 * 118.24096 * 308.81287 * 18 17 16 28 28 C 1.46911 * 111.00065 * 169.99956 * 15 14 13 29 29 H 1.09003 * 109.47007 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46902 * 300.00310 * 1 2 3 31 31 H 1.08997 * 109.47171 * 60.00240 * 1 2 3 32 32 H 1.09006 * 109.46913 * 174.99994 * 4 2 1 33 33 H 1.08997 * 109.47249 * 55.00216 * 4 2 1 34 34 H 1.08001 * 126.58089 * 359.95436 * 6 5 4 35 35 H 1.07993 * 126.58032 * 180.26231 * 7 6 5 36 36 H 1.07990 * 125.78852 * 180.02562 * 8 7 6 37 37 H 0.97002 * 119.99842 * 0.02562 * 12 10 2 38 38 H 1.09007 * 109.47307 * 299.99869 * 13 12 10 39 39 H 1.09005 * 109.47221 * 59.99646 * 13 12 10 40 40 H 1.09004 * 109.46967 * 299.99712 * 14 13 12 41 41 H 1.09005 * 109.47311 * 59.99570 * 14 13 12 42 42 H 1.08996 * 109.49544 * 292.70555 * 16 15 14 43 43 H 1.08997 * 109.49121 * 52.79353 * 16 15 14 44 44 H 1.08995 * 109.62708 * 294.12115 * 17 16 15 45 45 H 1.09000 * 109.62424 * 173.53786 * 17 16 15 46 46 H 0.96994 * 120.00361 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.62871 * 291.47931 * 27 18 17 48 48 H 1.08995 * 109.79177 * 170.99497 * 27 18 17 49 49 H 1.08994 * 109.48773 * 307.21096 * 28 15 14 50 50 H 1.09000 * 109.48850 * 67.29382 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 6 0.5011 -0.1010 3.1724 7 6 0.5397 0.8268 4.2386 8 6 1.7017 1.4960 4.1308 9 8 2.3647 1.0258 3.0616 10 6 2.0323 -0.7105 -1.2304 11 8 2.7296 -1.6966 -1.1191 12 7 1.7067 -0.2500 -2.4546 13 6 2.1954 -0.9403 -3.6507 14 6 1.6859 -0.2189 -4.8999 15 7 2.1755 -0.9115 -6.0993 16 6 3.6377 -0.8146 -6.2031 17 6 4.1239 -1.6962 -7.3585 18 7 3.3878 -1.3199 -8.5749 19 6 4.0518 -1.0328 -9.7377 20 1 3.6045 -0.3725 -10.4660 21 6 5.2997 -1.5902 -9.9802 22 7 5.7013 -2.6326 -9.2841 23 14 6.4089 -0.8611 -11.2944 24 1 6.7072 0.5549 -10.9607 25 1 7.6760 -1.6331 -11.3568 26 1 5.7251 -0.9258 -12.6110 27 6 1.9196 -1.2607 -8.5097 28 6 1.5202 -0.3964 -7.3091 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1264 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2952 34 1 -0.2920 -0.8020 2.9576 35 1 -0.2161 0.9676 4.9969 36 1 2.0433 2.2786 4.7919 37 1 1.1494 0.5389 -2.5436 38 1 3.2855 -0.9399 -3.6506 39 1 1.8326 -1.9682 -3.6508 40 1 0.5959 -0.2190 -4.9003 41 1 2.0492 0.8089 -4.8996 42 1 3.9212 0.2208 -6.3914 43 1 4.0915 -1.1529 -5.2716 44 1 3.9339 -2.7437 -7.1248 45 1 5.1915 -1.5404 -7.5136 46 1 6.5734 -3.0219 -9.4533 47 1 1.5177 -2.2664 -8.3867 48 1 1.5270 -0.8191 -9.4256 49 1 0.4385 -0.4313 -7.1795 50 1 1.8333 0.6333 -7.4819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566653281.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:14 Heat of formation + Delta-G solvation = 4.404969 kcal Electronic energy + Delta-G solvation = -28361.513578 eV Core-core repulsion = 24391.083952 eV Total energy + Delta-G solvation = -3970.429626 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.91098 -40.10273 -38.25330 -35.71871 -35.26532 -33.98515 -33.19223 -31.50763 -30.43616 -29.94684 -28.72966 -26.98328 -26.00183 -23.94670 -23.06905 -22.52801 -22.04879 -21.34625 -20.80884 -20.03225 -19.10912 -17.85854 -17.13820 -16.84040 -16.43552 -16.00318 -15.85907 -15.11228 -14.90786 -14.83214 -14.45217 -14.28431 -13.97356 -13.59155 -13.49572 -13.42465 -13.22403 -13.13670 -12.96201 -12.91335 -12.79533 -12.48096 -12.22412 -11.74258 -11.60931 -11.46040 -11.42439 -11.29188 -11.04867 -10.72947 -10.48377 -10.31836 -10.23774 -10.05916 -9.94678 -9.74779 -9.62587 -9.11794 -8.78022 -8.49989 -7.90031 -6.66471 -5.77105 -3.18549 1.38423 2.26887 2.48170 2.62443 3.02321 3.38858 3.44862 3.45726 4.19930 4.35344 4.43436 4.50995 4.51606 4.63415 4.70486 4.79202 4.90235 5.02007 5.15955 5.23684 5.30757 5.35744 5.40202 5.42202 5.49530 5.50323 5.62108 5.62208 5.75247 5.81534 5.82771 5.89729 5.95310 6.05465 6.10127 6.17084 6.19793 6.30422 6.34182 6.53369 6.68245 6.81804 6.92063 7.23502 7.31670 7.53531 7.63429 7.69335 7.81435 8.06437 8.44247 9.21933 9.85344 10.43814 11.31709 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028340 B = 0.001721 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.753849 B =16267.718455 C =16732.435062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 H 0.100 0.900 4 C -0.023 4.023 5 C -0.005 4.005 6 C -0.209 4.209 7 C -0.214 4.214 8 C -0.045 4.045 9 O -0.176 6.176 10 C 0.518 3.482 11 O -0.536 6.536 12 N -0.727 5.727 13 C 0.120 3.880 14 C 0.045 3.955 15 N -0.529 5.529 16 C 0.031 3.969 17 C 0.178 3.822 18 N -0.595 5.595 19 C -0.254 4.254 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.903 3.097 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.148 3.852 28 C 0.046 3.954 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.201 0.799 37 H 0.398 0.602 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.026 0.974 43 H 0.064 0.936 44 H 0.028 0.972 45 H 0.089 0.911 46 H 0.255 0.745 47 H 0.026 0.974 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.931 9.236 24.949 29.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.128 4.128 3 H 0.118 0.882 4 C -0.061 4.061 5 C -0.055 4.055 6 C -0.229 4.229 7 C -0.233 4.233 8 C -0.113 4.113 9 O -0.072 6.072 10 C 0.303 3.697 11 O -0.412 6.412 12 N -0.378 5.378 13 C -0.003 4.003 14 C -0.084 4.084 15 N -0.254 5.254 16 C -0.098 4.098 17 C 0.052 3.948 18 N -0.318 5.318 19 C -0.384 4.384 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.733 3.267 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.022 3.978 28 C -0.083 4.083 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.218 0.782 37 H 0.232 0.768 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.044 0.956 43 H 0.082 0.918 44 H 0.046 0.954 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.044 0.956 48 H 0.074 0.926 49 H 0.080 0.920 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -12.085 8.003 24.888 28.802 hybrid contribution 0.300 1.678 -0.558 1.794 sum -11.785 9.681 24.330 28.715 Atomic orbital electron populations 1.21881 0.92414 1.03164 1.03114 1.21275 0.98105 1.01074 0.92363 0.88154 1.19943 1.03488 0.96797 0.85831 1.22430 0.92177 0.92905 0.97962 1.21620 0.99458 1.03894 0.97880 1.21849 0.99594 0.99982 1.01898 1.24039 0.93663 1.02403 0.91191 1.84043 1.44426 1.43102 1.35606 1.20426 0.80199 0.84639 0.84434 1.90744 1.37575 1.26153 1.86733 1.45953 1.53846 1.32136 1.05908 1.21401 0.99792 0.96899 0.82250 1.22195 0.99966 0.95423 0.90818 1.61881 1.07053 1.55294 1.01217 1.23009 0.86113 0.99713 1.00976 1.20870 0.97483 0.94229 0.82251 1.44109 0.99282 1.80598 1.07850 1.19146 1.00565 1.21683 0.96979 0.91697 1.25025 0.99997 0.95975 0.98684 1.70015 1.20370 1.21042 1.43261 0.86365 0.80210 0.78588 0.81571 1.21145 1.21596 1.20895 1.20968 0.86484 0.96462 0.93929 1.22627 0.97031 0.97381 0.91269 0.91682 0.90937 0.91856 0.88970 0.87951 0.83443 0.83542 0.78226 0.76789 0.91031 0.90368 0.90904 0.95031 0.95613 0.91768 0.95429 0.89307 0.93519 0.95613 0.92564 0.91988 0.95364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.80 37.16 0.33 -0.57 16 2 C -0.11 -0.84 2.71 -91.77 -0.25 -1.09 16 3 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.02 -0.20 4.57 -27.88 -0.13 -0.33 16 5 C 0.00 -0.04 6.05 -35.62 -0.22 -0.25 16 6 C -0.21 -1.62 9.41 -39.70 -0.37 -1.99 16 7 C -0.21 -1.50 10.91 -39.70 -0.43 -1.93 16 8 C -0.05 -0.31 12.09 29.42 0.36 0.04 16 9 O -0.18 -1.64 10.65 5.68 0.06 -1.58 16 10 C 0.52 5.78 7.15 -10.98 -0.08 5.70 16 11 O -0.54 -8.27 15.92 5.56 0.09 -8.18 16 12 N -0.73 -7.27 5.45 -60.30 -0.33 -7.60 16 13 C 0.12 1.55 5.60 -4.05 -0.02 1.53 16 14 C 0.04 0.58 5.07 -3.83 -0.02 0.56 16 15 N -0.53 -9.12 4.63 -234.31 -1.08 -10.20 16 16 C 0.03 0.60 5.46 -3.69 -0.02 0.58 16 17 C 0.18 4.33 5.42 -3.60 -0.02 4.31 16 18 N -0.60 -15.12 3.04 -172.02 -0.52 -15.64 16 19 C -0.25 -7.02 9.63 -15.06 -0.15 -7.17 16 20 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 21 C 0.00 0.05 4.94 -17.43 -0.09 -0.04 16 22 N -0.90 -26.42 11.15 55.49 0.62 -25.80 16 23 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 C 0.15 3.13 6.69 -3.60 -0.02 3.11 16 28 C 0.05 0.80 5.62 -3.70 -0.02 0.78 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.42 6.41 -51.93 -0.33 0.08 16 31 H 0.06 0.31 7.56 -51.93 -0.39 -0.08 16 32 H 0.09 0.89 7.96 -51.93 -0.41 0.48 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 36 H 0.20 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.40 2.81 7.89 -40.82 -0.32 2.48 16 38 H 0.07 1.06 6.40 -51.93 -0.33 0.73 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.07 0.82 7.97 -51.93 -0.41 0.40 16 41 H 0.03 0.40 8.13 -51.93 -0.42 -0.02 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.06 1.16 6.16 -51.93 -0.32 0.84 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 2.39 6.12 -51.93 -0.32 2.08 16 46 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 49 H 0.06 0.90 7.99 -51.93 -0.41 0.49 16 50 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 397.92 15.07 6.00 6.00 Total: -1.00 -33.24 397.92 -9.65 -42.89 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -8.29 Total: 0.13 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -1.15 Total: 3.25 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -1.32 Total: -59.24 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.15 Total: -9.76 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.24 -9.65 -42.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566653281.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.293 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds