Wall clock time and date at job start Tue Mar 31 2020 18:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47131 * 2 1 4 4 C 1.53002 * 109.46981 * 119.99872 * 2 1 3 5 5 C 1.50699 * 109.46975 * 294.99771 * 4 2 1 6 6 C 1.34516 * 125.78778 * 90.02515 * 5 4 2 7 7 C 1.41388 * 106.84125 * 179.97438 * 6 5 4 8 8 C 1.34522 * 106.84043 * 359.97438 * 7 6 5 9 9 O 1.34306 * 125.78870 * 269.97484 * 5 4 2 10 10 C 1.50696 * 109.47078 * 239.99581 * 2 1 3 11 11 O 1.21282 * 120.00309 * 240.00236 * 10 2 1 12 12 N 1.34784 * 119.99803 * 60.00109 * 10 2 1 13 13 C 1.46493 * 120.00092 * 179.97438 * 12 10 2 14 14 C 1.52993 * 109.47438 * 180.02562 * 13 12 10 15 15 N 1.46898 * 109.47335 * 180.02562 * 14 13 12 16 16 C 1.46902 * 110.99798 * 294.29834 * 15 14 13 17 17 C 1.53248 * 109.33769 * 172.74736 * 16 15 14 18 18 N 1.47074 * 108.51900 * 53.83249 * 17 16 15 19 19 C 1.36939 * 120.88020 * 128.83953 * 18 17 16 20 20 H 1.08001 * 119.99776 * 206.56094 * 19 18 17 21 21 C 1.38810 * 120.00357 * 26.55974 * 19 18 17 22 22 N 1.31617 * 119.99796 * 17.01767 * 21 19 18 23 23 Si 1.86797 * 120.00261 * 197.02071 * 21 19 18 24 24 H 1.48500 * 109.47266 * 59.99536 * 23 21 19 25 25 H 1.48503 * 109.46956 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46865 * 299.99815 * 23 21 19 27 27 C 1.47079 * 118.24096 * 308.81287 * 18 17 16 28 28 C 1.46911 * 111.00065 * 169.99956 * 15 14 13 29 29 H 1.09003 * 109.47007 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46902 * 300.00310 * 1 2 3 31 31 H 1.08997 * 109.47171 * 60.00240 * 1 2 3 32 32 H 1.09006 * 109.46913 * 174.99994 * 4 2 1 33 33 H 1.08997 * 109.47249 * 55.00216 * 4 2 1 34 34 H 1.08001 * 126.58089 * 359.95436 * 6 5 4 35 35 H 1.07993 * 126.58032 * 180.26231 * 7 6 5 36 36 H 1.07990 * 125.78852 * 180.02562 * 8 7 6 37 37 H 0.97002 * 119.99842 * 0.02562 * 12 10 2 38 38 H 1.09007 * 109.47307 * 299.99869 * 13 12 10 39 39 H 1.09005 * 109.47221 * 59.99646 * 13 12 10 40 40 H 1.09004 * 109.46967 * 299.99712 * 14 13 12 41 41 H 1.09005 * 109.47311 * 59.99570 * 14 13 12 42 42 H 1.08996 * 109.49544 * 292.70555 * 16 15 14 43 43 H 1.08997 * 109.49121 * 52.79353 * 16 15 14 44 44 H 1.08995 * 109.62708 * 294.12115 * 17 16 15 45 45 H 1.09000 * 109.62424 * 173.53786 * 17 16 15 46 46 H 0.96994 * 120.00361 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.62871 * 291.47931 * 27 18 17 48 48 H 1.08995 * 109.79177 * 170.99497 * 27 18 17 49 49 H 1.08994 * 109.48773 * 307.21096 * 28 15 14 50 50 H 1.09000 * 109.48850 * 67.29382 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 6 0.5011 -0.1010 3.1724 7 6 0.5397 0.8268 4.2386 8 6 1.7017 1.4960 4.1308 9 8 2.3647 1.0258 3.0616 10 6 2.0323 -0.7105 -1.2304 11 8 2.7296 -1.6966 -1.1191 12 7 1.7067 -0.2500 -2.4546 13 6 2.1954 -0.9403 -3.6507 14 6 1.6859 -0.2189 -4.8999 15 7 2.1755 -0.9115 -6.0993 16 6 3.6377 -0.8146 -6.2031 17 6 4.1239 -1.6962 -7.3585 18 7 3.3878 -1.3199 -8.5749 19 6 4.0518 -1.0328 -9.7377 20 1 3.6045 -0.3725 -10.4660 21 6 5.2997 -1.5902 -9.9802 22 7 5.7013 -2.6326 -9.2841 23 14 6.4089 -0.8611 -11.2944 24 1 6.7072 0.5549 -10.9607 25 1 7.6760 -1.6331 -11.3568 26 1 5.7251 -0.9258 -12.6110 27 6 1.9196 -1.2607 -8.5097 28 6 1.5202 -0.3964 -7.3091 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1264 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2952 34 1 -0.2920 -0.8020 2.9576 35 1 -0.2161 0.9676 4.9969 36 1 2.0433 2.2786 4.7919 37 1 1.1494 0.5389 -2.5436 38 1 3.2855 -0.9399 -3.6506 39 1 1.8326 -1.9682 -3.6508 40 1 0.5959 -0.2190 -4.9003 41 1 2.0492 0.8089 -4.8996 42 1 3.9212 0.2208 -6.3914 43 1 4.0915 -1.1529 -5.2716 44 1 3.9339 -2.7437 -7.1248 45 1 5.1915 -1.5404 -7.5136 46 1 6.5734 -3.0219 -9.4533 47 1 1.5177 -2.2664 -8.3867 48 1 1.5270 -0.8191 -9.4256 49 1 0.4385 -0.4313 -7.1795 50 1 1.8333 0.6333 -7.4819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566653281.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:13 Heat of formation + Delta-G solvation = -18.369137 kcal Electronic energy + Delta-G solvation = -28362.501137 eV Core-core repulsion = 24391.083952 eV Total energy + Delta-G solvation = -3971.417185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.48098 -41.02837 -39.74391 -36.93986 -36.14389 -35.44285 -33.76644 -33.29014 -31.65654 -31.21263 -29.96635 -27.63582 -27.53255 -25.24496 -24.42255 -24.06532 -22.60701 -22.56926 -21.49782 -20.91902 -20.70728 -18.75327 -18.49630 -17.80098 -17.42768 -16.94019 -16.82320 -16.63468 -16.07727 -15.95548 -15.60171 -15.40845 -15.32939 -15.14497 -14.90006 -14.74401 -14.41772 -14.08113 -13.79491 -13.67191 -13.45336 -13.35979 -13.21703 -13.00060 -12.87070 -12.80557 -12.59698 -12.54233 -12.28516 -12.24696 -12.06274 -12.03969 -11.85704 -11.56130 -11.42991 -10.87118 -10.77666 -10.58653 -10.11176 -9.33739 -9.30567 -8.69074 -7.87868 -5.32815 0.81736 1.46140 1.48554 1.55648 1.59800 1.73041 1.97583 2.24675 2.50649 3.08618 3.27688 3.58531 3.67669 3.74933 3.85629 3.92680 4.04963 4.11069 4.19416 4.29436 4.30645 4.34569 4.35898 4.46550 4.54850 4.63173 4.65351 4.70991 4.76918 4.83100 4.87984 4.93241 4.99077 5.00410 5.03687 5.05789 5.09324 5.20610 5.27770 5.28769 5.36458 5.39646 5.60552 5.66485 5.67037 6.13452 6.23078 6.26266 6.36678 6.52311 7.12458 7.22547 7.83715 8.37894 9.18907 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028340 B = 0.001721 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.753849 B =16267.718455 C =16732.435062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.114 0.886 4 C -0.020 4.020 5 C -0.024 4.024 6 C -0.209 4.209 7 C -0.225 4.225 8 C -0.047 4.047 9 O -0.197 6.197 10 C 0.516 3.484 11 O -0.584 6.584 12 N -0.711 5.711 13 C 0.129 3.871 14 C 0.054 3.946 15 N -0.543 5.543 16 C 0.050 3.950 17 C 0.184 3.816 18 N -0.614 5.614 19 C -0.265 4.265 20 H 0.070 0.930 21 C -0.053 4.053 22 N -0.937 5.937 23 Si 0.970 3.030 24 H -0.278 1.278 25 H -0.295 1.295 26 H -0.274 1.274 27 C 0.141 3.859 28 C 0.058 3.942 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.160 0.840 35 H 0.167 0.833 36 H 0.232 0.768 37 H 0.417 0.583 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.046 0.954 42 H 0.022 0.978 43 H 0.075 0.925 44 H -0.004 1.004 45 H 0.055 0.945 46 H 0.250 0.750 47 H 0.015 0.985 48 H 0.063 0.937 49 H 0.102 0.898 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.276 11.771 26.047 32.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.132 0.868 4 C -0.058 4.058 5 C -0.073 4.073 6 C -0.228 4.228 7 C -0.244 4.244 8 C -0.114 4.114 9 O -0.094 6.094 10 C 0.303 3.697 11 O -0.464 6.464 12 N -0.364 5.364 13 C 0.004 3.996 14 C -0.074 4.074 15 N -0.268 5.268 16 C -0.079 4.079 17 C 0.058 3.942 18 N -0.338 5.338 19 C -0.395 4.395 20 H 0.088 0.912 21 C -0.249 4.249 22 N -0.583 5.583 23 Si 0.798 3.202 24 H -0.204 1.204 25 H -0.221 1.221 26 H -0.199 1.199 27 C 0.015 3.985 28 C -0.071 4.071 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.118 0.882 34 H 0.178 0.822 35 H 0.184 0.816 36 H 0.248 0.752 37 H 0.254 0.746 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.122 0.878 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.093 0.907 44 H 0.014 0.986 45 H 0.073 0.927 46 H 0.059 0.941 47 H 0.033 0.967 48 H 0.082 0.918 49 H 0.120 0.880 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -14.498 10.589 25.992 31.589 hybrid contribution 0.959 0.863 -0.840 1.539 sum -13.539 11.452 25.152 30.775 Atomic orbital electron populations 1.21873 0.90504 1.03351 1.04311 1.21229 0.99447 1.00868 0.90053 0.86845 1.19845 1.02242 0.97033 0.86660 1.22396 0.92787 0.93651 0.98487 1.21876 0.99297 1.03924 0.97736 1.22179 1.00249 0.99769 1.02200 1.24755 0.93497 1.02598 0.90571 1.84028 1.45273 1.43543 1.36552 1.21043 0.79212 0.83999 0.85445 1.90729 1.39792 1.28472 1.87411 1.45758 1.53557 1.32358 1.04746 1.21117 0.98406 0.96495 0.83570 1.22195 1.01577 0.95325 0.88275 1.61762 1.05302 1.56857 1.02897 1.22607 0.88190 0.98054 0.99080 1.20603 0.95925 0.93550 0.84083 1.44396 1.01236 1.80662 1.07519 1.19529 1.01036 1.21273 0.97676 0.91215 1.25828 1.01444 0.96420 1.01162 1.70191 1.20397 1.22551 1.45180 0.85307 0.77926 0.77737 0.79271 1.20425 1.22142 1.19917 1.21168 0.83964 0.96860 0.96480 1.22472 0.99113 0.96010 0.89470 0.92022 0.90257 0.90099 0.90934 0.88228 0.82246 0.81558 0.75186 0.74567 0.93364 0.92150 0.87808 0.93603 0.95927 0.90721 0.98619 0.92673 0.94111 0.96724 0.91832 0.88023 0.95351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.80 71.98 0.63 -0.74 16 2 C -0.09 -1.36 2.71 -11.54 -0.03 -1.39 16 3 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.02 -0.35 4.57 29.85 0.14 -0.21 16 5 C -0.02 -0.39 6.05 24.83 0.15 -0.24 16 6 C -0.21 -2.91 9.41 22.19 0.21 -2.71 16 7 C -0.23 -2.68 10.91 22.19 0.24 -2.44 16 8 C -0.05 -0.57 12.09 66.97 0.81 0.24 16 9 O -0.20 -3.50 10.65 -2.60 -0.03 -3.53 16 10 C 0.52 11.13 7.15 87.65 0.63 11.76 16 11 O -0.58 -18.48 15.92 -3.03 -0.05 -18.53 16 12 N -0.71 -12.80 5.45 -463.07 -2.52 -15.33 16 13 C 0.13 3.15 5.60 86.38 0.48 3.64 16 14 C 0.05 1.23 5.07 86.30 0.44 1.67 16 15 N -0.54 -17.74 4.63 -895.23 -4.15 -21.88 16 16 C 0.05 1.95 5.46 86.39 0.47 2.42 16 17 C 0.18 9.33 5.42 86.35 0.47 9.80 16 18 N -0.61 -31.67 3.04 -698.14 -2.12 -33.79 16 19 C -0.27 -14.81 9.63 84.03 0.81 -14.00 16 20 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 21 C -0.05 -3.04 4.94 84.86 0.42 -2.62 16 22 N -0.94 -56.91 11.15 21.65 0.24 -56.67 16 23 Si 0.97 45.42 29.59 68.60 2.03 47.45 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 25 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 26 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 27 C 0.14 5.85 6.69 86.35 0.58 6.43 16 28 C 0.06 1.87 5.62 86.38 0.49 2.35 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.08 0.70 6.41 -2.39 -0.02 0.69 16 31 H 0.08 0.50 7.56 -2.39 -0.02 0.48 16 32 H 0.07 1.50 7.96 -2.38 -0.02 1.48 16 33 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.23 0.93 8.06 -2.92 -0.02 0.91 16 37 H 0.42 4.41 7.89 -92.71 -0.73 3.68 16 38 H 0.05 1.42 6.40 -2.38 -0.02 1.41 16 39 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.10 1.80 7.97 -2.38 -0.02 1.78 16 41 H 0.05 0.97 8.13 -2.38 -0.02 0.95 16 42 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 2.73 6.16 -2.39 -0.01 2.72 16 44 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 45 H 0.05 3.13 6.12 -2.39 -0.01 3.11 16 46 H 0.25 14.73 8.31 -92.71 -0.77 13.95 16 47 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.06 2.49 7.96 -2.39 -0.02 2.48 16 49 H 0.10 2.50 7.99 -2.39 -0.02 2.48 16 50 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -75.38 397.92 0.53 -74.85 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.20 Total: 13.48 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 6.93 Total: 13.95 kcal Atomic # 7 Polarization: -119.13 SS G_CDS: -8.55 Total: -127.68 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.08 Total: -22.06 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -75.38 0.53 -74.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566653281.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.482 kcal (2) G-P(sol) polarization free energy of solvation -75.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds