Wall clock time and date at job start Tue Mar 31 2020 18:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46873 * 2 1 4 4 C 1.52991 * 109.47452 * 239.99715 * 2 1 3 5 5 C 1.50699 * 109.47262 * 65.00088 * 4 2 1 6 6 C 1.34516 * 125.78845 * 89.71103 * 5 4 2 7 7 C 1.41383 * 106.83978 * 179.89250 * 6 5 4 8 8 C 1.34505 * 106.83938 * 0.37106 * 7 6 5 9 9 O 1.34299 * 108.42426 * 359.77261 * 8 7 6 10 10 C 1.50706 * 109.46878 * 119.99459 * 2 1 3 11 11 O 1.21274 * 119.99635 * 120.00345 * 10 2 1 12 12 N 1.34771 * 120.00099 * 300.00825 * 10 2 1 13 13 C 1.46503 * 120.00070 * 180.02562 * 12 10 2 14 14 C 1.52996 * 109.47305 * 179.97438 * 13 12 10 15 15 N 1.46899 * 109.47462 * 179.97438 * 14 13 12 16 16 C 1.46900 * 111.00163 * 169.99896 * 15 14 13 17 17 C 1.53245 * 109.33848 * 172.74528 * 16 15 14 18 18 N 1.47085 * 108.52064 * 53.82868 * 17 16 15 19 19 C 1.36932 * 120.88213 * 128.79288 * 18 17 16 20 20 H 1.08002 * 119.99977 * 333.51665 * 19 18 17 21 21 C 1.38807 * 119.99998 * 153.50990 * 19 18 17 22 22 N 1.31621 * 119.99922 * 159.47661 * 21 19 18 23 23 Si 1.86799 * 120.00305 * 339.47796 * 21 19 18 24 24 H 1.48496 * 109.47486 * 91.94910 * 23 21 19 25 25 H 1.48498 * 109.47306 * 211.95251 * 23 21 19 26 26 H 1.48508 * 109.46864 * 331.95033 * 23 21 19 27 27 C 1.47080 * 118.23666 * 308.81221 * 18 17 16 28 28 C 1.46896 * 110.99839 * 45.68987 * 15 14 13 29 29 H 1.08994 * 109.47473 * 300.00258 * 1 2 3 30 30 H 1.09000 * 109.46787 * 60.00549 * 1 2 3 31 31 H 1.09001 * 109.46535 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46890 * 185.00283 * 4 2 1 33 33 H 1.08999 * 109.47519 * 304.99769 * 4 2 1 34 34 H 1.08002 * 126.57840 * 0.03185 * 6 5 4 35 35 H 1.07996 * 126.57890 * 180.12990 * 7 6 5 36 36 H 1.08002 * 125.79002 * 179.79223 * 8 7 6 37 37 H 0.97004 * 120.00177 * 359.97438 * 12 10 2 38 38 H 1.08999 * 109.47402 * 59.99143 * 13 12 10 39 39 H 1.09000 * 109.46851 * 299.99234 * 13 12 10 40 40 H 1.08999 * 109.47456 * 59.99341 * 14 13 12 41 41 H 1.09008 * 109.47004 * 299.99588 * 14 13 12 42 42 H 1.09000 * 109.49448 * 52.78501 * 16 15 14 43 43 H 1.08995 * 109.49153 * 292.70371 * 16 15 14 44 44 H 1.08998 * 109.62846 * 173.53869 * 17 16 15 45 45 H 1.08997 * 109.62949 * 293.92586 * 17 16 15 46 46 H 0.97009 * 119.99909 * 179.97438 * 22 21 19 47 47 H 1.08995 * 109.62655 * 170.89395 * 27 18 17 48 48 H 1.08993 * 109.63223 * 291.48019 * 27 18 17 49 49 H 1.09001 * 109.49168 * 67.30395 * 28 15 14 50 50 H 1.08999 * 109.50008 * 307.21904 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6415 0.0570 -2.4765 6 6 2.3633 1.0311 -3.0591 7 6 1.6195 1.4810 -4.1742 8 6 0.4840 0.7605 -4.2014 9 8 0.5027 -0.1004 -3.1709 10 6 2.0323 -0.7103 1.2306 11 8 2.7296 -1.6963 1.1194 12 7 1.7066 -0.2499 2.4546 13 6 2.1953 -0.9401 3.6509 14 6 1.6856 -0.2186 4.9000 15 7 2.1751 -0.9110 6.0996 16 6 1.9086 -0.1210 7.3090 17 6 2.2667 -0.9511 8.5464 18 7 3.6519 -1.4254 8.4060 19 6 4.5644 -1.2370 9.4094 20 1 4.4478 -0.4129 10.0977 21 6 5.6393 -2.1052 9.5420 22 7 6.7107 -1.7293 10.2078 23 14 5.5654 -3.8072 8.7756 24 1 6.1447 -3.7604 7.4092 25 1 6.3411 -4.7598 9.6098 26 1 4.1513 -4.2544 8.6988 27 6 4.0309 -2.1071 7.1591 28 6 3.6034 -1.2315 5.9763 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 3.1264 -0.7995 -1.2053 33 1 1.6055 -1.7198 -1.2950 34 1 3.3272 1.3976 -2.7381 35 1 1.9061 2.2571 -4.8683 36 1 -0.3083 0.8576 -4.9289 37 1 1.1491 0.5390 2.5436 38 1 3.2853 -0.9397 3.6508 39 1 1.8324 -1.9679 3.6511 40 1 0.5956 -0.2186 4.9003 41 1 2.0489 0.8092 4.8997 42 1 0.8525 0.1463 7.3435 43 1 2.5133 0.7857 7.2918 44 1 2.1803 -0.3326 9.4398 45 1 1.5911 -1.8028 8.6240 46 1 7.4617 -2.3362 10.3007 47 1 5.1108 -2.2528 7.1352 48 1 3.5270 -3.0718 7.1013 49 1 4.1845 -0.3094 5.9777 50 1 3.7764 -1.7696 5.0442 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566653282.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:17 Heat of formation + Delta-G solvation = 12.610588 kcal Electronic energy + Delta-G solvation = -28553.445900 eV Core-core repulsion = 24583.372096 eV Total energy + Delta-G solvation = -3970.073803 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.93928 -40.20468 -38.58243 -35.84546 -35.31363 -34.11140 -33.29240 -31.69310 -30.66369 -30.44547 -28.93594 -26.84335 -26.24100 -24.00569 -23.49256 -22.84393 -22.07313 -21.28322 -20.85773 -20.09622 -19.43290 -17.95414 -17.20145 -16.87667 -16.57534 -16.16528 -15.94650 -15.46079 -15.10038 -14.76066 -14.50664 -14.32845 -14.10270 -14.02258 -13.75837 -13.71887 -13.38774 -13.17240 -13.03086 -12.85295 -12.59264 -12.47687 -12.36576 -11.96026 -11.85610 -11.76651 -11.68265 -11.49194 -11.40071 -10.89472 -10.61887 -10.31978 -10.28723 -10.05975 -10.00435 -9.82765 -9.44920 -9.23536 -8.81377 -8.65121 -8.07982 -6.96381 -5.94014 -3.29501 1.35535 2.24776 2.39930 2.57888 2.93614 3.35139 3.51521 3.55856 4.11006 4.28273 4.33527 4.44870 4.55030 4.57628 4.68025 4.75131 4.77366 4.93358 4.95455 5.02569 5.16265 5.27475 5.32630 5.34717 5.37737 5.46802 5.55317 5.60090 5.63135 5.68268 5.70737 5.78533 5.80981 5.85502 5.92217 5.98481 6.06066 6.13984 6.15381 6.24926 6.36313 6.57162 6.64700 6.78779 6.86979 7.21004 7.32277 7.38196 7.94531 7.97446 8.32851 8.93418 9.72532 10.11638 11.21888 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025242 B = 0.001875 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.988947 B =14931.348415 C =15466.856215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.102 0.898 4 C -0.023 4.023 5 C -0.004 4.004 6 C -0.211 4.211 7 C -0.213 4.213 8 C -0.046 4.046 9 O -0.174 6.174 10 C 0.518 3.482 11 O -0.536 6.536 12 N -0.726 5.726 13 C 0.113 3.887 14 C 0.046 3.954 15 N -0.530 5.530 16 C 0.044 3.956 17 C 0.152 3.848 18 N -0.608 5.608 19 C -0.260 4.260 20 H 0.085 0.915 21 C 0.022 3.978 22 N -0.909 5.909 23 Si 0.883 3.117 24 H -0.288 1.288 25 H -0.303 1.303 26 H -0.269 1.269 27 C 0.130 3.870 28 C 0.033 3.967 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.201 0.799 37 H 0.399 0.601 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.035 0.965 42 H 0.067 0.933 43 H 0.034 0.966 44 H 0.066 0.934 45 H 0.031 0.969 46 H 0.262 0.738 47 H 0.075 0.925 48 H 0.034 0.966 49 H 0.037 0.963 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.439 8.126 -26.954 32.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.120 0.880 4 C -0.061 4.061 5 C -0.055 4.055 6 C -0.230 4.230 7 C -0.232 4.232 8 C -0.114 4.114 9 O -0.071 6.071 10 C 0.304 3.696 11 O -0.412 6.412 12 N -0.378 5.378 13 C -0.011 4.011 14 C -0.083 4.083 15 N -0.255 5.255 16 C -0.086 4.086 17 C 0.025 3.975 18 N -0.333 5.333 19 C -0.388 4.388 20 H 0.103 0.897 21 C -0.177 4.177 22 N -0.552 5.552 23 Si 0.714 3.286 24 H -0.215 1.215 25 H -0.231 1.231 26 H -0.194 1.194 27 C 0.004 3.996 28 C -0.096 4.096 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.165 0.835 35 H 0.165 0.835 36 H 0.218 0.782 37 H 0.233 0.767 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.052 0.948 44 H 0.084 0.916 45 H 0.049 0.951 46 H 0.072 0.928 47 H 0.093 0.907 48 H 0.052 0.948 49 H 0.055 0.945 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.233 6.712 -26.780 31.532 hybrid contribution 0.391 0.504 -0.613 0.885 sum -14.843 7.217 -27.393 31.981 Atomic orbital electron populations 1.21814 0.92353 1.03197 1.02847 1.21320 0.98148 1.01060 0.92293 0.87973 1.19959 1.02576 0.97883 0.85645 1.22393 0.85987 1.00246 0.96834 1.21646 1.02576 1.00353 0.98468 1.21846 0.95998 1.04178 1.01176 1.24030 1.01201 0.93548 0.92603 1.84042 1.37593 1.51039 1.34378 1.20447 0.80139 0.84601 0.84435 1.90742 1.37615 1.26132 1.86744 1.45947 1.53917 1.32179 1.05803 1.21592 0.99843 0.97041 0.82601 1.22238 1.00475 0.95723 0.89880 1.61992 1.17863 1.44435 1.01244 1.22650 0.99463 0.95345 0.91105 1.20995 0.86232 0.95945 0.94283 1.44414 1.06543 1.68287 1.14020 1.18920 1.02533 1.09141 1.08225 0.89691 1.25260 0.96313 0.98142 0.97960 1.69839 1.04605 1.35906 1.44900 0.86959 0.77915 0.86296 0.77473 1.21549 1.23150 1.19429 1.21442 0.99129 0.94063 0.84991 1.22822 0.86942 0.99806 1.00019 0.91835 0.91259 0.91690 0.87773 0.89183 0.83458 0.83534 0.78217 0.76658 0.90704 0.90348 0.90505 0.94653 0.91480 0.94761 0.91591 0.95129 0.92775 0.90685 0.94837 0.94498 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.90 37.16 0.33 -0.57 16 2 C -0.11 -0.79 2.71 -91.77 -0.25 -1.04 16 3 H 0.10 0.62 8.14 -51.92 -0.42 0.19 16 4 C -0.02 -0.19 4.57 -27.89 -0.13 -0.32 16 5 C 0.00 -0.04 5.74 -35.62 -0.20 -0.24 16 6 C -0.21 -1.68 10.81 -39.70 -0.43 -2.11 16 7 C -0.21 -1.49 10.91 -39.71 -0.43 -1.92 16 8 C -0.05 -0.30 12.09 29.41 0.36 0.05 16 9 O -0.17 -1.50 10.07 5.73 0.06 -1.44 16 10 C 0.52 5.45 7.15 -10.99 -0.08 5.37 16 11 O -0.54 -7.90 15.92 5.56 0.09 -7.81 16 12 N -0.73 -6.69 5.45 -60.30 -0.33 -7.02 16 13 C 0.11 1.33 4.92 -4.04 -0.02 1.31 16 14 C 0.05 0.53 5.38 -3.83 -0.02 0.51 16 15 N -0.53 -8.40 4.78 -234.32 -1.12 -9.52 16 16 C 0.04 0.70 5.58 -3.70 -0.02 0.68 16 17 C 0.15 2.98 6.69 -3.60 -0.02 2.96 16 18 N -0.61 -14.63 2.82 -172.01 -0.48 -15.12 16 19 C -0.26 -7.32 10.08 -15.06 -0.15 -7.47 16 20 H 0.09 2.53 8.05 -52.49 -0.42 2.11 16 21 C 0.02 0.64 5.24 -17.43 -0.09 0.55 16 22 N -0.91 -28.07 13.97 55.49 0.78 -27.29 16 23 Si 0.88 22.76 24.31 -169.99 -4.13 18.63 16 24 H -0.29 -7.16 6.58 56.52 0.37 -6.78 16 25 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 26 H -0.27 -6.88 6.61 56.52 0.37 -6.51 16 27 C 0.13 2.89 4.35 -3.60 -0.02 2.88 16 28 C 0.03 0.60 5.04 -3.70 -0.02 0.58 16 29 H 0.06 0.30 7.56 -51.93 -0.39 -0.09 16 30 H 0.07 0.44 6.91 -51.93 -0.36 0.08 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.89 7.96 -51.93 -0.41 0.47 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.20 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.40 2.50 7.89 -40.82 -0.32 2.18 16 38 H 0.07 1.02 6.18 -51.93 -0.32 0.70 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.04 0.40 8.08 -51.92 -0.42 -0.02 16 42 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 1.26 7.95 -51.93 -0.41 0.85 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 47 H 0.08 1.82 4.60 -51.93 -0.24 1.58 16 48 H 0.03 0.76 6.94 -51.93 -0.36 0.40 16 49 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.07 1.20 5.73 -51.93 -0.30 0.90 16 LS Contribution 391.37 15.07 5.90 5.90 Total: -1.00 -34.37 391.37 -8.67 -43.04 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -8.22 Total: -0.61 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -1.20 Total: 1.23 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -1.16 Total: -58.94 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.15 Total: -9.25 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.13 Total: 18.63 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.37 -8.67 -43.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566653282.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.650 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds