Wall clock time and date at job start Tue Mar 31 2020 18:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46873 * 2 1 4 4 C 1.52991 * 109.47452 * 239.99715 * 2 1 3 5 5 C 1.50699 * 109.47262 * 65.00088 * 4 2 1 6 6 C 1.34516 * 125.78845 * 89.71103 * 5 4 2 7 7 C 1.41383 * 106.83978 * 179.89250 * 6 5 4 8 8 C 1.34505 * 106.83938 * 0.37106 * 7 6 5 9 9 O 1.34299 * 108.42426 * 359.77261 * 8 7 6 10 10 C 1.50706 * 109.46878 * 119.99459 * 2 1 3 11 11 O 1.21274 * 119.99635 * 120.00345 * 10 2 1 12 12 N 1.34771 * 120.00099 * 300.00825 * 10 2 1 13 13 C 1.46503 * 120.00070 * 180.02562 * 12 10 2 14 14 C 1.52996 * 109.47305 * 179.97438 * 13 12 10 15 15 N 1.46899 * 109.47462 * 179.97438 * 14 13 12 16 16 C 1.46900 * 111.00163 * 169.99896 * 15 14 13 17 17 C 1.53245 * 109.33848 * 172.74528 * 16 15 14 18 18 N 1.47085 * 108.52064 * 53.82868 * 17 16 15 19 19 C 1.36932 * 120.88213 * 128.79288 * 18 17 16 20 20 H 1.08002 * 119.99977 * 333.51665 * 19 18 17 21 21 C 1.38807 * 119.99998 * 153.50990 * 19 18 17 22 22 N 1.31621 * 119.99922 * 159.47661 * 21 19 18 23 23 Si 1.86799 * 120.00305 * 339.47796 * 21 19 18 24 24 H 1.48496 * 109.47486 * 91.94910 * 23 21 19 25 25 H 1.48498 * 109.47306 * 211.95251 * 23 21 19 26 26 H 1.48508 * 109.46864 * 331.95033 * 23 21 19 27 27 C 1.47080 * 118.23666 * 308.81221 * 18 17 16 28 28 C 1.46896 * 110.99839 * 45.68987 * 15 14 13 29 29 H 1.08994 * 109.47473 * 300.00258 * 1 2 3 30 30 H 1.09000 * 109.46787 * 60.00549 * 1 2 3 31 31 H 1.09001 * 109.46535 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46890 * 185.00283 * 4 2 1 33 33 H 1.08999 * 109.47519 * 304.99769 * 4 2 1 34 34 H 1.08002 * 126.57840 * 0.03185 * 6 5 4 35 35 H 1.07996 * 126.57890 * 180.12990 * 7 6 5 36 36 H 1.08002 * 125.79002 * 179.79223 * 8 7 6 37 37 H 0.97004 * 120.00177 * 359.97438 * 12 10 2 38 38 H 1.08999 * 109.47402 * 59.99143 * 13 12 10 39 39 H 1.09000 * 109.46851 * 299.99234 * 13 12 10 40 40 H 1.08999 * 109.47456 * 59.99341 * 14 13 12 41 41 H 1.09008 * 109.47004 * 299.99588 * 14 13 12 42 42 H 1.09000 * 109.49448 * 52.78501 * 16 15 14 43 43 H 1.08995 * 109.49153 * 292.70371 * 16 15 14 44 44 H 1.08998 * 109.62846 * 173.53869 * 17 16 15 45 45 H 1.08997 * 109.62949 * 293.92586 * 17 16 15 46 46 H 0.97009 * 119.99909 * 179.97438 * 22 21 19 47 47 H 1.08995 * 109.62655 * 170.89395 * 27 18 17 48 48 H 1.08993 * 109.63223 * 291.48019 * 27 18 17 49 49 H 1.09001 * 109.49168 * 67.30395 * 28 15 14 50 50 H 1.08999 * 109.50008 * 307.21904 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6415 0.0570 -2.4765 6 6 2.3633 1.0311 -3.0591 7 6 1.6195 1.4810 -4.1742 8 6 0.4840 0.7605 -4.2014 9 8 0.5027 -0.1004 -3.1709 10 6 2.0323 -0.7103 1.2306 11 8 2.7296 -1.6963 1.1194 12 7 1.7066 -0.2499 2.4546 13 6 2.1953 -0.9401 3.6509 14 6 1.6856 -0.2186 4.9000 15 7 2.1751 -0.9110 6.0996 16 6 1.9086 -0.1210 7.3090 17 6 2.2667 -0.9511 8.5464 18 7 3.6519 -1.4254 8.4060 19 6 4.5644 -1.2370 9.4094 20 1 4.4478 -0.4129 10.0977 21 6 5.6393 -2.1052 9.5420 22 7 6.7107 -1.7293 10.2078 23 14 5.5654 -3.8072 8.7756 24 1 6.1447 -3.7604 7.4092 25 1 6.3411 -4.7598 9.6098 26 1 4.1513 -4.2544 8.6988 27 6 4.0309 -2.1071 7.1591 28 6 3.6034 -1.2315 5.9763 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 3.1264 -0.7995 -1.2053 33 1 1.6055 -1.7198 -1.2950 34 1 3.3272 1.3976 -2.7381 35 1 1.9061 2.2571 -4.8683 36 1 -0.3083 0.8576 -4.9289 37 1 1.1491 0.5390 2.5436 38 1 3.2853 -0.9397 3.6508 39 1 1.8324 -1.9679 3.6511 40 1 0.5956 -0.2186 4.9003 41 1 2.0489 0.8092 4.8997 42 1 0.8525 0.1463 7.3435 43 1 2.5133 0.7857 7.2918 44 1 2.1803 -0.3326 9.4398 45 1 1.5911 -1.8028 8.6240 46 1 7.4617 -2.3362 10.3007 47 1 5.1108 -2.2528 7.1352 48 1 3.5270 -3.0718 7.1013 49 1 4.1845 -0.3094 5.9777 50 1 3.7764 -1.7696 5.0442 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566653282.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:16 Heat of formation + Delta-G solvation = -12.579688 kcal Electronic energy + Delta-G solvation = -28554.538232 eV Core-core repulsion = 24583.372096 eV Total energy + Delta-G solvation = -3971.166136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.48515 -41.07042 -39.96512 -37.09718 -36.07996 -35.45265 -33.85320 -33.61730 -32.10516 -31.27666 -30.11904 -27.74008 -27.38238 -25.18135 -24.93848 -24.22940 -22.62210 -22.46963 -21.53145 -21.08934 -20.72551 -18.83725 -18.55617 -17.80986 -17.70341 -17.12248 -16.84745 -16.69004 -16.09542 -15.92832 -15.83241 -15.69087 -15.56671 -15.23768 -14.88824 -14.59132 -14.36494 -14.22630 -14.00842 -13.77381 -13.70229 -13.48571 -13.42757 -13.21493 -12.97875 -12.96139 -12.76457 -12.40987 -12.29149 -12.22584 -12.12313 -12.08113 -11.79304 -11.59262 -11.44095 -10.93896 -10.78379 -10.74335 -10.13370 -9.39669 -9.35283 -8.91454 -8.18801 -5.49709 0.81093 1.28574 1.39727 1.49033 1.58244 1.71483 1.95356 2.22891 2.39608 2.95642 3.06836 3.35261 3.56667 3.75065 3.78470 3.86748 4.04769 4.06372 4.13861 4.17585 4.21259 4.27311 4.35420 4.38334 4.44509 4.54301 4.55973 4.58894 4.70158 4.76427 4.80351 4.83876 4.88677 4.93275 4.97719 4.99794 5.00099 5.00502 5.09427 5.22061 5.28946 5.29650 5.37330 5.63905 5.81115 6.02524 6.06595 6.17149 6.24882 6.50276 6.88074 7.20633 7.59448 8.02315 9.00918 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025242 B = 0.001875 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.988947 B =14931.348415 C =15466.856215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 H 0.122 0.878 4 C -0.020 4.020 5 C -0.019 4.019 6 C -0.220 4.220 7 C -0.227 4.227 8 C -0.044 4.044 9 O -0.189 6.189 10 C 0.517 3.483 11 O -0.583 6.583 12 N -0.712 5.712 13 C 0.119 3.881 14 C 0.054 3.946 15 N -0.537 5.537 16 C 0.054 3.946 17 C 0.143 3.857 18 N -0.623 5.623 19 C -0.247 4.247 20 H 0.056 0.944 21 C -0.034 4.034 22 N -0.956 5.956 23 Si 0.944 3.056 24 H -0.276 1.276 25 H -0.309 1.309 26 H -0.265 1.265 27 C 0.124 3.876 28 C 0.047 3.953 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.234 0.766 37 H 0.418 0.582 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.106 0.894 41 H 0.049 0.951 42 H 0.108 0.892 43 H 0.026 0.974 44 H 0.064 0.936 45 H 0.037 0.963 46 H 0.261 0.739 47 H 0.051 0.949 48 H 0.033 0.967 49 H 0.026 0.974 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.216 9.228 -29.342 35.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 H 0.140 0.860 4 C -0.058 4.058 5 C -0.069 4.069 6 C -0.240 4.240 7 C -0.246 4.246 8 C -0.111 4.111 9 O -0.086 6.086 10 C 0.304 3.696 11 O -0.463 6.463 12 N -0.365 5.365 13 C -0.005 4.005 14 C -0.074 4.074 15 N -0.263 5.263 16 C -0.074 4.074 17 C 0.019 3.981 18 N -0.349 5.349 19 C -0.377 4.377 20 H 0.074 0.926 21 C -0.229 4.229 22 N -0.602 5.602 23 Si 0.774 3.226 24 H -0.203 1.203 25 H -0.238 1.238 26 H -0.189 1.189 27 C -0.001 4.001 28 C -0.083 4.083 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.172 0.828 35 H 0.182 0.818 36 H 0.250 0.750 37 H 0.255 0.745 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.124 0.876 41 H 0.067 0.933 42 H 0.126 0.874 43 H 0.044 0.956 44 H 0.082 0.918 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.051 0.949 49 H 0.044 0.956 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.083 7.856 -29.200 35.232 hybrid contribution 1.171 0.253 0.089 1.201 sum -16.912 8.109 -29.111 34.630 Atomic orbital electron populations 1.21793 0.91078 1.02917 1.03920 1.21279 0.98973 1.01286 0.90115 0.86014 1.19862 1.02004 0.97494 0.86436 1.22346 0.86456 1.00811 0.97242 1.21902 1.02936 1.00279 0.98835 1.22152 0.96170 1.04953 1.01355 1.24750 1.01876 0.92338 0.92136 1.84034 1.37711 1.51761 1.35046 1.20990 0.79210 0.83964 0.85408 1.90726 1.39815 1.28348 1.87404 1.45764 1.53588 1.32401 1.04704 1.21343 0.98668 0.96753 0.83742 1.22263 1.01937 0.95645 0.87554 1.61935 1.15939 1.45605 1.02823 1.22508 1.01617 0.93863 0.89451 1.21223 0.83826 0.96593 0.96497 1.44566 1.07851 1.68686 1.13751 1.18896 1.02935 1.07677 1.08179 0.92613 1.25849 0.96208 1.01396 0.99471 1.69958 1.05527 1.37036 1.47707 0.85962 0.77868 0.81757 0.77058 1.20291 1.23827 1.18918 1.21437 0.97773 0.94904 0.85994 1.22550 0.88567 0.98626 0.98538 0.89794 0.91096 0.92666 0.88647 0.90445 0.82775 0.81807 0.74969 0.74501 0.92703 0.91798 0.87592 0.93322 0.87433 0.95600 0.91763 0.94519 0.92958 0.93136 0.94912 0.95579 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.90 71.98 0.64 -0.76 16 2 C -0.10 -1.24 2.71 -11.54 -0.03 -1.27 16 3 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 4 C -0.02 -0.33 4.57 29.85 0.14 -0.19 16 5 C -0.02 -0.30 5.74 24.83 0.14 -0.16 16 6 C -0.22 -3.23 10.81 22.19 0.24 -2.99 16 7 C -0.23 -2.75 10.91 22.19 0.24 -2.51 16 8 C -0.04 -0.48 12.09 66.97 0.81 0.33 16 9 O -0.19 -2.98 10.07 -2.41 -0.02 -3.01 16 10 C 0.52 10.13 7.15 87.66 0.63 10.75 16 11 O -0.58 -17.13 15.92 -3.01 -0.05 -17.17 16 12 N -0.71 -11.17 5.45 -463.07 -2.52 -13.70 16 13 C 0.12 2.54 4.92 86.38 0.43 2.96 16 14 C 0.05 1.05 5.38 86.30 0.46 1.51 16 15 N -0.54 -15.40 4.78 -895.24 -4.28 -19.67 16 16 C 0.05 1.58 5.58 86.39 0.48 2.07 16 17 C 0.14 5.42 6.69 86.35 0.58 6.00 16 18 N -0.62 -29.81 2.82 -698.12 -1.97 -31.78 16 19 C -0.25 -14.22 10.08 84.03 0.85 -13.37 16 20 H 0.06 3.46 8.05 -2.91 -0.02 3.44 16 21 C -0.03 -2.05 5.24 84.86 0.44 -1.61 16 22 N -0.96 -60.87 13.97 21.65 0.30 -60.57 16 23 Si 0.94 48.04 24.31 68.60 1.67 49.71 16 24 H -0.28 -13.37 6.58 99.48 0.65 -12.71 16 25 H -0.31 -15.91 7.11 99.48 0.71 -15.20 16 26 H -0.26 -13.07 6.61 99.48 0.66 -12.41 16 27 C 0.12 5.46 4.35 86.35 0.38 5.83 16 28 C 0.05 1.62 5.04 86.39 0.44 2.05 16 29 H 0.08 0.49 7.56 -2.39 -0.02 0.48 16 30 H 0.07 0.73 6.91 -2.39 -0.02 0.72 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.10 1.66 7.96 -2.38 -0.02 1.64 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.23 0.64 8.06 -2.91 -0.02 0.62 16 37 H 0.42 3.55 7.89 -92.71 -0.73 2.82 16 38 H 0.05 1.41 6.18 -2.39 -0.01 1.39 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.05 0.88 8.08 -2.38 -0.02 0.86 16 42 H 0.11 2.32 8.11 -2.39 -0.02 2.30 16 43 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 2.41 7.95 -2.39 -0.02 2.39 16 45 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.26 15.85 8.31 -92.70 -0.77 15.08 16 47 H 0.05 2.45 4.60 -2.39 -0.01 2.44 16 48 H 0.03 1.45 6.94 -2.39 -0.02 1.43 16 49 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.09 2.81 5.73 -2.39 -0.01 2.80 16 Total: -1.00 -77.11 391.37 0.09 -77.02 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.10 Total: 10.53 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 6.86 Total: 8.64 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -8.47 Total: -125.72 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.07 Total: -20.18 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 1.67 Total: 49.71 kcal Total: -77.11 0.09 -77.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566653282.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.438 kcal (2) G-P(sol) polarization free energy of solvation -77.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds