Wall clock time and date at job start Tue Mar 31 2020 19:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46959 * 2 1 4 4 C 1.52998 * 109.46952 * 119.99530 * 2 1 3 5 5 N 1.46501 * 109.47089 * 65.00255 * 4 2 1 6 6 C 1.35429 * 119.47721 * 90.00016 * 5 4 2 7 7 C 1.35751 * 121.23766 * 180.02562 * 6 5 4 8 8 C 1.39476 * 120.13132 * 359.97400 * 7 6 5 9 9 C 1.39343 * 118.95614 * 0.02562 * 8 7 6 10 10 C 1.47083 * 120.58649 * 179.97438 * 9 8 7 11 11 O 1.21642 * 119.99638 * 5.79607 * 10 9 8 12 12 N 1.34777 * 119.99785 * 185.79818 * 10 9 8 13 13 C 1.46501 * 119.99468 * 174.86364 * 12 10 9 14 14 C 1.53009 * 109.46594 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.46714 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.47685 * 55.00268 * 15 14 13 17 17 C 1.53002 * 109.47098 * 175.00220 * 15 14 13 18 18 N 1.46499 * 109.46984 * 294.99641 * 15 14 13 19 19 C 1.36942 * 119.99868 * 155.00412 * 18 15 14 20 20 H 1.08006 * 119.99908 * 359.97438 * 19 18 15 21 21 C 1.38816 * 119.99826 * 180.02562 * 19 18 15 22 22 N 1.31612 * 120.00210 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99635 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47140 * 89.99690 * 23 21 19 25 25 H 1.48505 * 109.47073 * 209.99844 * 23 21 19 26 26 H 1.48503 * 109.47220 * 329.99685 * 23 21 19 27 27 C 1.34657 * 119.46910 * 270.26396 * 5 4 2 28 28 O 1.21889 * 120.10425 * 0.02562 * 27 5 4 29 29 H 1.08998 * 109.46994 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47060 * 300.00492 * 1 2 3 31 31 H 1.09005 * 109.47166 * 60.00508 * 1 2 3 32 32 H 1.08997 * 109.47060 * 239.99507 * 2 1 3 33 33 H 1.09002 * 109.46917 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46780 * 299.99183 * 3 2 1 35 35 H 1.08997 * 109.47637 * 59.99861 * 3 2 1 36 36 H 1.09001 * 109.47244 * 305.00505 * 4 2 1 37 37 H 1.09000 * 109.47445 * 185.00068 * 4 2 1 38 38 H 1.08009 * 119.37969 * 359.97438 * 6 5 4 39 39 H 1.08003 * 119.94043 * 179.97438 * 7 6 5 40 40 H 1.07994 * 120.52538 * 180.02562 * 8 7 6 41 41 H 0.96996 * 120.00071 * 354.86231 * 12 10 9 42 42 H 1.08998 * 109.47303 * 299.99453 * 13 12 10 43 43 H 1.09000 * 109.47033 * 60.00425 * 13 12 10 44 44 H 1.08998 * 109.46909 * 299.99768 * 14 13 12 45 45 H 1.08997 * 109.47263 * 60.00038 * 14 13 12 46 46 H 1.08999 * 109.47528 * 59.99346 * 17 15 14 47 47 H 1.09000 * 109.47529 * 179.97438 * 17 15 14 48 48 H 1.09000 * 109.46849 * 299.99560 * 17 15 14 49 49 H 0.96993 * 120.00731 * 335.00441 * 18 15 14 50 50 H 0.97001 * 119.99889 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6524 -2.1327 1.1907 6 6 2.4836 -3.0283 0.6065 7 6 2.1601 -4.3446 0.5321 8 6 0.9532 -4.8000 1.0626 9 6 0.0929 -3.8844 1.6652 10 6 -1.1890 -4.3254 2.2358 11 8 -1.4597 -5.5106 2.2792 12 7 -2.0636 -3.4165 2.7105 13 6 -3.3853 -3.8448 3.1749 14 6 -4.1747 -2.6271 3.6599 15 6 -5.5549 -3.0745 4.1455 16 1 -5.4398 -3.8483 4.9046 17 6 -6.2970 -1.8784 4.7450 18 7 -6.3205 -3.6081 3.0163 19 6 -7.3270 -4.5103 3.2368 20 1 -7.5559 -4.8287 4.2431 21 6 -8.0521 -5.0164 2.1667 22 7 -7.7728 -4.6288 0.9404 23 14 -9.4245 -6.2475 2.4675 24 1 -10.7043 -5.5223 2.6708 25 1 -9.5472 -7.1486 1.2934 26 1 -9.1129 -7.0505 3.6772 27 6 0.4730 -2.5182 1.7138 28 8 -0.2642 -1.6966 2.2308 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6053 -0.2616 2.1370 37 1 3.1263 -0.6443 1.2953 38 1 3.4211 -2.6887 0.1913 39 1 2.8384 -5.0406 0.0611 40 1 0.6896 -5.8459 1.0072 41 1 -1.8179 -2.4787 2.7446 42 1 -3.9213 -4.3227 2.3550 43 1 -3.2702 -4.5530 3.9955 44 1 -3.6386 -2.1496 4.4800 45 1 -4.2899 -1.9185 2.8397 46 1 -6.4121 -1.1045 3.9861 47 1 -7.2805 -2.1969 5.0906 48 1 -5.7274 -1.4813 5.5852 49 1 -6.1148 -3.3226 2.1125 50 1 -8.2793 -4.9827 0.1926 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567231734.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:24 Heat of formation + Delta-G solvation = -37.905247 kcal Electronic energy + Delta-G solvation = -29313.682518 eV Core-core repulsion = 25341.418183 eV Total energy + Delta-G solvation = -3972.264334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.95421 -39.12315 -37.42487 -36.75553 -36.31868 -34.00979 -33.66671 -32.09110 -30.50896 -29.06259 -27.95083 -27.56016 -27.41598 -25.13252 -23.65644 -23.04838 -22.30381 -21.01484 -20.42651 -19.64587 -18.02988 -17.85103 -17.22841 -17.01774 -16.46150 -15.97765 -15.40417 -15.11876 -15.08444 -14.77744 -14.54095 -14.03014 -13.87132 -13.69371 -13.38281 -13.34219 -12.87670 -12.77806 -12.72508 -12.69998 -12.52131 -12.38301 -12.29752 -11.88187 -11.51660 -11.41166 -11.35425 -11.23017 -10.89968 -10.80705 -10.62454 -10.50191 -10.27770 -10.16637 -10.14604 -9.90561 -9.57988 -9.51351 -8.80318 -8.53702 -8.26640 -6.83343 -5.64514 -2.92502 0.17904 1.50493 2.12489 2.79534 3.52077 3.57038 3.58998 3.62868 3.75517 4.06473 4.07181 4.27541 4.44115 4.49758 4.68210 4.70219 4.78864 4.89581 5.00032 5.02128 5.15974 5.32677 5.42936 5.49836 5.53000 5.55341 5.59544 5.63591 5.69407 5.70804 5.82640 5.84218 5.95188 6.04324 6.06642 6.13409 6.27289 6.33845 6.51993 6.56763 6.58079 6.68197 6.87462 7.00099 7.03673 7.19930 7.58953 7.81869 8.11896 8.54058 8.71744 9.65122 10.23396 10.58350 11.58360 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014513 B = 0.002559 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.838250 B =10940.776477 C =11719.383490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.145 4.145 4 C 0.090 3.910 5 N -0.489 5.489 6 C 0.154 3.846 7 C -0.238 4.238 8 C 0.053 3.947 9 C -0.267 4.267 10 C 0.568 3.432 11 O -0.551 6.551 12 N -0.714 5.714 13 C 0.121 3.879 14 C -0.130 4.130 15 C 0.174 3.826 16 H 0.049 0.951 17 C -0.163 4.163 18 N -0.723 5.723 19 C -0.234 4.234 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.905 3.095 24 H -0.292 1.292 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.531 3.469 28 O -0.535 6.535 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.166 0.834 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.411 0.589 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.045 0.955 47 H 0.053 0.947 48 H 0.035 0.965 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.725 10.498 -2.454 31.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.129 4.129 3 C -0.202 4.202 4 C -0.031 4.031 5 N -0.197 5.197 6 C 0.024 3.976 7 C -0.261 4.261 8 C 0.030 3.970 9 C -0.274 4.274 10 C 0.354 3.646 11 O -0.431 6.431 12 N -0.374 5.374 13 C -0.002 4.002 14 C -0.169 4.169 15 C 0.064 3.936 16 H 0.067 0.933 17 C -0.223 4.223 18 N -0.365 5.365 19 C -0.365 4.365 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.582 5.582 23 Si 0.736 3.264 24 H -0.219 1.219 25 H -0.219 1.219 26 H -0.208 1.208 27 C 0.333 3.667 28 O -0.417 6.417 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.183 0.817 39 H 0.171 0.829 40 H 0.168 0.832 41 H 0.256 0.744 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.054 0.946 49 H 0.217 0.783 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 28.908 10.186 -1.997 30.715 hybrid contribution -0.538 -0.232 -0.348 0.681 sum 28.369 9.954 -2.344 30.156 Atomic orbital electron populations 1.21889 0.93464 1.02623 1.02387 1.21507 0.97792 0.96744 0.96814 1.21772 1.00744 0.94882 1.02848 1.22276 1.00946 0.78408 1.01470 1.45465 1.17500 1.09938 1.46768 1.22163 0.94578 0.90031 0.90828 1.20693 1.00181 0.94800 1.10394 1.22062 0.89643 1.00732 0.84579 1.21194 1.00246 0.92816 1.13143 1.17403 0.82915 0.85874 0.78361 1.90801 1.77651 1.16519 1.58109 1.46610 1.15369 1.12596 1.62804 1.21417 0.81330 0.97083 1.00360 1.22021 0.96959 0.97121 1.00773 1.20162 0.88434 0.93761 0.91246 0.93325 1.22417 1.00917 0.99689 0.99262 1.42461 1.38957 1.51164 1.03940 1.19242 1.08229 1.16155 0.92896 0.91234 1.24719 1.00192 1.00849 0.95316 1.69662 1.43299 1.47612 0.97637 0.86216 0.82278 0.81025 0.76856 1.21920 1.21879 1.20800 1.16994 0.80582 0.89347 0.79783 1.90639 1.50097 1.53866 1.47089 0.92650 0.91444 0.92703 0.90860 0.92498 0.91851 0.92021 0.87611 0.88907 0.81704 0.82910 0.83218 0.74371 0.90016 0.92047 0.92033 0.91722 0.93557 0.92800 0.94587 0.78289 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 7.91 37.16 0.29 -1.05 16 2 C -0.11 -0.64 3.13 -90.62 -0.28 -0.92 16 3 C -0.14 -0.64 9.19 37.16 0.34 -0.30 16 4 C 0.09 0.50 4.92 -4.04 -0.02 0.48 16 5 N -0.49 -3.76 2.47 -119.34 -0.30 -4.06 16 6 C 0.15 0.75 10.25 -16.85 -0.17 0.58 16 7 C -0.24 -1.42 9.99 -40.01 -0.40 -1.82 16 8 C 0.05 0.54 9.70 -38.71 -0.38 0.17 16 9 C -0.27 -3.67 5.92 -104.50 -0.62 -4.29 16 10 C 0.57 10.36 7.73 -12.67 -0.10 10.27 16 11 O -0.55 -11.82 16.41 5.24 0.09 -11.73 16 12 N -0.71 -12.88 5.47 -61.49 -0.34 -13.22 16 13 C 0.12 2.40 5.57 -4.04 -0.02 2.38 16 14 C -0.13 -2.37 4.87 -26.73 -0.13 -2.50 16 15 C 0.17 3.67 2.89 -67.93 -0.20 3.47 16 16 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 17 C -0.16 -3.10 9.49 37.16 0.35 -2.75 16 18 N -0.72 -18.88 4.57 -53.42 -0.24 -19.12 16 19 C -0.23 -6.74 9.93 -15.06 -0.15 -6.89 16 20 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 22 N -0.93 -29.30 13.06 55.49 0.72 -28.58 16 23 Si 0.90 23.37 29.55 -169.99 -5.02 18.35 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 26 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 27 C 0.53 6.44 6.00 -14.91 -0.09 6.35 16 28 O -0.54 -7.57 11.38 5.02 0.06 -7.51 16 29 H 0.05 0.65 6.03 -51.93 -0.31 0.33 16 30 H 0.07 0.69 7.95 -51.93 -0.41 0.27 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.11 0.75 7.39 -51.93 -0.38 0.36 16 37 H 0.09 0.21 8.00 -51.93 -0.42 -0.20 16 38 H 0.17 0.08 8.02 -52.48 -0.42 -0.34 16 39 H 0.15 0.44 8.06 -52.48 -0.42 0.02 16 40 H 0.15 1.53 7.70 -52.49 -0.40 1.13 16 41 H 0.41 6.95 5.07 -40.82 -0.21 6.75 16 42 H 0.08 1.91 7.75 -51.93 -0.40 1.51 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.38 10.68 7.80 -40.82 -0.32 10.36 16 50 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 404.79 15.07 6.10 6.10 Total: -1.00 -36.56 404.79 -8.91 -45.47 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -8.32 Total: 11.67 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -1.66 Total: 2.63 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -0.15 Total: -64.97 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.14 Total: -19.24 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.56 -8.91 -45.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567231734.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.569 kcal (2) G-P(sol) polarization free energy of solvation -36.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds