Wall clock time and date at job start Tue Mar 31 2020 19:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46959 * 2 1 4 4 C 1.52998 * 109.46952 * 119.99530 * 2 1 3 5 5 N 1.46501 * 109.47089 * 65.00255 * 4 2 1 6 6 C 1.35429 * 119.47721 * 90.00016 * 5 4 2 7 7 C 1.35751 * 121.23766 * 180.02562 * 6 5 4 8 8 C 1.39476 * 120.13132 * 359.97400 * 7 6 5 9 9 C 1.39343 * 118.95614 * 0.02562 * 8 7 6 10 10 C 1.47083 * 120.58649 * 179.97438 * 9 8 7 11 11 O 1.21642 * 119.99638 * 5.79607 * 10 9 8 12 12 N 1.34777 * 119.99785 * 185.79818 * 10 9 8 13 13 C 1.46501 * 119.99468 * 174.86364 * 12 10 9 14 14 C 1.53009 * 109.46594 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.46714 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.47685 * 55.00268 * 15 14 13 17 17 C 1.53002 * 109.47098 * 175.00220 * 15 14 13 18 18 N 1.46499 * 109.46984 * 294.99641 * 15 14 13 19 19 C 1.36942 * 119.99868 * 155.00412 * 18 15 14 20 20 H 1.08006 * 119.99908 * 359.97438 * 19 18 15 21 21 C 1.38816 * 119.99826 * 180.02562 * 19 18 15 22 22 N 1.31612 * 120.00210 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99635 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47140 * 89.99690 * 23 21 19 25 25 H 1.48505 * 109.47073 * 209.99844 * 23 21 19 26 26 H 1.48503 * 109.47220 * 329.99685 * 23 21 19 27 27 C 1.34657 * 119.46910 * 270.26396 * 5 4 2 28 28 O 1.21889 * 120.10425 * 0.02562 * 27 5 4 29 29 H 1.08998 * 109.46994 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47060 * 300.00492 * 1 2 3 31 31 H 1.09005 * 109.47166 * 60.00508 * 1 2 3 32 32 H 1.08997 * 109.47060 * 239.99507 * 2 1 3 33 33 H 1.09002 * 109.46917 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46780 * 299.99183 * 3 2 1 35 35 H 1.08997 * 109.47637 * 59.99861 * 3 2 1 36 36 H 1.09001 * 109.47244 * 305.00505 * 4 2 1 37 37 H 1.09000 * 109.47445 * 185.00068 * 4 2 1 38 38 H 1.08009 * 119.37969 * 359.97438 * 6 5 4 39 39 H 1.08003 * 119.94043 * 179.97438 * 7 6 5 40 40 H 1.07994 * 120.52538 * 180.02562 * 8 7 6 41 41 H 0.96996 * 120.00071 * 354.86231 * 12 10 9 42 42 H 1.08998 * 109.47303 * 299.99453 * 13 12 10 43 43 H 1.09000 * 109.47033 * 60.00425 * 13 12 10 44 44 H 1.08998 * 109.46909 * 299.99768 * 14 13 12 45 45 H 1.08997 * 109.47263 * 60.00038 * 14 13 12 46 46 H 1.08999 * 109.47528 * 59.99346 * 17 15 14 47 47 H 1.09000 * 109.47529 * 179.97438 * 17 15 14 48 48 H 1.09000 * 109.46849 * 299.99560 * 17 15 14 49 49 H 0.96993 * 120.00731 * 335.00441 * 18 15 14 50 50 H 0.97001 * 119.99889 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6524 -2.1327 1.1907 6 6 2.4836 -3.0283 0.6065 7 6 2.1601 -4.3446 0.5321 8 6 0.9532 -4.8000 1.0626 9 6 0.0929 -3.8844 1.6652 10 6 -1.1890 -4.3254 2.2358 11 8 -1.4597 -5.5106 2.2792 12 7 -2.0636 -3.4165 2.7105 13 6 -3.3853 -3.8448 3.1749 14 6 -4.1747 -2.6271 3.6599 15 6 -5.5549 -3.0745 4.1455 16 1 -5.4398 -3.8483 4.9046 17 6 -6.2970 -1.8784 4.7450 18 7 -6.3205 -3.6081 3.0163 19 6 -7.3270 -4.5103 3.2368 20 1 -7.5559 -4.8287 4.2431 21 6 -8.0521 -5.0164 2.1667 22 7 -7.7728 -4.6288 0.9404 23 14 -9.4245 -6.2475 2.4675 24 1 -10.7043 -5.5223 2.6708 25 1 -9.5472 -7.1486 1.2934 26 1 -9.1129 -7.0505 3.6772 27 6 0.4730 -2.5182 1.7138 28 8 -0.2642 -1.6966 2.2308 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6053 -0.2616 2.1370 37 1 3.1263 -0.6443 1.2953 38 1 3.4211 -2.6887 0.1913 39 1 2.8384 -5.0406 0.0611 40 1 0.6896 -5.8459 1.0072 41 1 -1.8179 -2.4787 2.7446 42 1 -3.9213 -4.3227 2.3550 43 1 -3.2702 -4.5530 3.9955 44 1 -3.6386 -2.1496 4.4800 45 1 -4.2899 -1.9185 2.8397 46 1 -6.4121 -1.1045 3.9861 47 1 -7.2805 -2.1969 5.0906 48 1 -5.7274 -1.4813 5.5852 49 1 -6.1148 -3.3226 2.1125 50 1 -8.2793 -4.9827 0.1926 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567231734.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:23 Heat of formation + Delta-G solvation = -63.533434 kcal Electronic energy + Delta-G solvation = -29314.793839 eV Core-core repulsion = 25341.418183 eV Total energy + Delta-G solvation = -3973.375656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.70375 -40.45235 -38.30924 -38.13664 -37.24891 -35.70049 -34.38617 -34.08054 -31.48880 -30.81296 -29.54151 -28.19449 -27.88492 -26.23256 -25.63148 -23.82207 -23.68772 -22.14571 -21.46771 -21.04713 -19.37134 -18.88672 -18.61795 -17.95043 -17.23768 -16.98322 -16.77413 -16.62730 -16.27792 -15.69936 -15.59428 -15.46425 -15.35518 -15.13332 -14.66184 -14.35427 -14.16061 -13.99104 -13.63814 -13.55214 -13.42802 -13.31428 -13.18334 -13.01606 -12.88330 -12.82111 -12.66857 -12.35014 -12.25962 -12.16596 -12.09334 -11.91508 -11.72373 -11.68254 -11.63291 -11.19780 -11.00583 -10.95704 -10.89921 -10.04808 -9.06691 -9.00184 -7.93069 -5.21056 -0.55837 0.80886 1.44236 1.47169 1.48945 1.55204 1.72867 2.37941 2.56219 2.72437 3.40313 3.48127 3.73234 3.79016 3.85849 3.87350 3.89578 3.95139 3.98370 4.14985 4.17406 4.24571 4.32866 4.45609 4.55470 4.61939 4.68052 4.71522 4.77945 4.83066 4.86172 4.94590 4.96036 4.98289 5.06181 5.06827 5.14688 5.18711 5.25371 5.33573 5.37423 5.41891 5.49878 5.51696 5.56605 5.58449 5.91509 6.28959 6.59710 6.89251 7.34184 7.35157 8.10622 8.33952 9.30892 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014513 B = 0.002559 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.838250 B =10940.776477 C =11719.383490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C -0.141 4.141 4 C 0.087 3.913 5 N -0.483 5.483 6 C 0.191 3.809 7 C -0.243 4.243 8 C 0.070 3.930 9 C -0.329 4.329 10 C 0.559 3.441 11 O -0.602 6.602 12 N -0.713 5.713 13 C 0.132 3.868 14 C -0.113 4.113 15 C 0.167 3.833 16 H 0.045 0.955 17 C -0.152 4.152 18 N -0.735 5.735 19 C -0.234 4.234 20 H 0.076 0.924 21 C -0.081 4.081 22 N -0.972 5.972 23 Si 0.972 3.028 24 H -0.285 1.285 25 H -0.297 1.297 26 H -0.271 1.271 27 C 0.526 3.474 28 O -0.570 6.570 29 H 0.025 0.975 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.146 0.854 38 H 0.233 0.767 39 H 0.196 0.804 40 H 0.140 0.860 41 H 0.417 0.583 42 H 0.036 0.964 43 H 0.050 0.950 44 H 0.095 0.905 45 H 0.062 0.938 46 H 0.043 0.957 47 H 0.038 0.962 48 H 0.074 0.926 49 H 0.370 0.630 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.019 11.857 -2.674 36.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.198 4.198 4 C -0.033 4.033 5 N -0.188 5.188 6 C 0.060 3.940 7 C -0.265 4.265 8 C 0.046 3.954 9 C -0.336 4.336 10 C 0.349 3.651 11 O -0.486 6.486 12 N -0.373 5.373 13 C 0.008 3.992 14 C -0.151 4.151 15 C 0.059 3.941 16 H 0.063 0.937 17 C -0.211 4.211 18 N -0.376 5.376 19 C -0.366 4.366 20 H 0.094 0.906 21 C -0.273 4.273 22 N -0.623 5.623 23 Si 0.801 3.199 24 H -0.212 1.212 25 H -0.224 1.224 26 H -0.196 1.196 27 C 0.330 3.670 28 O -0.455 6.455 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.163 0.837 38 H 0.249 0.751 39 H 0.213 0.787 40 H 0.157 0.843 41 H 0.264 0.736 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.113 0.887 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.093 0.907 49 H 0.202 0.798 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 33.248 11.601 -2.174 35.281 hybrid contribution -1.635 -0.613 -0.329 1.777 sum 31.613 10.988 -2.503 33.562 Atomic orbital electron populations 1.21873 0.96809 1.00309 1.01418 1.21485 0.94737 0.98191 0.97698 1.21744 1.02374 0.93429 1.02303 1.22557 1.03740 0.76562 1.00452 1.45562 1.16230 1.11620 1.45381 1.23281 0.95103 0.89025 0.86548 1.21143 0.98754 0.96366 1.10198 1.22307 0.90550 0.99857 0.82697 1.20809 0.99699 0.94885 1.18212 1.18224 0.84386 0.85174 0.77362 1.90737 1.79184 1.18336 1.60330 1.46608 1.14596 1.13051 1.63069 1.21090 0.82413 0.97476 0.98206 1.21869 0.95433 0.96175 1.01670 1.20423 0.89441 0.94494 0.89787 0.93718 1.22246 1.00284 0.98317 1.00300 1.42652 1.39055 1.51181 1.04694 1.19636 1.08135 1.15815 0.93056 0.90650 1.25567 1.03142 1.03369 0.95181 1.69835 1.44750 1.49346 0.98398 0.85150 0.79372 0.78634 0.76714 1.21161 1.22424 1.19570 1.16784 0.81850 0.88328 0.80047 1.90581 1.51545 1.54339 1.48993 0.95609 0.93329 0.92771 0.89068 0.89745 0.92225 0.92881 0.89531 0.83651 0.75107 0.78730 0.84260 0.73635 0.94579 0.93170 0.88692 0.91917 0.93797 0.94236 0.90742 0.79831 0.94234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 7.91 71.98 0.57 -2.14 16 2 C -0.10 -0.88 3.13 -10.80 -0.03 -0.91 16 3 C -0.14 -0.77 9.19 71.98 0.66 -0.11 16 4 C 0.09 0.63 4.92 86.38 0.43 1.05 16 5 N -0.48 -5.90 2.47 -649.68 -1.61 -7.51 16 6 C 0.19 0.75 10.25 83.56 0.86 1.60 16 7 C -0.24 -1.88 9.99 21.99 0.22 -1.66 16 8 C 0.07 1.41 9.70 22.83 0.22 1.63 16 9 C -0.33 -9.51 5.92 -19.79 -0.12 -9.62 16 10 C 0.56 22.31 7.73 86.56 0.67 22.98 16 11 O -0.60 -28.40 16.41 -4.16 -0.07 -28.47 16 12 N -0.71 -28.02 5.47 -466.69 -2.55 -30.57 16 13 C 0.13 5.69 5.57 86.38 0.48 6.17 16 14 C -0.11 -4.26 4.87 30.60 0.15 -4.11 16 15 C 0.17 7.19 2.89 44.99 0.13 7.32 16 16 H 0.04 1.96 8.08 -2.39 -0.02 1.94 16 17 C -0.15 -5.68 9.49 71.98 0.68 -5.00 16 18 N -0.74 -40.04 4.57 -322.93 -1.48 -41.52 16 19 C -0.23 -13.91 9.93 84.03 0.83 -13.07 16 20 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 21 C -0.08 -4.96 5.50 84.86 0.47 -4.49 16 22 N -0.97 -63.53 13.06 21.65 0.28 -63.25 16 23 Si 0.97 49.32 29.55 68.60 2.03 51.34 16 24 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 25 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 26 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 27 C 0.53 12.84 6.00 85.17 0.51 13.35 16 28 O -0.57 -16.95 11.38 -4.96 -0.06 -17.01 16 29 H 0.02 0.62 6.03 -2.39 -0.01 0.60 16 30 H 0.05 1.05 7.95 -2.39 -0.02 1.03 16 31 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 35 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.09 1.06 7.39 -2.39 -0.02 1.04 16 37 H 0.15 -0.38 8.00 -2.39 -0.02 -0.39 16 38 H 0.23 -2.00 8.02 -2.91 -0.02 -2.03 16 39 H 0.20 -0.06 8.06 -2.91 -0.02 -0.08 16 40 H 0.14 3.00 7.70 -2.91 -0.02 2.98 16 41 H 0.42 15.22 5.07 -92.77 -0.47 14.75 16 42 H 0.04 1.86 7.75 -2.39 -0.02 1.84 16 43 H 0.05 2.21 8.14 -2.39 -0.02 2.20 16 44 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 45 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.37 21.85 7.80 -92.71 -0.72 21.13 16 50 H 0.25 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -90.00 404.79 3.02 -86.97 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: -0.26 Total: 37.00 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 6.73 Total: 12.99 kcal Atomic # 7 Polarization: -137.49 SS G_CDS: -5.35 Total: -142.84 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -0.12 Total: -45.47 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 2.03 Total: 51.34 kcal Total: -90.00 3.02 -86.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567231734.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.442 kcal (2) G-P(sol) polarization free energy of solvation -89.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds