Wall clock time and date at job start Tue Mar 31 2020 18:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46931 * 2 1 4 4 C 1.50697 * 109.47284 * 120.00151 * 2 1 3 5 5 O 1.34253 * 126.52837 * 300.18780 * 4 2 1 6 6 C 1.34045 * 108.23187 * 180.26524 * 5 4 2 7 7 N 1.29941 * 109.24060 * 359.73479 * 6 5 4 8 8 C 1.36062 * 108.47639 * 359.97438 * 7 6 5 9 9 C 1.47418 * 126.44872 * 180.02562 * 8 7 6 10 10 O 1.21618 * 120.00121 * 174.14917 * 9 8 7 11 11 N 1.34777 * 119.99998 * 354.14511 * 9 8 7 12 12 C 1.46931 * 120.63144 * 173.98249 * 11 9 8 13 13 C 1.53194 * 108.77680 * 233.63311 * 12 11 9 14 14 C 1.53045 * 109.31083 * 305.36734 * 13 12 11 15 15 C 1.52994 * 109.45916 * 181.38410 * 14 13 12 16 16 H 1.08996 * 109.47662 * 299.97210 * 15 14 13 17 17 C 1.53009 * 109.47135 * 59.97107 * 15 14 13 18 18 N 1.46500 * 109.47319 * 179.97438 * 15 14 13 19 19 C 1.36939 * 120.00002 * 155.00051 * 18 15 14 20 20 H 1.07995 * 120.00080 * 359.97438 * 19 18 15 21 21 C 1.38815 * 119.99739 * 180.02562 * 19 18 15 22 22 N 1.31618 * 120.00182 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99733 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47491 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47536 * 119.99589 * 23 21 19 26 26 H 1.48503 * 109.46808 * 239.99898 * 23 21 19 27 27 C 1.53031 * 109.52900 * 61.37112 * 14 13 12 28 28 C 1.46919 * 120.62953 * 354.00844 * 11 9 8 29 29 H 1.08997 * 109.46914 * 299.99928 * 1 2 3 30 30 H 1.08998 * 109.47490 * 60.00146 * 1 2 3 31 31 H 1.08999 * 109.47030 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46774 * 240.00280 * 2 1 3 33 33 H 1.08997 * 109.47263 * 60.00286 * 3 2 1 34 34 H 1.09009 * 109.47017 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47387 * 300.00181 * 3 2 1 36 36 H 1.07994 * 125.38050 * 179.69524 * 6 5 4 37 37 H 1.08996 * 109.58354 * 113.84360 * 12 11 9 38 38 H 1.09005 * 109.58464 * 353.41696 * 12 11 9 39 39 H 1.08992 * 109.49760 * 185.41610 * 13 12 11 40 40 H 1.09001 * 109.52613 * 65.32680 * 13 12 11 41 41 H 1.09003 * 109.45864 * 301.35808 * 14 13 12 42 42 H 1.08998 * 109.47303 * 179.97438 * 17 15 14 43 43 H 1.09004 * 109.46864 * 59.99809 * 17 15 14 44 44 H 1.09000 * 109.47077 * 299.99659 * 17 15 14 45 45 H 0.97002 * 120.00088 * 335.00385 * 18 15 14 46 46 H 0.96997 * 120.00097 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.50360 * 58.57810 * 27 14 13 48 48 H 1.09007 * 109.49990 * 178.67698 * 27 14 13 49 49 H 1.09005 * 109.58510 * 246.15292 * 28 11 9 50 50 H 1.08998 * 109.58968 * 6.43966 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.7873 -0.3700 2.5057 6 6 2.4159 -1.2463 3.3019 7 7 3.0373 -2.1212 2.5692 8 6 2.8175 -1.8216 1.2603 9 6 3.3375 -2.5582 0.0940 10 8 2.9813 -2.2510 -1.0275 11 7 4.2079 -3.5720 0.2706 12 6 4.6336 -4.3998 -0.8663 13 6 4.3841 -5.8722 -0.5250 14 6 5.0809 -6.2108 0.7949 15 6 4.8629 -7.6895 1.1217 16 1 3.7951 -7.8877 1.2137 17 6 5.4467 -8.5511 0.0002 18 7 5.5303 -8.0141 2.3848 19 6 5.0888 -9.0663 3.1418 20 1 4.2484 -9.6567 2.8079 21 6 5.7209 -9.3736 4.3389 22 7 6.7448 -8.6538 4.7461 23 14 5.1191 -10.8094 5.3711 24 1 3.9627 -11.4531 4.6976 25 1 6.2146 -11.7995 5.5285 26 1 4.7011 -10.3168 6.7083 27 6 4.4975 -5.3493 1.9171 28 6 4.7485 -3.8709 1.6036 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 2.4077 -1.2276 4.3816 37 1 5.6956 -4.2432 -1.0548 38 1 4.0591 -4.1276 -1.7518 39 1 4.7836 -6.5025 -1.3194 40 1 3.3128 -6.0468 -0.4258 41 1 6.1489 -6.0129 0.7030 42 1 5.2918 -9.6046 0.2331 43 1 6.5146 -8.3529 -0.0918 44 1 4.9500 -8.3097 -0.9396 45 1 6.2849 -7.4836 2.6849 46 1 7.1867 -8.8687 5.5824 47 1 3.4250 -5.5282 1.9931 48 1 4.9777 -5.6074 2.8611 49 1 5.8200 -3.6712 1.6165 50 1 4.2517 -3.2480 2.3475 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567633834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:58 Heat of formation + Delta-G solvation = -4.168794 kcal Electronic energy + Delta-G solvation = -29983.127268 eV Core-core repulsion = 26012.325856 eV Total energy + Delta-G solvation = -3970.801412 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.72770 -39.99656 -37.88991 -36.09140 -35.30309 -35.01361 -32.79871 -31.00704 -30.63491 -29.83784 -28.23267 -27.54292 -25.61932 -24.45767 -23.71521 -23.23526 -22.58279 -21.24311 -20.66201 -19.67790 -19.26591 -17.66247 -17.06329 -17.00220 -16.60223 -15.92924 -15.28531 -15.17118 -14.99505 -14.75219 -14.09215 -13.90977 -13.85964 -13.70194 -13.54674 -13.50479 -13.32574 -12.72154 -12.58093 -12.55124 -12.41971 -11.97831 -11.84547 -11.63866 -11.61076 -11.52549 -11.38097 -11.05385 -10.98427 -10.85164 -10.69765 -10.61131 -10.18588 -10.09329 -10.08147 -9.81549 -9.52777 -9.33803 -9.19413 -8.85235 -8.45903 -6.89125 -5.72420 -2.99681 0.90647 1.83256 2.31467 3.00186 3.20940 3.44898 3.51036 3.52756 3.81392 4.21331 4.43899 4.62160 4.65730 4.71011 4.93645 5.09338 5.16112 5.22976 5.24708 5.25110 5.41242 5.43308 5.43611 5.51775 5.53830 5.58340 5.61386 5.69405 5.80988 5.82347 5.84616 5.95741 6.01377 6.06086 6.13181 6.17071 6.27109 6.42394 6.47948 6.53306 6.64179 6.77189 6.77961 6.93164 7.03847 7.20188 7.21449 7.51575 7.75159 8.11011 8.46736 9.57864 10.17124 10.52108 11.50470 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016600 B = 0.002767 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.294711 B =10115.843031 C =11202.950191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.029 4.029 3 C -0.146 4.146 4 C 0.049 3.951 5 O -0.196 6.196 6 C 0.176 3.824 7 N -0.454 5.454 8 C -0.068 4.068 9 C 0.600 3.400 10 O -0.548 6.548 11 N -0.585 5.585 12 C 0.112 3.888 13 C -0.127 4.127 14 C -0.092 4.092 15 C 0.178 3.822 16 H 0.043 0.957 17 C -0.166 4.166 18 N -0.722 5.722 19 C -0.231 4.231 20 H 0.068 0.932 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.903 3.097 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.293 1.293 27 C -0.114 4.114 28 C 0.061 3.939 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.134 0.866 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.256 0.744 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.045 0.955 44 H 0.038 0.962 45 H 0.383 0.617 46 H 0.253 0.747 47 H 0.058 0.942 48 H 0.089 0.911 49 H 0.058 0.942 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.599 20.676 -8.903 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.047 4.047 3 C -0.204 4.204 4 C -0.007 4.007 5 O -0.082 6.082 6 C -0.051 4.051 7 N -0.182 5.182 8 C -0.187 4.187 9 C 0.388 3.612 10 O -0.427 6.427 11 N -0.315 5.315 12 C -0.010 4.010 13 C -0.165 4.165 14 C -0.111 4.111 15 C 0.068 3.932 16 H 0.062 0.938 17 C -0.226 4.226 18 N -0.363 5.363 19 C -0.362 4.362 20 H 0.086 0.914 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.735 3.265 24 H -0.207 1.207 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.152 4.152 28 C -0.061 4.061 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.272 0.728 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.217 0.783 46 H 0.063 0.937 47 H 0.076 0.924 48 H 0.107 0.893 49 H 0.076 0.924 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.520 20.183 -9.161 24.123 hybrid contribution -0.165 -0.474 0.907 1.036 sum -9.685 19.709 -8.254 23.460 Atomic orbital electron populations 1.21844 0.93105 1.02722 1.02636 1.20313 0.96819 0.96269 0.91325 1.21862 1.01613 0.94196 1.02706 1.23744 0.97354 0.95496 0.84135 1.84353 1.58679 1.49003 1.16182 1.28280 0.92333 0.85475 0.99037 1.70405 1.21290 1.25017 1.01530 1.21487 1.06156 0.99129 0.91961 1.16775 0.78690 0.79701 0.86059 1.90694 1.60934 1.67386 1.23712 1.47963 1.42829 1.30035 1.10718 1.21701 1.00019 0.90375 0.88919 1.22010 1.01377 0.94527 0.98626 1.21415 0.99431 0.96587 0.93694 1.20213 0.95822 0.90221 0.86918 0.93848 1.22496 1.00502 1.01345 0.98254 1.42417 1.37684 1.36279 1.19966 1.19272 1.11101 1.05672 1.00201 0.91354 1.24698 0.98509 0.99547 0.98353 1.69664 1.23956 1.41408 1.23232 0.86170 0.77742 0.82243 0.80384 1.20683 1.22016 1.21989 1.21780 1.01333 0.92238 0.99840 1.23077 0.99309 0.99568 0.84161 0.92255 0.91132 0.92062 0.84808 0.92217 0.92188 0.91114 0.72839 0.91470 0.89374 0.90393 0.91785 0.91566 0.93099 0.93628 0.94335 0.78338 0.93701 0.92358 0.89261 0.92388 0.83590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.18 37.16 0.34 -0.79 16 2 C -0.03 -0.27 3.24 -91.77 -0.30 -0.57 16 3 C -0.15 -1.08 9.17 37.16 0.34 -0.74 16 4 C 0.05 0.55 5.94 -35.08 -0.21 0.34 16 5 O -0.20 -1.90 10.73 6.53 0.07 -1.83 16 6 C 0.18 1.56 13.19 51.96 0.69 2.25 16 7 N -0.45 -5.64 7.73 -11.49 -0.09 -5.72 16 8 C -0.07 -0.91 6.73 -83.02 -0.56 -1.47 16 9 C 0.60 8.99 7.68 -12.52 -0.10 8.90 16 10 O -0.55 -8.74 13.94 5.26 0.07 -8.67 16 11 N -0.59 -8.54 2.97 -174.03 -0.52 -9.06 16 12 C 0.11 1.50 6.42 -3.71 -0.02 1.48 16 13 C -0.13 -1.77 5.04 -26.61 -0.13 -1.91 16 14 C -0.09 -1.52 1.79 -90.58 -0.16 -1.68 16 15 C 0.18 3.52 2.47 -67.93 -0.17 3.35 16 16 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 17 C -0.17 -3.02 9.14 37.16 0.34 -2.68 16 18 N -0.72 -17.77 4.41 -53.43 -0.24 -18.00 16 19 C -0.23 -6.37 9.93 -15.06 -0.15 -6.52 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 22 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 23 Si 0.90 22.48 29.55 -169.99 -5.02 17.45 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 C -0.11 -1.92 5.22 -26.61 -0.14 -2.06 16 28 C 0.06 0.90 6.33 -3.71 -0.02 0.87 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.13 1.49 5.55 -51.93 -0.29 1.20 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.17 7.04 -51.93 -0.37 0.81 16 39 H 0.08 0.99 6.36 -51.93 -0.33 0.66 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.04 0.58 6.40 -51.93 -0.33 0.25 16 45 H 0.38 10.01 7.58 -40.82 -0.31 9.70 16 46 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.09 1.73 7.41 -51.92 -0.38 1.35 16 49 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.15 2.15 3.66 -77.43 -0.28 1.86 16 LS Contribution 392.78 15.07 5.92 5.92 Total: -1.00 -32.45 392.78 -7.60 -40.05 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -8.18 Total: 8.86 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -0.35 Total: -1.75 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -0.12 Total: -60.03 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.14 Total: -10.50 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.45 -7.60 -40.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567633834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.881 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds