Wall clock time and date at job start Tue Mar 31 2020 18:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46931 * 2 1 4 4 C 1.50697 * 109.47284 * 120.00151 * 2 1 3 5 5 O 1.34253 * 126.52837 * 300.18780 * 4 2 1 6 6 C 1.34045 * 108.23187 * 180.26524 * 5 4 2 7 7 N 1.29941 * 109.24060 * 359.73479 * 6 5 4 8 8 C 1.36062 * 108.47639 * 359.97438 * 7 6 5 9 9 C 1.47418 * 126.44872 * 180.02562 * 8 7 6 10 10 O 1.21618 * 120.00121 * 174.14917 * 9 8 7 11 11 N 1.34777 * 119.99998 * 354.14511 * 9 8 7 12 12 C 1.46931 * 120.63144 * 173.98249 * 11 9 8 13 13 C 1.53194 * 108.77680 * 233.63311 * 12 11 9 14 14 C 1.53045 * 109.31083 * 305.36734 * 13 12 11 15 15 C 1.52994 * 109.45916 * 181.38410 * 14 13 12 16 16 H 1.08996 * 109.47662 * 299.97210 * 15 14 13 17 17 C 1.53009 * 109.47135 * 59.97107 * 15 14 13 18 18 N 1.46500 * 109.47319 * 179.97438 * 15 14 13 19 19 C 1.36939 * 120.00002 * 155.00051 * 18 15 14 20 20 H 1.07995 * 120.00080 * 359.97438 * 19 18 15 21 21 C 1.38815 * 119.99739 * 180.02562 * 19 18 15 22 22 N 1.31618 * 120.00182 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99733 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47491 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47536 * 119.99589 * 23 21 19 26 26 H 1.48503 * 109.46808 * 239.99898 * 23 21 19 27 27 C 1.53031 * 109.52900 * 61.37112 * 14 13 12 28 28 C 1.46919 * 120.62953 * 354.00844 * 11 9 8 29 29 H 1.08997 * 109.46914 * 299.99928 * 1 2 3 30 30 H 1.08998 * 109.47490 * 60.00146 * 1 2 3 31 31 H 1.08999 * 109.47030 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46774 * 240.00280 * 2 1 3 33 33 H 1.08997 * 109.47263 * 60.00286 * 3 2 1 34 34 H 1.09009 * 109.47017 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47387 * 300.00181 * 3 2 1 36 36 H 1.07994 * 125.38050 * 179.69524 * 6 5 4 37 37 H 1.08996 * 109.58354 * 113.84360 * 12 11 9 38 38 H 1.09005 * 109.58464 * 353.41696 * 12 11 9 39 39 H 1.08992 * 109.49760 * 185.41610 * 13 12 11 40 40 H 1.09001 * 109.52613 * 65.32680 * 13 12 11 41 41 H 1.09003 * 109.45864 * 301.35808 * 14 13 12 42 42 H 1.08998 * 109.47303 * 179.97438 * 17 15 14 43 43 H 1.09004 * 109.46864 * 59.99809 * 17 15 14 44 44 H 1.09000 * 109.47077 * 299.99659 * 17 15 14 45 45 H 0.97002 * 120.00088 * 335.00385 * 18 15 14 46 46 H 0.96997 * 120.00097 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.50360 * 58.57810 * 27 14 13 48 48 H 1.09007 * 109.49990 * 178.67698 * 27 14 13 49 49 H 1.09005 * 109.58510 * 246.15292 * 28 11 9 50 50 H 1.08998 * 109.58968 * 6.43966 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.7873 -0.3700 2.5057 6 6 2.4159 -1.2463 3.3019 7 7 3.0373 -2.1212 2.5692 8 6 2.8175 -1.8216 1.2603 9 6 3.3375 -2.5582 0.0940 10 8 2.9813 -2.2510 -1.0275 11 7 4.2079 -3.5720 0.2706 12 6 4.6336 -4.3998 -0.8663 13 6 4.3841 -5.8722 -0.5250 14 6 5.0809 -6.2108 0.7949 15 6 4.8629 -7.6895 1.1217 16 1 3.7951 -7.8877 1.2137 17 6 5.4467 -8.5511 0.0002 18 7 5.5303 -8.0141 2.3848 19 6 5.0888 -9.0663 3.1418 20 1 4.2484 -9.6567 2.8079 21 6 5.7209 -9.3736 4.3389 22 7 6.7448 -8.6538 4.7461 23 14 5.1191 -10.8094 5.3711 24 1 3.9627 -11.4531 4.6976 25 1 6.2146 -11.7995 5.5285 26 1 4.7011 -10.3168 6.7083 27 6 4.4975 -5.3493 1.9171 28 6 4.7485 -3.8709 1.6036 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 2.4077 -1.2276 4.3816 37 1 5.6956 -4.2432 -1.0548 38 1 4.0591 -4.1276 -1.7518 39 1 4.7836 -6.5025 -1.3194 40 1 3.3128 -6.0468 -0.4258 41 1 6.1489 -6.0129 0.7030 42 1 5.2918 -9.6046 0.2331 43 1 6.5146 -8.3529 -0.0918 44 1 4.9500 -8.3097 -0.9396 45 1 6.2849 -7.4836 2.6849 46 1 7.1867 -8.8687 5.5824 47 1 3.4250 -5.5282 1.9931 48 1 4.9777 -5.6074 2.8611 49 1 5.8200 -3.6712 1.6165 50 1 4.2517 -3.2480 2.3475 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567633834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:57 Heat of formation + Delta-G solvation = -24.681598 kcal Electronic energy + Delta-G solvation = -29984.016770 eV Core-core repulsion = 26012.325856 eV Total energy + Delta-G solvation = -3971.690914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.54770 -41.15986 -39.21853 -37.11630 -36.46975 -35.96806 -34.56056 -32.48848 -32.03559 -30.76997 -29.91172 -28.12677 -26.87350 -26.01884 -24.80005 -24.42722 -23.75388 -22.41356 -21.68543 -21.02990 -20.43460 -19.16661 -18.55788 -17.83786 -17.60501 -16.94671 -16.76833 -16.23436 -16.02994 -15.76869 -15.62640 -15.45024 -15.10505 -14.98275 -14.63273 -14.55194 -14.24378 -14.13048 -14.00255 -13.73224 -13.47605 -13.11145 -13.03698 -12.86256 -12.78124 -12.62682 -12.46705 -12.29985 -12.24989 -12.17711 -12.16086 -12.11008 -11.91236 -11.69341 -11.44541 -11.21192 -11.17364 -10.94214 -10.45077 -10.07815 -9.61660 -8.94212 -7.90286 -5.16703 0.02460 0.98900 1.47148 1.47399 1.52911 1.57010 1.96165 2.16072 2.58020 3.01363 3.42920 3.43122 3.56917 3.76599 3.88044 3.90521 3.96065 4.06581 4.15912 4.21788 4.27259 4.40676 4.47043 4.52697 4.56665 4.59597 4.64604 4.72169 4.79022 4.82091 4.85637 4.86375 4.89306 4.96066 5.03540 5.06890 5.09234 5.14255 5.21795 5.25775 5.29482 5.36134 5.46778 5.50557 5.56875 5.65581 5.78799 6.24086 6.32595 6.50171 6.99854 7.38628 8.16368 8.40087 9.33321 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016600 B = 0.002767 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.294711 B =10115.843031 C =11202.950191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.032 4.032 3 C -0.141 4.141 4 C 0.057 3.943 5 O -0.191 6.191 6 C 0.198 3.802 7 N -0.491 5.491 8 C -0.101 4.101 9 C 0.594 3.406 10 O -0.564 6.564 11 N -0.590 5.590 12 C 0.112 3.888 13 C -0.116 4.116 14 C -0.082 4.082 15 C 0.173 3.827 16 H 0.032 0.968 17 C -0.157 4.157 18 N -0.731 5.731 19 C -0.230 4.230 20 H 0.069 0.931 21 C -0.075 4.075 22 N -0.967 5.967 23 Si 0.965 3.035 24 H -0.270 1.270 25 H -0.295 1.295 26 H -0.294 1.294 27 C -0.103 4.103 28 C 0.069 3.931 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.088 0.912 36 H 0.302 0.698 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.031 0.969 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.373 0.627 46 H 0.249 0.751 47 H 0.043 0.957 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.764 21.873 -9.452 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.050 4.050 3 C -0.198 4.198 4 C 0.000 4.000 5 O -0.077 6.077 6 C -0.029 4.029 7 N -0.219 5.219 8 C -0.219 4.219 9 C 0.383 3.617 10 O -0.445 6.445 11 N -0.320 5.320 12 C -0.010 4.010 13 C -0.154 4.154 14 C -0.102 4.102 15 C 0.065 3.935 16 H 0.050 0.950 17 C -0.216 4.216 18 N -0.371 5.371 19 C -0.362 4.362 20 H 0.087 0.913 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.795 3.205 24 H -0.195 1.195 25 H -0.223 1.223 26 H -0.221 1.221 27 C -0.141 4.141 28 C -0.053 4.053 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.132 0.868 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.316 0.684 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.205 0.795 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.710 21.371 -9.760 25.820 hybrid contribution 0.131 -0.784 1.067 1.331 sum -10.579 20.587 -8.693 24.725 Atomic orbital electron populations 1.21827 0.91740 1.02253 1.04005 1.20367 0.97880 0.97013 0.89746 1.21839 1.01011 0.92930 1.04031 1.24038 0.96175 0.94703 0.85121 1.84391 1.58657 1.49020 1.15655 1.29285 0.89791 0.83565 1.00305 1.70239 1.23316 1.26850 1.01519 1.21395 1.08074 1.00415 0.92023 1.17055 0.78387 0.79704 0.86520 1.90676 1.61426 1.67909 1.24459 1.48011 1.42972 1.30311 1.10680 1.21762 1.00907 0.89581 0.88704 1.21923 1.00631 0.95462 0.97412 1.21296 0.99706 0.94153 0.94994 1.20422 0.94691 0.92692 0.85657 0.95027 1.22351 1.00666 0.99574 0.99026 1.42569 1.37589 1.35516 1.21457 1.19574 1.10482 1.05827 1.00328 0.91328 1.25432 0.99190 1.02296 0.99804 1.69808 1.25368 1.43146 1.23559 0.85184 0.77358 0.79298 0.78627 1.19473 1.22268 1.22131 1.21601 0.99859 0.94008 0.98656 1.22966 0.99539 0.97921 0.84844 0.91345 0.89311 0.93419 0.86787 0.91333 0.93096 0.89342 0.68363 0.90126 0.88998 0.88381 0.92449 0.91587 0.95007 0.93740 0.90740 0.79525 0.94201 0.93820 0.92306 0.92134 0.83054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.18 71.98 0.66 -1.31 16 2 C -0.03 -0.56 3.24 -11.54 -0.04 -0.60 16 3 C -0.14 -1.84 9.17 71.98 0.66 -1.18 16 4 C 0.06 1.23 5.94 25.19 0.15 1.38 16 5 O -0.19 -3.34 10.73 0.47 0.00 -3.33 16 6 C 0.20 3.10 13.19 130.52 1.72 4.82 16 7 N -0.49 -11.85 7.73 -305.16 -2.36 -14.21 16 8 C -0.10 -2.68 6.73 40.41 0.27 -2.41 16 9 C 0.59 17.83 7.68 86.66 0.67 18.50 16 10 O -0.56 -18.04 13.94 -4.09 -0.06 -18.10 16 11 N -0.59 -17.05 2.97 -822.75 -2.45 -19.50 16 12 C 0.11 2.87 6.42 86.36 0.55 3.42 16 13 C -0.12 -3.07 5.04 30.67 0.15 -2.92 16 14 C -0.08 -2.69 1.79 -10.77 -0.02 -2.71 16 15 C 0.17 6.86 2.47 44.99 0.11 6.97 16 16 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 17 C -0.16 -5.51 9.14 71.99 0.66 -4.85 16 18 N -0.73 -36.64 4.41 -322.94 -1.42 -38.06 16 19 C -0.23 -12.82 9.93 84.03 0.83 -11.99 16 20 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 21 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 22 N -0.97 -59.12 13.06 21.65 0.28 -58.83 16 23 Si 0.97 46.66 29.55 68.60 2.03 48.69 16 24 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 26 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 27 C -0.10 -3.55 5.22 30.67 0.16 -3.39 16 28 C 0.07 2.07 6.33 86.37 0.55 2.62 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.11 2.53 5.55 -2.38 -0.01 2.52 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.75 8.14 -2.38 -0.02 0.74 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.30 1.28 8.06 -2.91 -0.02 1.26 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.09 2.33 7.04 -2.38 -0.02 2.31 16 39 H 0.10 2.22 6.36 -2.39 -0.02 2.20 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.07 2.07 6.40 -2.39 -0.02 2.06 16 45 H 0.37 20.04 7.58 -92.71 -0.70 19.34 16 46 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 47 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 48 H 0.06 2.39 7.41 -2.38 -0.02 2.37 16 49 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 50 H 0.15 4.49 3.66 -52.74 -0.19 4.30 16 Total: -1.00 -71.38 392.78 3.65 -67.73 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: 0.06 Total: 33.12 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 7.56 Total: 2.50 kcal Atomic # 7 Polarization: -124.66 SS G_CDS: -5.94 Total: -130.60 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.05 Total: -21.43 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -71.38 3.65 -67.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567633834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.049 kcal (2) G-P(sol) polarization free energy of solvation -71.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds