Wall clock time and date at job start Tue Mar 31 2020 19:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09005 * 109.47174 * 2 1 4 4 N 1.46505 * 109.47512 * 119.99533 * 2 1 3 5 5 C 1.34770 * 120.00012 * 275.00803 * 4 2 1 6 6 O 1.21497 * 120.00461 * 359.97438 * 5 4 2 7 7 C 1.48340 * 119.99814 * 179.97438 * 5 4 2 8 8 N 1.31489 * 127.15106 * 359.97438 * 7 5 4 9 9 O 1.21438 * 111.52186 * 179.97438 * 8 7 5 10 10 C 1.33185 * 111.56807 * 359.93948 * 9 8 7 11 11 C 1.35376 * 106.63648 * 0.09850 * 10 9 8 12 12 C 1.50064 * 124.93804 * 179.77600 * 11 10 9 13 13 C 1.53551 * 108.23204 * 343.89831 * 12 11 10 14 14 C 1.52996 * 109.46606 * 169.21075 * 13 12 11 15 15 C 1.53001 * 109.46558 * 289.18798 * 13 12 11 16 16 C 1.53082 * 109.52100 * 49.18908 * 13 12 11 17 17 C 1.50606 * 129.60487 * 180.10216 * 10 9 8 18 18 C 1.52998 * 109.47391 * 240.00019 * 2 1 3 19 19 H 1.09003 * 109.47294 * 299.99732 * 18 2 1 20 20 C 1.53000 * 109.47475 * 179.97438 * 18 2 1 21 21 N 1.46495 * 109.47233 * 59.99732 * 18 2 1 22 22 C 1.36939 * 120.00071 * 205.00261 * 21 18 2 23 23 H 1.08000 * 120.00265 * 0.02562 * 22 21 18 24 24 C 1.38813 * 120.00137 * 179.97438 * 22 21 18 25 25 N 1.31620 * 120.00284 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 119.99822 * 0.02562 * 24 22 21 27 27 H 1.48507 * 109.47149 * 89.99994 * 26 24 22 28 28 H 1.48501 * 109.47180 * 209.99482 * 26 24 22 29 29 H 1.48495 * 109.47341 * 329.99780 * 26 24 22 30 30 H 1.09005 * 109.47174 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47711 * 299.99841 * 1 2 3 32 32 H 1.09001 * 109.47460 * 60.00311 * 1 2 3 33 33 H 0.97004 * 119.99335 * 95.00027 * 4 2 1 34 34 H 1.08998 * 109.70954 * 103.58179 * 12 11 10 35 35 H 1.08997 * 109.71182 * 224.17719 * 12 11 10 36 36 H 1.09000 * 109.47066 * 59.99628 * 14 13 12 37 37 H 1.08992 * 109.47670 * 180.02562 * 14 13 12 38 38 H 1.09006 * 109.46936 * 300.00410 * 14 13 12 39 39 H 1.09002 * 109.47103 * 60.00190 * 15 13 12 40 40 H 1.08998 * 109.47152 * 179.97438 * 15 13 12 41 41 H 1.08997 * 109.47026 * 299.99760 * 15 13 12 42 42 H 1.08997 * 109.42808 * 170.08264 * 16 13 12 43 43 H 1.08991 * 109.41313 * 50.24484 * 16 13 12 44 44 H 1.09001 * 109.68994 * 283.00599 * 17 10 9 45 45 H 1.09006 * 109.69425 * 43.59171 * 17 10 9 46 46 H 1.09001 * 109.47398 * 59.99657 * 20 18 2 47 47 H 1.08998 * 109.47263 * 179.97438 * 20 18 2 48 48 H 1.09005 * 109.47153 * 300.00019 * 20 18 2 49 49 H 0.97003 * 120.00050 * 25.00228 * 21 18 2 50 50 H 0.97002 * 120.00049 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8583 1.1608 2.4116 7 6 2.6410 -0.7175 3.5685 8 7 2.9910 -1.9810 3.6687 9 8 3.3543 -2.2546 4.7947 10 6 3.2936 -1.1954 5.5997 11 6 2.8333 -0.1656 4.8512 12 6 2.6031 1.2286 5.3566 13 6 2.5805 1.1857 6.8913 14 6 2.6177 2.6126 7.4419 15 6 1.3019 0.4904 7.3632 16 6 3.7992 0.4109 7.3993 17 6 3.6459 -1.0773 7.0592 18 6 2.0400 -0.7212 -1.2492 19 1 1.6767 -1.7489 -1.2492 20 6 3.5700 -0.7207 -1.2496 21 7 1.5516 -0.0307 -2.4454 22 6 1.4209 -0.7139 -3.6249 23 1 1.6774 -1.7619 -3.6734 24 6 0.9577 -0.0597 -4.7583 25 7 0.8324 -0.7162 -5.8921 26 14 0.5134 1.7527 -4.6744 27 1 1.7105 2.5712 -4.9944 28 1 -0.5624 2.0446 -5.6556 29 1 0.0389 2.0834 -3.3067 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.2491 -1.6317 1.1526 34 1 3.4092 1.8798 5.0188 35 1 1.6488 1.6015 4.9846 36 1 1.7495 3.1640 7.0809 37 1 2.6021 2.5824 8.5312 38 1 3.5284 3.1083 7.1054 39 1 1.2751 -0.5262 6.9708 40 1 1.2860 0.4595 8.4526 41 1 0.4339 1.0422 7.0023 42 1 3.8795 0.5295 8.4799 43 1 4.6997 0.8004 6.9247 44 1 2.8514 -1.5127 7.6652 45 1 4.5840 -1.5971 7.2539 46 1 3.9337 -1.2342 -0.3596 47 1 3.9333 -1.2349 -2.1393 48 1 3.9330 0.3072 -1.2498 49 1 1.3209 0.9105 -2.4019 50 1 0.5091 -0.2590 -6.6842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570621047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:48 Heat of formation + Delta-G solvation = 19.747891 kcal Electronic energy + Delta-G solvation = -29704.646366 eV Core-core repulsion = 25734.882059 eV Total energy + Delta-G solvation = -3969.764307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.33388 -39.82303 -39.37764 -36.96859 -34.28681 -34.05818 -33.22702 -31.85064 -30.74431 -29.72937 -28.91212 -27.75967 -27.58520 -25.01005 -24.09733 -23.86323 -22.29224 -22.04403 -20.41448 -20.14868 -18.76320 -18.13974 -17.93408 -17.44499 -16.69539 -15.86430 -15.48988 -15.00938 -14.88956 -14.81516 -14.54444 -14.22289 -13.90893 -13.74224 -13.63838 -13.50218 -13.45303 -12.95517 -12.53885 -12.52268 -12.40883 -12.20285 -12.16501 -12.07118 -11.89837 -11.67311 -11.40548 -11.15028 -11.11828 -11.05057 -10.93565 -10.82535 -10.78661 -10.42909 -10.34520 -10.15301 -9.97184 -9.61060 -9.36731 -9.13071 -8.89182 -7.32500 -5.79450 -3.16144 0.92190 1.45275 2.58743 2.94282 3.11661 3.37091 3.40693 3.45383 3.79400 4.12755 4.17015 4.27556 4.54174 4.57274 4.58191 4.73475 4.81273 4.88861 5.06919 5.14848 5.19226 5.26497 5.31328 5.33834 5.36126 5.38368 5.40274 5.42918 5.52057 5.58749 5.60054 5.66722 5.67503 5.73274 5.89888 5.95764 5.98250 6.00573 6.04233 6.21213 6.26510 6.36596 6.46648 6.63345 6.75350 6.91273 7.41803 7.80310 7.94515 8.10014 8.38684 9.15995 9.88432 10.07346 11.38497 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023159 B = 0.002451 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.723021 B =11419.407571 C =12124.827852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.132 3.868 3 H 0.087 0.913 4 N -0.699 5.699 5 C 0.597 3.403 6 O -0.522 6.522 7 C -0.013 4.013 8 N -0.336 5.336 9 O 0.127 5.873 10 C -0.040 4.040 11 C -0.148 4.148 12 C -0.034 4.034 13 C -0.068 4.068 14 C -0.140 4.140 15 C -0.146 4.146 16 C -0.108 4.108 17 C -0.035 4.035 18 C 0.174 3.826 19 H 0.061 0.939 20 C -0.165 4.165 21 N -0.742 5.742 22 C -0.243 4.243 23 H 0.091 0.909 24 C 0.007 3.993 25 N -0.932 5.932 26 Si 0.882 3.118 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.276 1.276 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.405 0.595 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.038 0.962 47 H 0.061 0.939 48 H 0.046 0.954 49 H 0.362 0.638 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.504 1.331 32.796 33.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.028 3.972 3 H 0.105 0.895 4 N -0.350 5.350 5 C 0.381 3.619 6 O -0.397 6.397 7 C -0.172 4.172 8 N -0.038 5.038 9 O 0.054 5.946 10 C -0.105 4.105 11 C -0.153 4.153 12 C -0.072 4.072 13 C -0.069 4.069 14 C -0.198 4.198 15 C -0.203 4.203 16 C -0.146 4.146 17 C -0.073 4.073 18 C 0.064 3.936 19 H 0.079 0.921 20 C -0.225 4.225 21 N -0.385 5.385 22 C -0.372 4.372 23 H 0.109 0.891 24 C -0.189 4.189 25 N -0.580 5.580 26 Si 0.712 3.288 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.202 1.202 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.240 0.760 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.115 0.885 45 H 0.111 0.889 46 H 0.057 0.943 47 H 0.080 0.920 48 H 0.065 0.935 49 H 0.196 0.804 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.276 1.025 31.669 32.122 hybrid contribution -0.269 1.367 0.023 1.393 sum 5.007 2.392 31.692 32.174 Atomic orbital electron populations 1.22079 0.94621 1.02362 1.02256 1.21462 0.94681 0.97599 0.83463 0.89464 1.45931 1.65539 1.14399 1.09150 1.16828 0.78023 0.85838 0.81261 1.90783 1.50171 1.14574 1.84159 1.23106 1.05972 0.91118 0.96962 1.74583 1.14176 1.16126 0.98937 1.84682 1.61292 1.34495 1.14173 1.24100 1.03603 0.86112 0.96653 1.20612 1.04520 0.98971 0.91189 1.20098 1.03906 0.89908 0.93258 1.20723 0.95516 0.96142 0.94473 1.21836 1.02376 0.94811 1.00741 1.21971 0.96659 1.00735 1.00939 1.21724 0.98484 0.92519 1.01839 1.20286 1.03318 0.98668 0.85041 1.20350 0.92386 0.95930 0.84950 0.92130 1.22422 0.98421 1.01173 1.00529 1.42638 1.79804 1.09443 1.06622 1.19013 1.37295 0.95631 0.85308 0.89117 1.24651 1.01251 0.97497 0.95528 1.69696 1.52442 1.35588 1.00240 0.86588 0.78204 0.86805 0.77164 1.21051 1.21713 1.20173 0.92453 0.93134 0.90405 0.75973 0.89798 0.89130 0.92147 0.92323 0.92341 0.92459 0.92322 0.92321 0.89953 0.90931 0.88536 0.88878 0.94275 0.91962 0.93453 0.80446 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.33 37.15 0.35 -2.24 16 2 C 0.13 2.22 2.21 -67.93 -0.15 2.07 16 3 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 4 N -0.70 -10.36 4.38 -54.59 -0.24 -10.60 16 5 C 0.60 9.19 7.81 -12.11 -0.09 9.10 16 6 O -0.52 -9.15 15.75 5.37 0.08 -9.06 16 7 C -0.01 -0.18 7.19 -82.82 -0.60 -0.77 16 8 N -0.34 -4.32 11.89 33.29 0.40 -3.92 16 9 O 0.13 1.37 11.18 19.20 0.21 1.59 16 10 C -0.04 -0.36 6.65 -35.37 -0.24 -0.60 16 11 C -0.15 -1.63 5.59 -104.92 -0.59 -2.21 16 12 C -0.03 -0.32 4.41 -27.90 -0.12 -0.45 16 13 C -0.07 -0.43 0.77 -154.18 -0.12 -0.55 16 14 C -0.14 -0.75 8.44 37.16 0.31 -0.44 16 15 C -0.15 -0.90 7.73 37.16 0.29 -0.61 16 16 C -0.11 -0.51 4.82 -26.47 -0.13 -0.64 16 17 C -0.04 -0.18 5.66 -27.71 -0.16 -0.33 16 18 C 0.17 3.28 2.52 -67.93 -0.17 3.11 16 19 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 20 C -0.17 -2.93 9.33 37.16 0.35 -2.59 16 21 N -0.74 -17.12 4.23 -53.43 -0.23 -17.35 16 22 C -0.24 -6.69 10.41 -15.06 -0.16 -6.85 16 23 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 24 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 25 N -0.93 -29.05 13.97 55.49 0.78 -28.28 16 26 Si 0.88 22.05 27.74 -169.99 -4.71 17.33 16 27 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.42 7.45 -51.93 -0.39 1.03 16 33 H 0.41 5.49 8.16 -40.82 -0.33 5.16 16 34 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 35 H 0.09 0.99 7.81 -51.93 -0.41 0.59 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.06 0.40 5.67 -51.93 -0.29 0.10 16 40 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.24 8.11 -51.93 -0.42 -0.18 16 43 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 44 H 0.10 0.36 6.99 -51.93 -0.36 0.00 16 45 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 47 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 48 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.36 8.34 5.45 -40.82 -0.22 8.11 16 50 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 394.99 15.07 5.95 5.95 Total: -1.00 -32.28 394.99 -7.36 -39.64 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -8.29 Total: 8.61 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -1.32 Total: -3.91 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 0.71 Total: -60.15 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.30 Total: -7.48 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.28 -7.36 -39.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570621047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.386 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds