Wall clock time and date at job start Tue Mar 31 2020 19:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09005 * 109.47174 * 2 1 4 4 N 1.46505 * 109.47512 * 119.99533 * 2 1 3 5 5 C 1.34770 * 120.00012 * 275.00803 * 4 2 1 6 6 O 1.21497 * 120.00461 * 359.97438 * 5 4 2 7 7 C 1.48340 * 119.99814 * 179.97438 * 5 4 2 8 8 N 1.31489 * 127.15106 * 359.97438 * 7 5 4 9 9 O 1.21438 * 111.52186 * 179.97438 * 8 7 5 10 10 C 1.33185 * 111.56807 * 359.93948 * 9 8 7 11 11 C 1.35376 * 106.63648 * 0.09850 * 10 9 8 12 12 C 1.50064 * 124.93804 * 179.77600 * 11 10 9 13 13 C 1.53551 * 108.23204 * 343.89831 * 12 11 10 14 14 C 1.52996 * 109.46606 * 169.21075 * 13 12 11 15 15 C 1.53001 * 109.46558 * 289.18798 * 13 12 11 16 16 C 1.53082 * 109.52100 * 49.18908 * 13 12 11 17 17 C 1.50606 * 129.60487 * 180.10216 * 10 9 8 18 18 C 1.52998 * 109.47391 * 240.00019 * 2 1 3 19 19 H 1.09003 * 109.47294 * 299.99732 * 18 2 1 20 20 C 1.53000 * 109.47475 * 179.97438 * 18 2 1 21 21 N 1.46495 * 109.47233 * 59.99732 * 18 2 1 22 22 C 1.36939 * 120.00071 * 205.00261 * 21 18 2 23 23 H 1.08000 * 120.00265 * 0.02562 * 22 21 18 24 24 C 1.38813 * 120.00137 * 179.97438 * 22 21 18 25 25 N 1.31620 * 120.00284 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 119.99822 * 0.02562 * 24 22 21 27 27 H 1.48507 * 109.47149 * 89.99994 * 26 24 22 28 28 H 1.48501 * 109.47180 * 209.99482 * 26 24 22 29 29 H 1.48495 * 109.47341 * 329.99780 * 26 24 22 30 30 H 1.09005 * 109.47174 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47711 * 299.99841 * 1 2 3 32 32 H 1.09001 * 109.47460 * 60.00311 * 1 2 3 33 33 H 0.97004 * 119.99335 * 95.00027 * 4 2 1 34 34 H 1.08998 * 109.70954 * 103.58179 * 12 11 10 35 35 H 1.08997 * 109.71182 * 224.17719 * 12 11 10 36 36 H 1.09000 * 109.47066 * 59.99628 * 14 13 12 37 37 H 1.08992 * 109.47670 * 180.02562 * 14 13 12 38 38 H 1.09006 * 109.46936 * 300.00410 * 14 13 12 39 39 H 1.09002 * 109.47103 * 60.00190 * 15 13 12 40 40 H 1.08998 * 109.47152 * 179.97438 * 15 13 12 41 41 H 1.08997 * 109.47026 * 299.99760 * 15 13 12 42 42 H 1.08997 * 109.42808 * 170.08264 * 16 13 12 43 43 H 1.08991 * 109.41313 * 50.24484 * 16 13 12 44 44 H 1.09001 * 109.68994 * 283.00599 * 17 10 9 45 45 H 1.09006 * 109.69425 * 43.59171 * 17 10 9 46 46 H 1.09001 * 109.47398 * 59.99657 * 20 18 2 47 47 H 1.08998 * 109.47263 * 179.97438 * 20 18 2 48 48 H 1.09005 * 109.47153 * 300.00019 * 20 18 2 49 49 H 0.97003 * 120.00050 * 25.00228 * 21 18 2 50 50 H 0.97002 * 120.00049 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8583 1.1608 2.4116 7 6 2.6410 -0.7175 3.5685 8 7 2.9910 -1.9810 3.6687 9 8 3.3543 -2.2546 4.7947 10 6 3.2936 -1.1954 5.5997 11 6 2.8333 -0.1656 4.8512 12 6 2.6031 1.2286 5.3566 13 6 2.5805 1.1857 6.8913 14 6 2.6177 2.6126 7.4419 15 6 1.3019 0.4904 7.3632 16 6 3.7992 0.4109 7.3993 17 6 3.6459 -1.0773 7.0592 18 6 2.0400 -0.7212 -1.2492 19 1 1.6767 -1.7489 -1.2492 20 6 3.5700 -0.7207 -1.2496 21 7 1.5516 -0.0307 -2.4454 22 6 1.4209 -0.7139 -3.6249 23 1 1.6774 -1.7619 -3.6734 24 6 0.9577 -0.0597 -4.7583 25 7 0.8324 -0.7162 -5.8921 26 14 0.5134 1.7527 -4.6744 27 1 1.7105 2.5712 -4.9944 28 1 -0.5624 2.0446 -5.6556 29 1 0.0389 2.0834 -3.3067 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.2491 -1.6317 1.1526 34 1 3.4092 1.8798 5.0188 35 1 1.6488 1.6015 4.9846 36 1 1.7495 3.1640 7.0809 37 1 2.6021 2.5824 8.5312 38 1 3.5284 3.1083 7.1054 39 1 1.2751 -0.5262 6.9708 40 1 1.2860 0.4595 8.4526 41 1 0.4339 1.0422 7.0023 42 1 3.8795 0.5295 8.4799 43 1 4.6997 0.8004 6.9247 44 1 2.8514 -1.5127 7.6652 45 1 4.5840 -1.5971 7.2539 46 1 3.9337 -1.2342 -0.3596 47 1 3.9333 -1.2349 -2.1393 48 1 3.9330 0.3072 -1.2498 49 1 1.3209 0.9105 -2.4019 50 1 0.5091 -0.2590 -6.6842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570621047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:47 Heat of formation + Delta-G solvation = -0.351567 kcal Electronic energy + Delta-G solvation = -29705.517944 eV Core-core repulsion = 25734.882059 eV Total energy + Delta-G solvation = -3970.635885 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.22686 -41.08164 -39.95386 -38.50515 -35.80517 -35.13512 -33.90582 -33.66912 -31.67688 -31.04602 -30.58152 -28.36280 -28.11533 -26.08410 -25.77448 -24.63908 -23.76288 -22.83953 -21.79581 -21.44284 -19.97733 -19.41795 -18.96770 -18.36855 -17.78620 -17.26383 -16.48341 -16.26662 -15.91999 -15.86250 -15.55990 -15.33616 -15.22730 -15.04196 -14.70886 -14.36934 -14.32520 -14.27064 -14.02005 -13.88770 -13.37739 -13.14220 -13.06535 -12.91806 -12.81589 -12.72811 -12.66912 -12.57448 -12.44886 -12.27662 -12.11803 -11.83821 -11.69448 -11.62052 -11.57703 -11.49093 -11.25413 -11.18174 -11.07241 -10.33763 -10.11674 -9.37632 -8.03243 -5.37569 -0.02699 0.61330 1.37830 1.39435 1.46291 1.68281 1.94061 1.96544 2.46919 2.79829 3.28495 3.40656 3.55614 3.57795 3.67273 3.81937 3.91573 3.97863 4.04216 4.11632 4.17927 4.21809 4.41198 4.46484 4.48472 4.61693 4.64475 4.72780 4.74130 4.79786 4.81494 4.89833 4.90482 4.92349 5.01953 5.03146 5.06791 5.14281 5.15878 5.19907 5.23871 5.30178 5.38873 5.39832 5.47208 5.54409 5.75311 6.18937 6.21945 6.82891 6.97890 7.04551 7.78335 7.97615 9.17792 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023159 B = 0.002451 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.723021 B =11419.407571 C =12124.827852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.146 3.854 3 H 0.079 0.921 4 N -0.693 5.693 5 C 0.598 3.402 6 O -0.548 6.548 7 C -0.038 4.038 8 N -0.351 5.351 9 O 0.134 5.866 10 C -0.019 4.019 11 C -0.166 4.166 12 C -0.033 4.033 13 C -0.064 4.064 14 C -0.139 4.139 15 C -0.144 4.144 16 C -0.105 4.105 17 C -0.036 4.036 18 C 0.173 3.827 19 H 0.059 0.941 20 C -0.156 4.156 21 N -0.743 5.743 22 C -0.223 4.223 23 H 0.062 0.938 24 C -0.060 4.060 25 N -0.981 5.981 26 Si 0.947 3.053 27 H -0.281 1.281 28 H -0.296 1.296 29 H -0.252 1.252 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.413 0.587 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.112 0.888 43 H 0.069 0.931 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.065 0.935 47 H 0.043 0.957 48 H 0.046 0.954 49 H 0.365 0.635 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.370 1.729 36.771 37.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.041 3.959 3 H 0.097 0.903 4 N -0.344 5.344 5 C 0.383 3.617 6 O -0.424 6.424 7 C -0.195 4.195 8 N -0.053 5.053 9 O 0.059 5.941 10 C -0.084 4.084 11 C -0.172 4.172 12 C -0.071 4.071 13 C -0.064 4.064 14 C -0.196 4.196 15 C -0.201 4.201 16 C -0.143 4.143 17 C -0.073 4.073 18 C 0.064 3.936 19 H 0.077 0.923 20 C -0.216 4.216 21 N -0.387 5.387 22 C -0.354 4.354 23 H 0.080 0.920 24 C -0.251 4.251 25 N -0.632 5.632 26 Si 0.775 3.225 27 H -0.208 1.208 28 H -0.223 1.223 29 H -0.176 1.176 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.249 0.751 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.130 0.870 43 H 0.088 0.912 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.084 0.916 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.199 0.801 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.159 1.411 35.694 36.249 hybrid contribution -0.485 1.134 -1.093 1.648 sum 5.673 2.546 34.601 35.155 Atomic orbital electron populations 1.22010 0.94427 1.02545 1.01775 1.21115 0.94685 0.96874 0.83233 0.90315 1.45772 1.65509 1.14612 1.08550 1.17061 0.77350 0.85579 0.81713 1.90764 1.51284 1.15735 1.84665 1.22964 1.07590 0.91824 0.97077 1.74567 1.14829 1.15841 1.00040 1.84653 1.60525 1.35039 1.13853 1.24840 1.01135 0.84524 0.97857 1.20845 1.05516 1.00204 0.90612 1.20106 1.02178 0.88934 0.95843 1.20716 0.96628 0.97163 0.91919 1.21829 1.01891 0.94047 1.01849 1.21964 0.95988 0.99900 1.02296 1.21765 0.97190 0.91779 1.03536 1.20629 1.05253 0.99371 0.82048 1.20476 0.93098 0.95657 0.84368 0.92325 1.22281 0.97136 1.01262 1.00931 1.42593 1.79981 1.09541 1.06575 1.18944 1.35138 0.94539 0.86787 0.92048 1.25403 1.02344 1.02146 0.95239 1.69865 1.54616 1.37593 1.01111 0.85528 0.77675 0.81198 0.78111 1.20769 1.22307 1.17614 0.91957 0.92612 0.91790 0.75105 0.90642 0.91588 0.93276 0.90400 0.92348 0.93219 0.90035 0.93774 0.86991 0.91186 0.86436 0.86322 0.91614 0.93782 0.93497 0.80128 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.90 9.33 71.98 0.67 -4.23 16 2 C 0.15 4.82 2.21 44.99 0.10 4.92 16 3 H 0.08 2.79 7.58 -2.38 -0.02 2.77 16 4 N -0.69 -20.17 4.38 -444.94 -1.95 -22.12 16 5 C 0.60 18.37 7.81 86.93 0.68 19.05 16 6 O -0.55 -19.42 15.75 -3.71 -0.06 -19.48 16 7 C -0.04 -1.01 7.19 42.55 0.31 -0.70 16 8 N -0.35 -8.69 11.89 -48.95 -0.58 -9.27 16 9 O 0.13 2.65 11.18 78.72 0.88 3.53 16 10 C -0.02 -0.30 6.65 24.99 0.17 -0.13 16 11 C -0.17 -3.51 5.59 -20.06 -0.11 -3.62 16 12 C -0.03 -0.61 4.41 29.83 0.13 -0.48 16 13 C -0.06 -0.67 0.77 -51.97 -0.04 -0.71 16 14 C -0.14 -1.22 8.44 71.98 0.61 -0.61 16 15 C -0.14 -1.47 7.73 71.98 0.56 -0.91 16 16 C -0.11 -0.59 4.82 30.76 0.15 -0.45 16 17 C -0.04 -0.21 5.66 29.96 0.17 -0.04 16 18 C 0.17 6.45 2.52 44.99 0.11 6.56 16 19 H 0.06 2.23 8.08 -2.39 -0.02 2.22 16 20 C -0.16 -5.44 9.33 71.98 0.67 -4.76 16 21 N -0.74 -34.11 4.23 -322.95 -1.37 -35.47 16 22 C -0.22 -12.49 10.41 84.03 0.87 -11.62 16 23 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 24 C -0.06 -3.50 5.50 84.86 0.47 -3.04 16 25 N -0.98 -62.78 13.97 21.65 0.30 -62.47 16 26 Si 0.95 45.79 27.74 68.60 1.90 47.69 16 27 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 28 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 29 H -0.25 -11.02 6.52 99.48 0.65 -10.37 16 30 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 2.28 7.45 -2.39 -0.02 2.26 16 33 H 0.41 10.86 8.16 -92.71 -0.76 10.10 16 34 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 35 H 0.07 1.52 7.81 -2.39 -0.02 1.50 16 36 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.06 0.51 8.14 -2.38 -0.02 0.50 16 39 H 0.05 0.58 5.67 -2.39 -0.01 0.56 16 40 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.11 0.07 8.11 -2.39 -0.02 0.05 16 43 H 0.07 0.48 8.12 -2.39 -0.02 0.46 16 44 H 0.12 0.33 6.99 -2.39 -0.02 0.31 16 45 H 0.12 0.22 8.14 -2.38 -0.02 0.20 16 46 H 0.06 1.92 7.45 -2.39 -0.02 1.90 16 47 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 49 H 0.37 16.41 5.45 -92.71 -0.50 15.90 16 50 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -71.81 394.99 4.27 -67.54 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: -0.37 Total: 30.82 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 5.51 Total: -0.77 kcal Atomic # 7 Polarization: -125.74 SS G_CDS: -3.60 Total: -129.34 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.82 Total: -15.95 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.90 Total: 47.69 kcal Total: -71.81 4.27 -67.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570621047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.192 kcal (2) G-P(sol) polarization free energy of solvation -71.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds