Wall clock time and date at job start Tue Mar 31 2020 18:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47355 * 2 1 4 4 N 1.46501 * 109.46826 * 119.99424 * 2 1 3 5 5 C 1.34775 * 120.00077 * 275.00107 * 4 2 1 6 6 O 1.21278 * 120.00160 * 359.97438 * 5 4 2 7 7 C 1.50707 * 119.99938 * 180.02562 * 5 4 2 8 8 C 1.53000 * 109.46895 * 180.02562 * 7 5 4 9 9 H 1.09002 * 110.34163 * 304.16323 * 8 7 5 10 10 C 1.51104 * 110.38951 * 66.45183 * 8 7 5 11 11 C 1.30527 * 111.10523 * 135.60605 * 10 8 7 12 12 C 1.51104 * 111.10149 * 359.61668 * 11 10 8 13 13 C 1.54632 * 110.48311 * 181.81364 * 8 7 5 14 14 C 1.53000 * 109.47326 * 239.99127 * 2 1 3 15 15 C 1.53942 * 113.73186 * 156.72970 * 14 2 1 16 16 N 1.47965 * 86.17870 * 221.92315 * 15 14 2 17 17 C 1.46895 * 110.99715 * 137.58246 * 16 15 14 18 18 C 1.50702 * 109.46955 * 70.63948 * 17 16 15 19 19 O 1.21287 * 120.00240 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99962 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00409 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00001 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00480 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00120 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00329 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47030 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47231 * 119.99957 * 25 23 21 28 28 H 1.48496 * 109.47667 * 240.00483 * 25 23 21 29 29 C 1.47962 * 90.76153 * 24.69081 * 16 15 14 30 30 H 1.08994 * 109.47602 * 300.00599 * 1 2 3 31 31 H 1.09000 * 109.46889 * 60.00569 * 1 2 3 32 32 H 1.09000 * 109.47355 * 180.02562 * 1 2 3 33 33 H 0.97005 * 120.00195 * 94.99597 * 4 2 1 34 34 H 1.08994 * 109.46984 * 59.99938 * 7 5 4 35 35 H 1.08999 * 109.46960 * 299.99434 * 7 5 4 36 36 H 1.08002 * 124.44506 * 315.33615 * 10 8 7 37 37 H 1.07991 * 124.44863 * 179.73328 * 11 10 8 38 38 H 1.08996 * 110.52393 * 225.02179 * 12 11 10 39 39 H 1.08993 * 110.29475 * 102.72697 * 12 11 10 40 40 H 1.09002 * 111.03487 * 334.53448 * 13 8 7 41 41 H 1.09000 * 111.03782 * 98.43484 * 13 8 7 42 42 H 1.09003 * 112.93863 * 288.43755 * 14 2 1 43 43 H 1.08997 * 113.75975 * 336.23797 * 15 14 2 44 44 H 1.09000 * 113.75490 * 107.60885 * 15 14 2 45 45 H 1.08998 * 109.46937 * 190.63445 * 17 16 15 46 46 H 1.08995 * 109.47467 * 310.64153 * 17 16 15 47 47 H 0.97005 * 120.00256 * 359.97438 * 20 18 17 48 48 H 0.97000 * 120.00136 * 179.97438 * 24 23 21 49 49 H 1.09005 * 113.75483 * 220.99332 * 29 16 15 50 50 H 1.08996 * 113.85822 * 89.64443 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1469 -0.0181 2.3572 6 8 1.8589 1.1588 2.4114 7 6 2.6497 -0.7283 3.5876 8 6 2.7004 0.2548 4.7589 9 1 3.3107 1.1203 4.5010 10 6 1.3050 0.6899 5.1418 11 6 1.1479 0.6784 6.4375 12 6 2.4096 0.2247 7.1344 13 6 3.2568 -0.4390 6.0239 14 6 2.0400 -0.7214 -1.2491 15 6 3.4671 -0.3156 -1.6596 16 7 2.9606 -0.3150 -3.0499 17 6 3.4684 0.8449 -3.7946 18 6 4.9422 0.6686 -4.0551 19 8 5.5135 -0.3253 -3.6590 20 7 5.6256 1.6153 -4.7283 21 6 6.9662 1.4547 -4.9659 22 1 7.4749 0.5697 -4.6131 23 6 7.6708 2.4310 -5.6594 24 7 7.0520 3.5081 -6.0882 25 14 9.4976 2.2125 -5.9824 26 1 9.9524 0.9237 -5.4013 27 1 9.7445 2.2091 -7.4467 28 1 10.2483 3.3304 -5.3564 29 6 1.5824 -0.0741 -2.5686 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2489 -1.6317 1.1529 34 1 3.6490 -1.1201 3.3981 35 1 1.9775 -1.5505 3.8327 36 1 0.5395 0.9772 4.4362 37 1 0.2355 0.9548 6.9448 38 1 2.1756 -0.4978 7.9163 39 1 2.9379 1.0803 7.5548 40 1 3.0827 -1.5144 5.9889 41 1 4.3165 -0.2204 6.1561 42 1 1.8823 -1.7993 -1.2113 43 1 3.7641 0.6696 -1.3001 44 1 4.2152 -1.0841 -1.4652 45 1 2.9390 0.9274 -4.7438 46 1 3.3087 1.7506 -3.2096 47 1 5.1687 2.4101 -5.0455 48 1 7.5440 4.1898 -6.5721 49 1 0.8247 -0.6497 -3.1005 50 1 1.3264 0.9811 -2.4745 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570830063.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:18 Heat of formation + Delta-G solvation = -29.300926 kcal Electronic energy + Delta-G solvation = -28459.498697 eV Core-core repulsion = 24487.607474 eV Total energy + Delta-G solvation = -3971.891223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.60271 -39.82713 -38.48677 -37.70609 -35.33085 -33.88610 -32.33611 -31.31806 -30.92114 -29.36969 -29.17442 -26.40757 -25.62124 -25.49478 -24.04081 -21.97316 -20.81499 -20.60421 -19.62157 -19.18889 -18.85269 -17.87802 -17.13800 -16.70522 -16.18770 -16.09123 -15.60367 -15.18140 -15.14949 -14.88468 -14.64482 -14.21934 -13.89607 -13.68406 -13.53164 -13.17093 -12.99363 -12.59330 -12.48905 -12.30137 -12.23696 -12.14235 -12.10763 -11.77179 -11.71320 -11.54809 -11.46953 -11.41481 -11.09307 -11.05749 -10.88196 -10.61225 -10.57760 -10.34142 -10.21806 -9.84769 -9.51015 -9.23641 -9.13347 -8.62755 -8.21417 -7.95792 -6.41251 -3.82050 2.07156 2.53457 2.99037 3.16460 3.26859 3.34051 3.89771 4.00168 4.20334 4.27271 4.33021 4.40430 4.55834 4.60935 4.71731 4.93498 4.95452 5.06284 5.10242 5.13192 5.22209 5.23749 5.26203 5.27969 5.36547 5.43091 5.48995 5.51780 5.56882 5.59138 5.65675 5.71545 5.74318 5.79686 5.85368 5.88712 5.98745 5.99664 6.10373 6.24948 6.27301 6.33936 6.42650 6.64140 6.67800 7.22188 7.36322 7.55670 8.06367 8.11425 8.61849 9.18448 9.54788 10.06400 10.76618 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013666 B = 0.002082 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.375233 B =13446.836674 C =14790.105040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.150 3.850 3 H 0.088 0.912 4 N -0.725 5.725 5 C 0.513 3.487 6 O -0.538 6.538 7 C -0.134 4.134 8 C -0.054 4.054 9 H 0.090 0.910 10 C -0.139 4.139 11 C -0.184 4.184 12 C -0.099 4.099 13 C -0.123 4.123 14 C -0.128 4.128 15 C 0.029 3.971 16 N -0.454 5.454 17 C 0.010 3.990 18 C 0.444 3.556 19 O -0.580 6.580 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 C 0.009 3.991 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.400 0.600 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.054 0.946 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.089 0.911 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.786 -7.592 20.770 26.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.045 3.955 3 H 0.106 0.894 4 N -0.376 5.376 5 C 0.300 3.700 6 O -0.415 6.415 7 C -0.174 4.174 8 C -0.073 4.073 9 H 0.108 0.892 10 C -0.157 4.157 11 C -0.202 4.202 12 C -0.136 4.136 13 C -0.160 4.160 14 C -0.148 4.148 15 C -0.100 4.100 16 N -0.176 5.176 17 C -0.122 4.122 18 C 0.229 3.771 19 O -0.464 6.464 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.120 4.120 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.234 0.766 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.121 0.879 43 H 0.084 0.916 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.072 0.928 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.108 0.892 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.357 -7.784 20.504 26.213 hybrid contribution 0.543 0.924 -0.204 1.091 sum -13.815 -6.860 20.301 25.495 Atomic orbital electron populations 1.22130 0.95149 1.02080 1.02479 1.21031 0.93997 0.97275 0.83209 0.89438 1.46112 1.67712 1.14114 1.09704 1.20698 0.77364 0.87449 0.84533 1.90705 1.49782 1.15978 1.84995 1.21728 1.03203 0.99534 0.92890 1.20824 0.95463 0.97648 0.93356 0.89168 1.23314 0.97099 0.98996 0.96324 1.23245 0.98455 1.02634 0.95852 1.21331 0.94359 0.99975 0.97969 1.22561 0.99624 0.99888 0.93938 1.23371 0.97420 1.01000 0.92964 1.23804 0.95670 1.01665 0.88865 1.68405 1.01910 1.35670 1.11604 1.22459 0.96652 0.92842 1.00255 1.19689 0.87639 0.85394 0.84334 1.90511 1.70076 1.30321 1.55466 1.41883 1.09561 1.19573 1.49157 1.19741 0.83926 1.06088 1.32992 0.87901 1.25269 1.00581 0.95222 0.96974 1.69622 1.37104 1.09112 1.38478 0.85799 0.82072 0.78454 0.78011 1.19236 1.20740 1.20760 1.23965 0.94121 0.99952 0.93998 0.92302 0.91444 0.92446 0.76584 0.88581 0.88856 0.85733 0.86158 0.91390 0.90906 0.90900 0.90746 0.87949 0.91633 0.88908 0.89161 0.92840 0.77500 0.91929 0.89219 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.29 37.16 0.35 -1.08 16 2 C 0.15 1.53 2.41 -67.93 -0.16 1.36 16 3 H 0.09 1.12 7.37 -51.93 -0.38 0.74 16 4 N -0.72 -6.51 5.08 -53.80 -0.27 -6.78 16 5 C 0.51 5.36 7.56 -10.98 -0.08 5.28 16 6 O -0.54 -7.66 14.35 5.56 0.08 -7.58 16 7 C -0.13 -0.99 5.12 -27.88 -0.14 -1.14 16 8 C -0.05 -0.47 2.54 -90.72 -0.23 -0.70 16 9 H 0.09 0.94 8.01 -51.93 -0.42 0.52 16 10 C -0.14 -1.32 9.19 -35.70 -0.33 -1.64 16 11 C -0.18 -1.50 10.78 -35.70 -0.38 -1.89 16 12 C -0.10 -0.69 6.81 -26.82 -0.18 -0.87 16 13 C -0.12 -0.82 6.71 -25.01 -0.17 -0.99 16 14 C -0.13 -1.39 3.49 -89.68 -0.31 -1.70 16 15 C 0.03 0.44 6.31 -2.76 -0.02 0.42 16 16 N -0.45 -7.48 5.95 -239.72 -1.43 -8.91 16 17 C 0.01 0.18 5.31 -4.98 -0.03 0.15 16 18 C 0.44 10.69 7.59 -10.99 -0.08 10.61 16 19 O -0.58 -15.87 15.12 5.55 0.08 -15.79 16 20 N -0.56 -14.58 5.29 -10.96 -0.06 -14.64 16 21 C -0.30 -8.42 9.68 -14.94 -0.14 -8.56 16 22 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 25 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 29 C 0.01 0.11 6.59 -2.77 -0.02 0.09 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.56 7.43 -51.93 -0.39 0.17 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.40 2.62 8.60 -40.82 -0.35 2.27 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.12 1.33 7.31 -52.49 -0.38 0.95 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.41 7.92 -51.93 -0.41 0.00 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 1.06 7.60 -51.93 -0.39 0.67 16 44 H 0.09 1.57 8.09 -51.93 -0.42 1.15 16 45 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 46 H 0.05 0.89 7.69 -51.93 -0.40 0.49 16 47 H 0.39 9.69 7.90 -40.82 -0.32 9.36 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.07 0.77 7.72 -51.93 -0.40 0.37 16 LS Contribution 405.17 15.07 6.11 6.11 Total: -1.00 -33.80 405.17 -10.25 -44.05 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -8.43 Total: 11.59 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.04 Total: -0.19 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -1.03 Total: -54.44 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.16 Total: -23.37 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.80 -10.25 -44.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570830063.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.749 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds