Wall clock time and date at job start Tue Mar 31 2020 18:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47355 * 2 1 4 4 N 1.46501 * 109.46826 * 119.99424 * 2 1 3 5 5 C 1.34775 * 120.00077 * 275.00107 * 4 2 1 6 6 O 1.21278 * 120.00160 * 359.97438 * 5 4 2 7 7 C 1.50707 * 119.99938 * 180.02562 * 5 4 2 8 8 C 1.53000 * 109.46895 * 180.02562 * 7 5 4 9 9 H 1.09002 * 110.34163 * 304.16323 * 8 7 5 10 10 C 1.51104 * 110.38951 * 66.45183 * 8 7 5 11 11 C 1.30527 * 111.10523 * 135.60605 * 10 8 7 12 12 C 1.51104 * 111.10149 * 359.61668 * 11 10 8 13 13 C 1.54632 * 110.48311 * 181.81364 * 8 7 5 14 14 C 1.53000 * 109.47326 * 239.99127 * 2 1 3 15 15 C 1.53942 * 113.73186 * 156.72970 * 14 2 1 16 16 N 1.47965 * 86.17870 * 221.92315 * 15 14 2 17 17 C 1.46895 * 110.99715 * 137.58246 * 16 15 14 18 18 C 1.50702 * 109.46955 * 70.63948 * 17 16 15 19 19 O 1.21287 * 120.00240 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99962 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00409 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00001 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00480 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00120 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00329 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47030 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47231 * 119.99957 * 25 23 21 28 28 H 1.48496 * 109.47667 * 240.00483 * 25 23 21 29 29 C 1.47962 * 90.76153 * 24.69081 * 16 15 14 30 30 H 1.08994 * 109.47602 * 300.00599 * 1 2 3 31 31 H 1.09000 * 109.46889 * 60.00569 * 1 2 3 32 32 H 1.09000 * 109.47355 * 180.02562 * 1 2 3 33 33 H 0.97005 * 120.00195 * 94.99597 * 4 2 1 34 34 H 1.08994 * 109.46984 * 59.99938 * 7 5 4 35 35 H 1.08999 * 109.46960 * 299.99434 * 7 5 4 36 36 H 1.08002 * 124.44506 * 315.33615 * 10 8 7 37 37 H 1.07991 * 124.44863 * 179.73328 * 11 10 8 38 38 H 1.08996 * 110.52393 * 225.02179 * 12 11 10 39 39 H 1.08993 * 110.29475 * 102.72697 * 12 11 10 40 40 H 1.09002 * 111.03487 * 334.53448 * 13 8 7 41 41 H 1.09000 * 111.03782 * 98.43484 * 13 8 7 42 42 H 1.09003 * 112.93863 * 288.43755 * 14 2 1 43 43 H 1.08997 * 113.75975 * 336.23797 * 15 14 2 44 44 H 1.09000 * 113.75490 * 107.60885 * 15 14 2 45 45 H 1.08998 * 109.46937 * 190.63445 * 17 16 15 46 46 H 1.08995 * 109.47467 * 310.64153 * 17 16 15 47 47 H 0.97005 * 120.00256 * 359.97438 * 20 18 17 48 48 H 0.97000 * 120.00136 * 179.97438 * 24 23 21 49 49 H 1.09005 * 113.75483 * 220.99332 * 29 16 15 50 50 H 1.08996 * 113.85822 * 89.64443 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1469 -0.0181 2.3572 6 8 1.8589 1.1588 2.4114 7 6 2.6497 -0.7283 3.5876 8 6 2.7004 0.2548 4.7589 9 1 3.3107 1.1203 4.5010 10 6 1.3050 0.6899 5.1418 11 6 1.1479 0.6784 6.4375 12 6 2.4096 0.2247 7.1344 13 6 3.2568 -0.4390 6.0239 14 6 2.0400 -0.7214 -1.2491 15 6 3.4671 -0.3156 -1.6596 16 7 2.9606 -0.3150 -3.0499 17 6 3.4684 0.8449 -3.7946 18 6 4.9422 0.6686 -4.0551 19 8 5.5135 -0.3253 -3.6590 20 7 5.6256 1.6153 -4.7283 21 6 6.9662 1.4547 -4.9659 22 1 7.4749 0.5697 -4.6131 23 6 7.6708 2.4310 -5.6594 24 7 7.0520 3.5081 -6.0882 25 14 9.4976 2.2125 -5.9824 26 1 9.9524 0.9237 -5.4013 27 1 9.7445 2.2091 -7.4467 28 1 10.2483 3.3304 -5.3564 29 6 1.5824 -0.0741 -2.5686 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2489 -1.6317 1.1529 34 1 3.6490 -1.1201 3.3981 35 1 1.9775 -1.5505 3.8327 36 1 0.5395 0.9772 4.4362 37 1 0.2355 0.9548 6.9448 38 1 2.1756 -0.4978 7.9163 39 1 2.9379 1.0803 7.5548 40 1 3.0827 -1.5144 5.9889 41 1 4.3165 -0.2204 6.1561 42 1 1.8823 -1.7993 -1.2113 43 1 3.7641 0.6696 -1.3001 44 1 4.2152 -1.0841 -1.4652 45 1 2.9390 0.9274 -4.7438 46 1 3.3087 1.7506 -3.2096 47 1 5.1687 2.4101 -5.0455 48 1 7.5440 4.1898 -6.5721 49 1 0.8247 -0.6497 -3.1005 50 1 1.3264 0.9811 -2.4745 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570830063.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:17 Heat of formation + Delta-G solvation = -54.189538 kcal Electronic energy + Delta-G solvation = -28460.577948 eV Core-core repulsion = 24487.607474 eV Total energy + Delta-G solvation = -3972.970474 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.62640 -40.81539 -39.66948 -39.05580 -36.33757 -35.89580 -33.37245 -33.09984 -31.90454 -30.50142 -29.77310 -27.64330 -26.97275 -26.39146 -25.47703 -23.04413 -21.57115 -21.30494 -20.99493 -20.57861 -19.91875 -19.56073 -17.98350 -17.84584 -17.58737 -16.88626 -16.65757 -16.61150 -16.24604 -16.03947 -15.91520 -15.63969 -15.33564 -14.97718 -14.65969 -14.23766 -13.97477 -13.78220 -13.61768 -13.54968 -13.24226 -13.10389 -12.93236 -12.85900 -12.77001 -12.68901 -12.65944 -12.44147 -12.14290 -12.09117 -12.01513 -11.81703 -11.78691 -11.66750 -11.63209 -11.51739 -10.71646 -10.36295 -10.10385 -10.04513 -9.78578 -9.65410 -8.49547 -5.98625 1.34294 1.39299 1.39789 1.53835 1.73041 2.01201 2.22890 2.27024 2.80954 3.16612 3.24309 3.45076 3.63668 3.67322 3.74368 3.98382 4.01822 4.15612 4.17508 4.27217 4.31964 4.37659 4.44886 4.47071 4.50227 4.52586 4.55115 4.58981 4.67889 4.77164 4.78893 4.81522 4.87256 4.98570 4.98842 5.02766 5.11051 5.21021 5.29458 5.32635 5.37452 5.41021 5.42444 5.58962 5.69960 5.88005 6.00844 6.05866 6.56580 6.63673 7.09392 7.35179 7.52186 8.07645 8.68184 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013666 B = 0.002082 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.375233 B =13446.836674 C =14790.105040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.155 3.845 3 H 0.058 0.942 4 N -0.717 5.717 5 C 0.507 3.493 6 O -0.582 6.582 7 C -0.126 4.126 8 C -0.057 4.057 9 H 0.063 0.937 10 C -0.163 4.163 11 C -0.176 4.176 12 C -0.101 4.101 13 C -0.117 4.117 14 C -0.099 4.099 15 C 0.020 3.980 16 N -0.479 5.479 17 C 0.022 3.978 18 C 0.440 3.560 19 O -0.618 6.618 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.269 1.269 28 H -0.270 1.270 29 C 0.016 3.984 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.415 0.585 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.130 0.870 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.123 0.877 43 H 0.048 0.952 44 H 0.069 0.931 45 H 0.110 0.890 46 H 0.070 0.930 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.114 0.886 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.676 -8.824 21.450 27.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.049 3.951 3 H 0.076 0.924 4 N -0.369 5.369 5 C 0.295 3.705 6 O -0.462 6.462 7 C -0.166 4.166 8 C -0.075 4.075 9 H 0.081 0.919 10 C -0.181 4.181 11 C -0.194 4.194 12 C -0.138 4.138 13 C -0.154 4.154 14 C -0.118 4.118 15 C -0.109 4.109 16 N -0.202 5.202 17 C -0.109 4.109 18 C 0.227 3.773 19 O -0.504 6.504 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.215 4.215 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.196 1.196 29 C -0.113 4.113 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.251 0.749 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.122 0.878 37 H 0.147 0.853 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.141 0.859 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.128 0.872 46 H 0.088 0.912 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.132 0.868 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.272 -9.030 21.176 27.626 hybrid contribution 0.777 1.317 -0.388 1.578 sum -14.495 -7.713 20.788 26.490 Atomic orbital electron populations 1.22058 0.93553 1.03202 1.02226 1.20869 0.95047 0.95781 0.83375 0.92351 1.46052 1.67076 1.14750 1.09018 1.21283 0.76590 0.87042 0.85542 1.90688 1.51782 1.18039 1.85722 1.21758 1.04533 0.99449 0.90848 1.20810 0.94617 0.97275 0.94841 0.91912 1.23258 0.97370 1.00824 0.96614 1.23511 0.99343 1.01020 0.95544 1.21397 0.93607 1.00485 0.98351 1.22570 0.99823 1.00592 0.92432 1.23194 0.93616 1.02073 0.92922 1.23739 0.97795 1.00212 0.89114 1.68409 1.04628 1.35138 1.12001 1.22350 0.92246 0.94423 1.01920 1.20752 0.89980 0.84102 0.82455 1.90476 1.71681 1.31702 1.56496 1.41967 1.09135 1.20225 1.49918 1.19692 0.85418 1.06191 1.34931 0.90352 1.26081 1.04766 0.94575 0.96047 1.69682 1.38712 1.09446 1.38338 0.84850 0.76733 0.78295 0.78328 1.19754 1.19462 1.19564 1.24092 0.92016 1.01216 0.93943 0.93831 0.90476 0.90551 0.74877 0.86805 0.86448 0.87763 0.85256 0.89703 0.90804 0.89214 0.90116 0.85873 0.93352 0.91246 0.87202 0.91210 0.77085 0.91274 0.86771 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.29 71.98 0.67 -1.76 16 2 C 0.15 3.01 2.41 44.99 0.11 3.11 16 3 H 0.06 1.52 7.37 -2.39 -0.02 1.50 16 4 N -0.72 -12.17 5.08 -442.53 -2.25 -14.42 16 5 C 0.51 10.58 7.56 87.66 0.66 11.25 16 6 O -0.58 -17.40 14.35 -3.02 -0.04 -17.44 16 7 C -0.13 -1.74 5.12 29.85 0.15 -1.58 16 8 C -0.06 -0.97 2.54 -10.86 -0.03 -0.99 16 9 H 0.06 1.39 8.01 -2.39 -0.02 1.37 16 10 C -0.16 -3.12 9.19 26.26 0.24 -2.88 16 11 C -0.18 -2.75 10.78 26.26 0.28 -2.47 16 12 C -0.10 -1.23 6.81 30.53 0.21 -1.03 16 13 C -0.12 -1.36 6.71 31.71 0.21 -1.14 16 14 C -0.10 -1.97 3.49 -10.15 -0.04 -2.01 16 15 C 0.02 0.63 6.31 86.41 0.55 1.17 16 16 N -0.48 -15.36 5.95 -912.33 -5.43 -20.78 16 17 C 0.02 0.80 5.31 85.56 0.45 1.25 16 18 C 0.44 21.66 7.59 87.66 0.67 22.32 16 19 O -0.62 -34.97 15.12 -3.05 -0.05 -35.02 16 20 N -0.58 -30.45 5.29 -306.99 -1.62 -32.08 16 21 C -0.33 -19.34 9.68 84.04 0.81 -18.53 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.02 -0.82 5.50 84.92 0.47 -0.36 16 24 N -0.92 -50.64 13.05 21.66 0.28 -50.35 16 25 Si 0.99 43.67 29.55 68.60 2.03 45.70 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 28 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 29 C 0.02 0.34 6.59 86.40 0.57 0.91 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 1.09 7.43 -2.39 -0.02 1.07 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.41 4.61 8.60 -92.70 -0.80 3.81 16 34 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.10 2.39 7.31 -2.91 -0.02 2.37 16 37 H 0.13 1.70 8.06 -2.92 -0.02 1.68 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 0.75 7.92 -2.39 -0.02 0.73 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.05 1.63 7.60 -2.39 -0.02 1.61 16 44 H 0.07 2.42 8.09 -2.39 -0.02 2.41 16 45 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 46 H 0.07 2.27 7.69 -2.39 -0.02 2.25 16 47 H 0.40 19.93 7.90 -92.70 -0.73 19.20 16 48 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 49 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 50 H 0.08 1.57 7.72 -2.39 -0.02 1.55 16 Total: -1.00 -76.41 405.17 -1.67 -78.08 By element: Atomic # 1 Polarization: 39.62 SS G_CDS: -0.59 Total: 39.04 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 5.99 Total: 7.27 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -9.01 Total: -117.63 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -0.09 Total: -52.46 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -76.41 -1.67 -78.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570830063.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.894 kcal (2) G-P(sol) polarization free energy of solvation -76.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds