Wall clock time and date at job start Tue Mar 31 2020 19:13:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08999 * 109.46762 * 2 1
4 4 C 1.52999 * 109.47640 * 239.99653 * 2 1 3
5 5 C 1.50703 * 109.46631 * 64.99930 * 4 2 1
6 6 H 1.07992 * 120.00492 * 359.97438 * 5 4 2
7 7 C 1.37879 * 119.99442 * 180.02562 * 5 4 2
8 8 N 1.31512 * 120.00345 * 359.97438 * 7 5 4
9 9 Si 1.86805 * 119.99817 * 179.97438 * 7 5 4
10 10 H 1.48500 * 109.47155 * 0.02562 * 9 7 5
11 11 H 1.48503 * 109.46746 * 119.99827 * 9 7 5
12 12 H 1.48498 * 109.46992 * 240.00003 * 9 7 5
13 13 C 1.53009 * 109.46838 * 119.99547 * 2 1 3
14 14 N 1.46900 * 109.46936 * 296.69788 * 13 2 1
15 15 C 1.46849 * 110.99423 * 164.01518 * 14 13 2
16 16 C 1.53041 * 109.52164 * 185.83861 * 15 14 13
17 17 H 1.08998 * 109.50287 * 180.88047 * 16 15 14
18 18 C 1.50705 * 109.49921 * 60.80248 * 16 15 14
19 19 O 1.20829 * 119.99682 * 239.99691 * 18 16 15
20 20 O 1.34226 * 120.00487 * 60.00456 * 18 16 15
21 21 C 1.53114 * 109.28053 * 300.82417 * 16 15 14
22 22 C 1.53116 * 109.16343 * 57.64980 * 21 16 15
23 23 H 1.09003 * 109.50326 * 62.32860 * 22 21 16
24 24 C 1.50699 * 109.50583 * 182.40725 * 22 21 16
25 25 C 1.39864 * 126.03938 * 59.69206 * 24 22 21
26 26 N 1.30838 * 108.20315 * 179.81697 * 25 24 22
27 27 N 1.40091 * 108.20585 * 0.44043 * 26 25 24
28 28 C 1.46497 * 126.03703 * 179.69366 * 27 26 25
29 29 C 1.34945 * 107.92075 * 359.71735 * 27 26 25
30 30 C 1.46847 * 111.00296 * 288.22326 * 14 13 2
31 31 H 1.09007 * 109.46907 * 174.74654 * 1 2 3
32 32 H 1.08999 * 109.47425 * 294.74435 * 1 2 3
33 33 H 1.09000 * 109.47125 * 54.74861 * 1 2 3
34 34 H 1.08997 * 109.47364 * 185.00099 * 4 2 1
35 35 H 1.08996 * 109.47171 * 305.00231 * 4 2 1
36 36 H 0.96997 * 119.99988 * 180.02562 * 8 7 5
37 37 H 1.08997 * 109.46936 * 56.69897 * 13 2 1
38 38 H 1.09005 * 109.46518 * 176.69946 * 13 2 1
39 39 H 1.09000 * 109.46544 * 305.85385 * 15 14 13
40 40 H 1.08994 * 109.46445 * 65.82760 * 15 14 13
41 41 H 0.96690 * 117.00569 * 179.97438 * 20 18 16
42 42 H 1.09001 * 109.52769 * 177.55999 * 21 16 15
43 43 H 1.09004 * 109.52162 * 297.74589 * 21 16 15
44 44 H 1.08001 * 125.90348 * 0.02562 * 25 24 22
45 45 H 1.08999 * 109.47084 * 270.02393 * 28 27 26
46 46 H 1.09001 * 109.47216 * 30.02914 * 28 27 26
47 47 H 1.09002 * 109.46695 * 150.02707 * 28 27 26
48 48 H 1.08002 * 126.12464 * 180.02562 * 29 27 26
49 49 H 1.09001 * 109.46172 * 294.17891 * 30 14 13
50 50 H 1.09005 * 109.46075 * 54.14747 * 30 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7213 -1.2491
5 6 1.6414 0.0570 -2.4765
6 1 1.0800 0.9740 -2.3757
7 6 1.9926 -0.4024 -3.7282
8 7 2.6758 -1.5194 -3.8510
9 14 1.4978 0.5619 -5.2497
10 1 0.7414 1.7736 -4.8436
11 1 2.7157 0.9666 -5.9969
12 1 0.6436 -0.2875 -6.1180
13 6 2.0400 -0.7212 1.2494
14 7 1.6165 0.0159 2.4474
15 6 1.7470 -0.8159 3.6505
16 6 1.1632 -0.0709 4.8531
17 1 1.2744 -0.6821 5.7488
18 6 -0.2982 0.2070 4.6117
19 8 -0.7019 1.3457 4.5947
20 8 -1.1515 -0.8105 4.4158
21 6 1.9116 1.2516 5.0406
22 6 1.8010 2.0782 3.7564
23 1 0.7542 2.3142 3.5646
24 6 2.5846 3.3560 3.9114
25 6 3.9556 3.4543 4.1703
26 7 4.2698 4.7229 4.2327
27 7 3.1050 5.4730 4.0251
28 6 3.0108 6.9350 4.0209
29 6 2.0852 4.6111 3.8304
30 6 2.3663 1.2710 2.5856
31 1 -0.3633 -1.0234 -0.0941
32 1 -0.3634 0.4301 0.9333
33 1 -0.3633 0.5931 -0.8392
34 1 3.1264 -0.7995 -1.2054
35 1 1.6055 -1.7198 -1.2951
36 1 2.9231 -1.8423 -4.7316
37 1 1.6291 -1.7303 1.2795
38 1 3.1284 -0.7727 1.2203
39 1 1.2068 -1.7514 3.5057
40 1 2.8003 -1.0293 3.8320
41 1 -2.0791 -0.5828 4.2654
42 1 1.4707 1.8055 5.8694
43 1 2.9612 1.0491 5.2541
44 1 4.6377 2.6262 4.2938
45 1 2.8019 7.2885 5.0305
46 1 3.9536 7.3588 3.6752
47 1 2.2066 7.2452 3.3536
48 1 1.0550 4.8755 3.6429
49 1 3.4168 1.0477 2.7721
50 1 2.2759 1.8511 1.6672
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001603142868.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:13:43
Heat of formation + Delta-G solvation = -24.787891 kcal
Electronic energy + Delta-G solvation = -30135.058836 eV
Core-core repulsion = 26163.363312 eV
Total energy + Delta-G solvation = -3971.695523 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.40369 -40.54094 -38.48841 -36.20827 -35.44645 -33.79816 -32.87175 -31.98825
-31.44508 -29.22419 -26.92783 -26.51374 -25.98551 -24.70643 -23.53708 -22.70581
-21.62747 -21.21088 -20.17475 -19.33887 -18.78212 -17.88291 -17.05488 -16.35212
-16.03962 -15.77773 -15.53963 -15.32396 -14.86651 -14.46891 -14.36079 -14.22855
-13.78993 -13.62244 -13.40545 -13.14915 -12.95489 -12.82680 -12.78571 -12.43076
-12.16539 -12.09000 -12.03527 -11.61382 -11.42467 -11.26004 -11.18593 -10.83495
-10.72871 -10.63821 -10.59518 -10.46984 -10.24909 -10.18844 -9.98662 -9.53460
-9.46568 -9.08064 -8.91292 -8.37064 -8.29723 -8.00870 -5.94679 -3.95170
1.84698 2.34376 2.45236 2.76988 3.11025 3.33874 3.41427 3.45732
4.08390 4.37417 4.51456 4.56352 4.73332 4.80725 4.91633 4.95201
5.04652 5.16960 5.19902 5.32222 5.39958 5.41630 5.49100 5.56724
5.60844 5.66806 5.70530 5.75392 5.79980 5.92791 6.02013 6.10319
6.20561 6.32389 6.40393 6.45287 6.57649 6.60669 6.75116 6.77075
6.93936 7.06430 7.19547 7.25106 7.39487 7.46177 7.64677 7.73770
7.90158 8.00827 8.06252 8.50953 9.11558 9.68130 11.16950
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.009119 B = 0.003497 C = 0.002803
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3069.909819 B = 8004.781434 C = 9985.831547
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C -0.078 4.078
3 H 0.054 0.946
4 C 0.027 3.973
5 C -0.509 4.509
6 H 0.056 0.944
7 C 0.055 3.945
8 N -0.897 5.897
9 Si 0.888 3.112
10 H -0.273 1.273
11 H -0.285 1.285
12 H -0.285 1.285
13 C 0.064 3.936
14 N -0.538 5.538
15 C 0.061 3.939
16 C -0.077 4.077
17 H 0.108 0.892
18 C 0.501 3.499
19 O -0.514 6.514
20 O -0.516 6.516
21 C -0.094 4.094
22 C -0.015 4.015
23 H 0.103 0.897
24 C -0.220 4.220
25 C 0.054 3.946
26 N -0.302 5.302
27 N -0.381 5.381
28 C 0.104 3.896
29 C 0.061 3.939
30 C 0.063 3.937
31 H 0.038 0.962
32 H 0.042 0.958
33 H 0.049 0.951
34 H 0.012 0.988
35 H 0.015 0.985
36 H 0.258 0.742
37 H 0.069 0.931
38 H 0.031 0.969
39 H 0.086 0.914
40 H 0.046 0.954
41 H 0.407 0.593
42 H 0.071 0.929
43 H 0.073 0.927
44 H 0.178 0.822
45 H 0.071 0.929
46 H 0.087 0.913
47 H 0.086 0.914
48 H 0.173 0.827
49 H 0.031 0.969
50 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.678 7.922 22.253 23.773
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C -0.097 4.097
3 H 0.073 0.927
4 C -0.010 4.010
5 C -0.548 4.548
6 H 0.074 0.926
7 C -0.145 4.145
8 N -0.537 5.537
9 Si 0.716 3.284
10 H -0.198 1.198
11 H -0.212 1.212
12 H -0.211 1.211
13 C -0.063 4.063
14 N -0.262 5.262
15 C -0.068 4.068
16 C -0.097 4.097
17 H 0.126 0.874
18 C 0.343 3.657
19 O -0.402 6.402
20 O -0.327 6.327
21 C -0.132 4.132
22 C -0.035 4.035
23 H 0.121 0.879
24 C -0.232 4.232
25 C -0.132 4.132
26 N -0.123 5.123
27 N -0.163 5.163
28 C -0.038 4.038
29 C -0.085 4.085
30 C -0.065 4.065
31 H 0.058 0.942
32 H 0.061 0.939
33 H 0.068 0.932
34 H 0.030 0.970
35 H 0.034 0.966
36 H 0.068 0.932
37 H 0.088 0.912
38 H 0.050 0.950
39 H 0.105 0.895
40 H 0.064 0.936
41 H 0.265 0.735
42 H 0.089 0.911
43 H 0.092 0.908
44 H 0.195 0.805
45 H 0.090 0.910
46 H 0.106 0.894
47 H 0.105 0.895
48 H 0.190 0.810
49 H 0.050 0.950
50 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -1.861 9.165 22.299 24.181
hybrid contribution -0.605 -0.161 -1.151 1.310
sum -2.466 9.005 21.148 23.117
Atomic orbital electron populations
1.21547 0.95855 1.00502 0.99814 1.21186 0.95875 0.99027 0.93640
0.92717 1.19131 0.95871 0.95512 0.90512 1.21275 1.34312 1.08216
0.90979 0.92598 1.25010 0.95395 0.95085 0.99044 1.69972 1.39285
1.21281 1.23194 0.86602 0.78235 0.80171 0.83403 1.19784 1.21156
1.21097 1.22287 0.97510 0.97249 0.89284 1.61942 1.57052 1.05035
1.02183 1.22064 0.99423 0.96309 0.88993 1.21161 0.87935 0.99926
1.00671 0.87368 1.23088 0.89002 0.82391 0.71179 1.90630 1.78956
1.23304 1.47359 1.84506 1.23897 1.40872 1.83422 1.21519 0.99583
0.93255 0.98819 1.19676 1.00505 0.89826 0.93451 0.87850 1.19965
0.94081 0.94501 1.14614 1.23715 0.95542 0.94312 0.99648 1.77321
1.06499 1.04121 1.24359 1.48411 1.05642 1.06469 1.55806 1.21811
1.04274 0.74752 1.02969 1.22369 0.94590 0.89856 1.01677 1.22186
0.94466 0.90872 0.98978 0.94242 0.93901 0.93217 0.96991 0.96619
0.93209 0.91250 0.95044 0.89523 0.93573 0.73500 0.91073 0.90825
0.80461 0.91013 0.89448 0.89531 0.81021 0.95046 0.89945
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.35 8.85 37.16 0.33 -2.02 16
2 C -0.08 -1.60 2.34 -90.62 -0.21 -1.81 16
3 H 0.05 1.16 6.54 -51.93 -0.34 0.82 16
4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16
5 C -0.51 -14.37 8.47 -34.44 -0.29 -14.66 16
6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16
7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16
8 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16
9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16
10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16
11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16
13 C 0.06 1.07 4.38 -3.82 -0.02 1.05 16
14 N -0.54 -7.56 3.51 -234.66 -0.82 -8.38 16
15 C 0.06 0.68 4.82 -3.83 -0.02 0.66 16
16 C -0.08 -0.76 3.13 -91.69 -0.29 -1.04 16
17 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16
18 C 0.50 5.80 6.97 36.01 0.25 6.05 16
19 O -0.51 -7.18 14.57 -18.75 -0.27 -7.46 16
20 O -0.52 -5.14 13.31 -39.25 -0.52 -5.66 16
21 C -0.09 -0.94 4.34 -26.61 -0.12 -1.06 16
22 C -0.01 -0.18 2.39 -91.69 -0.22 -0.40 16
23 H 0.10 1.47 5.73 -51.93 -0.30 1.17 16
24 C -0.22 -2.65 4.80 -105.05 -0.50 -3.16 16
25 C 0.05 0.66 11.39 -17.37 -0.20 0.46 16
26 N -0.30 -4.03 12.58 30.62 0.39 -3.65 16
27 N -0.38 -4.32 4.01 -68.16 -0.27 -4.59 16
28 C 0.10 0.72 11.47 59.85 0.69 1.41 16
29 C 0.06 0.69 11.38 -17.22 -0.20 0.49 16
30 C 0.06 0.86 4.49 -3.83 -0.02 0.84 16
31 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16
32 H 0.04 0.77 7.55 -51.93 -0.39 0.38 16
33 H 0.05 1.04 7.11 -51.93 -0.37 0.67 16
34 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16
35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16
37 H 0.07 1.16 7.87 -51.93 -0.41 0.75 16
38 H 0.03 0.54 8.06 -51.93 -0.42 0.12 16
39 H 0.09 0.97 7.91 -51.93 -0.41 0.55 16
40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
41 H 0.41 2.62 9.10 45.56 0.41 3.03 16
42 H 0.07 0.73 8.04 -51.93 -0.42 0.31 16
43 H 0.07 0.64 7.96 -51.93 -0.41 0.23 16
44 H 0.18 1.77 8.06 -52.49 -0.42 1.35 16
45 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16
46 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16
47 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16
48 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16
49 H 0.03 0.41 8.00 -51.93 -0.42 0.00 16
50 H 0.08 1.32 6.44 -51.93 -0.33 0.99 16
LS Contribution 398.20 15.07 6.00 6.00
Total: -1.00 -34.84 398.20 -8.36 -43.20
By element:
Atomic # 1 Polarization: 8.70 SS G_CDS: -7.54 Total: 1.16 kcal
Atomic # 6 Polarization: -10.10 SS G_CDS: -1.03 Total: -11.13 kcal
Atomic # 7 Polarization: -43.02 SS G_CDS: 0.02 Total: -43.00 kcal
Atomic # 8 Polarization: -12.32 SS G_CDS: -0.80 Total: -13.12 kcal
Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal
Total LS contribution 6.00 Total: 6.00 kcal
Total: -34.84 -8.36 -43.20 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001603142868.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.408 kcal
(2) G-P(sol) polarization free energy of solvation -34.838 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.430 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.196 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.788 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds