Wall clock time and date at job start Tue Mar 31 2020 19:13:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08999 * 109.46762 * 2 1
4 4 C 1.52999 * 109.47640 * 239.99653 * 2 1 3
5 5 C 1.50703 * 109.46631 * 64.99930 * 4 2 1
6 6 H 1.07992 * 120.00492 * 359.97438 * 5 4 2
7 7 C 1.37879 * 119.99442 * 180.02562 * 5 4 2
8 8 N 1.31512 * 120.00345 * 359.97438 * 7 5 4
9 9 Si 1.86805 * 119.99817 * 179.97438 * 7 5 4
10 10 H 1.48500 * 109.47155 * 0.02562 * 9 7 5
11 11 H 1.48503 * 109.46746 * 119.99827 * 9 7 5
12 12 H 1.48498 * 109.46992 * 240.00003 * 9 7 5
13 13 C 1.53009 * 109.46838 * 119.99547 * 2 1 3
14 14 N 1.46900 * 109.46936 * 296.69788 * 13 2 1
15 15 C 1.46849 * 110.99423 * 164.01518 * 14 13 2
16 16 C 1.53041 * 109.52164 * 185.83861 * 15 14 13
17 17 H 1.08998 * 109.50287 * 180.88047 * 16 15 14
18 18 C 1.50705 * 109.49921 * 60.80248 * 16 15 14
19 19 O 1.20829 * 119.99682 * 239.99691 * 18 16 15
20 20 O 1.34226 * 120.00487 * 60.00456 * 18 16 15
21 21 C 1.53114 * 109.28053 * 300.82417 * 16 15 14
22 22 C 1.53116 * 109.16343 * 57.64980 * 21 16 15
23 23 H 1.09003 * 109.50326 * 62.32860 * 22 21 16
24 24 C 1.50699 * 109.50583 * 182.40725 * 22 21 16
25 25 C 1.39864 * 126.03938 * 59.69206 * 24 22 21
26 26 N 1.30838 * 108.20315 * 179.81697 * 25 24 22
27 27 N 1.40091 * 108.20585 * 0.44043 * 26 25 24
28 28 C 1.46497 * 126.03703 * 179.69366 * 27 26 25
29 29 C 1.34945 * 107.92075 * 359.71735 * 27 26 25
30 30 C 1.46847 * 111.00296 * 288.22326 * 14 13 2
31 31 H 1.09007 * 109.46907 * 174.74654 * 1 2 3
32 32 H 1.08999 * 109.47425 * 294.74435 * 1 2 3
33 33 H 1.09000 * 109.47125 * 54.74861 * 1 2 3
34 34 H 1.08997 * 109.47364 * 185.00099 * 4 2 1
35 35 H 1.08996 * 109.47171 * 305.00231 * 4 2 1
36 36 H 0.96997 * 119.99988 * 180.02562 * 8 7 5
37 37 H 1.08997 * 109.46936 * 56.69897 * 13 2 1
38 38 H 1.09005 * 109.46518 * 176.69946 * 13 2 1
39 39 H 1.09000 * 109.46544 * 305.85385 * 15 14 13
40 40 H 1.08994 * 109.46445 * 65.82760 * 15 14 13
41 41 H 0.96690 * 117.00569 * 179.97438 * 20 18 16
42 42 H 1.09001 * 109.52769 * 177.55999 * 21 16 15
43 43 H 1.09004 * 109.52162 * 297.74589 * 21 16 15
44 44 H 1.08001 * 125.90348 * 0.02562 * 25 24 22
45 45 H 1.08999 * 109.47084 * 270.02393 * 28 27 26
46 46 H 1.09001 * 109.47216 * 30.02914 * 28 27 26
47 47 H 1.09002 * 109.46695 * 150.02707 * 28 27 26
48 48 H 1.08002 * 126.12464 * 180.02562 * 29 27 26
49 49 H 1.09001 * 109.46172 * 294.17891 * 30 14 13
50 50 H 1.09005 * 109.46075 * 54.14747 * 30 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7213 -1.2491
5 6 1.6414 0.0570 -2.4765
6 1 1.0800 0.9740 -2.3757
7 6 1.9926 -0.4024 -3.7282
8 7 2.6758 -1.5194 -3.8510
9 14 1.4978 0.5619 -5.2497
10 1 0.7414 1.7736 -4.8436
11 1 2.7157 0.9666 -5.9969
12 1 0.6436 -0.2875 -6.1180
13 6 2.0400 -0.7212 1.2494
14 7 1.6165 0.0159 2.4474
15 6 1.7470 -0.8159 3.6505
16 6 1.1632 -0.0709 4.8531
17 1 1.2744 -0.6821 5.7488
18 6 -0.2982 0.2070 4.6117
19 8 -0.7019 1.3457 4.5947
20 8 -1.1515 -0.8105 4.4158
21 6 1.9116 1.2516 5.0406
22 6 1.8010 2.0782 3.7564
23 1 0.7542 2.3142 3.5646
24 6 2.5846 3.3560 3.9114
25 6 3.9556 3.4543 4.1703
26 7 4.2698 4.7229 4.2327
27 7 3.1050 5.4730 4.0251
28 6 3.0108 6.9350 4.0209
29 6 2.0852 4.6111 3.8304
30 6 2.3663 1.2710 2.5856
31 1 -0.3633 -1.0234 -0.0941
32 1 -0.3634 0.4301 0.9333
33 1 -0.3633 0.5931 -0.8392
34 1 3.1264 -0.7995 -1.2054
35 1 1.6055 -1.7198 -1.2951
36 1 2.9231 -1.8423 -4.7316
37 1 1.6291 -1.7303 1.2795
38 1 3.1284 -0.7727 1.2203
39 1 1.2068 -1.7514 3.5057
40 1 2.8003 -1.0293 3.8320
41 1 -2.0791 -0.5828 4.2654
42 1 1.4707 1.8055 5.8694
43 1 2.9612 1.0491 5.2541
44 1 4.6377 2.6262 4.2938
45 1 2.8019 7.2885 5.0305
46 1 3.9536 7.3588 3.6752
47 1 2.2066 7.2452 3.3536
48 1 1.0550 4.8755 3.6429
49 1 3.4168 1.0477 2.7721
50 1 2.2759 1.8511 1.6672
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001603142868.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:13:42
Heat of formation + Delta-G solvation = -47.118882 kcal
Electronic energy + Delta-G solvation = -30136.027180 eV
Core-core repulsion = 26163.363312 eV
Total energy + Delta-G solvation = -3972.663868 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-42.27749 -41.42013 -39.54787 -37.33314 -36.69127 -35.00868 -34.28384 -33.14205
-32.72928 -30.08180 -28.90586 -27.41190 -27.22089 -25.72936 -25.09831 -23.79612
-22.91372 -22.06044 -21.05321 -20.44105 -20.19090 -18.75331 -18.51340 -17.82025
-16.97103 -16.80795 -16.57912 -16.33780 -16.19385 -16.01498 -15.37504 -15.23076
-14.91430 -14.81273 -14.58471 -14.28822 -14.06947 -13.86347 -13.69431 -13.49334
-13.47785 -13.23117 -13.10204 -12.88781 -12.81054 -12.76238 -12.51242 -12.47483
-12.22975 -12.08590 -11.99861 -11.63370 -11.51133 -11.42124 -11.26854 -11.01326
-10.90519 -10.81345 -10.52069 -10.32937 -9.25271 -9.14037 -8.16668 -6.24988
0.98267 1.38710 1.39335 1.48784 1.52099 1.72662 1.86776 2.36609
2.42135 3.00719 3.16775 3.58909 3.80085 3.89320 4.01879 4.06584
4.16270 4.33137 4.36730 4.41260 4.44055 4.47068 4.54074 4.58890
4.64929 4.68357 4.74288 4.78678 4.83216 4.84571 4.89032 4.95269
4.99737 5.07209 5.08504 5.19443 5.32268 5.35486 5.50419 5.50735
5.53999 5.58962 5.75562 5.83809 5.91904 5.92626 6.14564 6.17355
6.28635 6.35373 6.76967 6.90981 7.23277 7.42980 8.95442
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.009119 B = 0.003497 C = 0.002803
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3069.909819 B = 8004.781434 C = 9985.831547
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C -0.069 4.069
3 H 0.044 0.956
4 C 0.035 3.965
5 C -0.527 4.527
6 H 0.056 0.944
7 C 0.000 4.000
8 N -0.933 5.933
9 Si 0.957 3.043
10 H -0.265 1.265
11 H -0.280 1.280
12 H -0.278 1.278
13 C 0.076 3.924
14 N -0.542 5.542
15 C 0.059 3.941
16 C -0.072 4.072
17 H 0.144 0.856
18 C 0.498 3.502
19 O -0.543 6.543
20 O -0.516 6.516
21 C -0.090 4.090
22 C -0.002 4.002
23 H 0.083 0.917
24 C -0.235 4.235
25 C 0.048 3.952
26 N -0.334 5.334
27 N -0.383 5.383
28 C 0.094 3.906
29 C 0.056 3.944
30 C 0.068 3.932
31 H 0.037 0.963
32 H 0.060 0.940
33 H 0.030 0.970
34 H -0.015 1.015
35 H -0.007 1.007
36 H 0.262 0.738
37 H 0.073 0.927
38 H 0.026 0.974
39 H 0.091 0.909
40 H 0.063 0.937
41 H 0.421 0.579
42 H 0.071 0.929
43 H 0.091 0.909
44 H 0.193 0.807
45 H 0.087 0.913
46 H 0.088 0.912
47 H 0.108 0.892
48 H 0.191 0.809
49 H 0.037 0.963
50 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.302 8.450 23.544 25.231
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.088 4.088
3 H 0.062 0.938
4 C -0.003 4.003
5 C -0.565 4.565
6 H 0.074 0.926
7 C -0.197 4.197
8 N -0.574 5.574
9 Si 0.782 3.218
10 H -0.189 1.189
11 H -0.206 1.206
12 H -0.203 1.203
13 C -0.051 4.051
14 N -0.267 5.267
15 C -0.068 4.068
16 C -0.092 4.092
17 H 0.162 0.838
18 C 0.342 3.658
19 O -0.434 6.434
20 O -0.328 6.328
21 C -0.127 4.127
22 C -0.022 4.022
23 H 0.101 0.899
24 C -0.247 4.247
25 C -0.137 4.137
26 N -0.157 5.157
27 N -0.166 5.166
28 C -0.046 4.046
29 C -0.091 4.091
30 C -0.060 4.060
31 H 0.056 0.944
32 H 0.079 0.921
33 H 0.050 0.950
34 H 0.004 0.996
35 H 0.011 0.989
36 H 0.070 0.930
37 H 0.091 0.909
38 H 0.044 0.956
39 H 0.109 0.891
40 H 0.081 0.919
41 H 0.281 0.719
42 H 0.089 0.911
43 H 0.109 0.891
44 H 0.210 0.790
45 H 0.106 0.894
46 H 0.107 0.893
47 H 0.126 0.874
48 H 0.208 0.792
49 H 0.055 0.945
50 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -2.497 9.699 23.608 25.645
hybrid contribution -0.442 -0.307 -1.543 1.634
sum -2.939 9.392 22.065 24.160
Atomic orbital electron populations
1.21401 0.94955 1.00116 0.99898 1.20975 0.96427 0.98101 0.93323
0.93758 1.19002 0.94042 0.94693 0.92557 1.21650 1.34203 1.08409
0.92246 0.92626 1.25891 0.95318 0.96074 1.02433 1.70093 1.40348
1.22851 1.24156 0.85520 0.78086 0.78928 0.79273 1.18894 1.20561
1.20337 1.21973 0.96970 0.97051 0.89115 1.61849 1.57049 1.05315
1.02457 1.22158 1.00736 0.96041 0.87910 1.21243 0.86572 1.00063
1.01283 0.83845 1.23470 0.89824 0.82106 0.70435 1.90628 1.79599
1.24432 1.48714 1.84480 1.24997 1.40398 1.82970 1.21502 1.00740
0.93034 0.97448 1.19479 0.98972 0.89977 0.93749 0.89869 1.20063
0.94233 0.94837 1.15529 1.23994 0.95880 0.94519 0.99290 1.77254
1.07926 1.04837 1.25632 1.48753 1.05011 1.07828 1.54971 1.22143
1.05259 0.72585 1.04617 1.22745 0.95446 0.89931 1.00939 1.22112
0.94943 0.90554 0.98420 0.94400 0.92099 0.95047 0.99616 0.98853
0.92951 0.90884 0.95606 0.89110 0.91881 0.71885 0.91054 0.89059
0.78977 0.89408 0.89303 0.87382 0.79228 0.94466 0.92947
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -4.18 8.85 71.98 0.64 -3.54 16
2 C -0.07 -2.89 2.34 -10.79 -0.03 -2.91 16
3 H 0.04 1.93 6.54 -2.39 -0.02 1.92 16
4 C 0.03 1.83 4.45 29.85 0.13 1.97 16
5 C -0.53 -30.33 8.47 25.60 0.22 -30.11 16
6 H 0.06 3.13 7.06 -2.91 -0.02 3.11 16
7 C 0.00 0.00 5.46 84.66 0.46 0.47 16
8 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16
9 Si 0.96 45.20 29.54 68.60 2.03 47.22 16
10 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16
11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16
12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16
13 C 0.08 2.56 4.38 86.31 0.38 2.93 16
14 N -0.54 -14.63 3.51 -896.33 -3.15 -17.78 16
15 C 0.06 1.17 4.82 86.33 0.42 1.59 16
16 C -0.07 -1.21 3.13 -11.49 -0.04 -1.24 16
17 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16
18 C 0.50 10.51 6.97 71.24 0.50 11.00 16
19 O -0.54 -14.49 14.57 21.96 0.32 -14.17 16
20 O -0.52 -9.14 13.31 -51.38 -0.68 -9.82 16
21 C -0.09 -1.59 4.34 30.67 0.13 -1.46 16
22 C 0.00 -0.04 2.39 -11.49 -0.03 -0.07 16
23 H 0.08 2.31 5.73 -2.39 -0.01 2.30 16
24 C -0.23 -5.49 4.80 -20.14 -0.10 -5.59 16
25 C 0.05 1.15 11.39 85.23 0.97 2.12 16
26 N -0.33 -8.76 12.58 -57.03 -0.72 -9.47 16
27 N -0.38 -8.33 4.01 -369.57 -1.48 -9.82 16
28 C 0.09 1.17 11.47 127.77 1.47 2.64 16
29 C 0.06 1.22 11.38 83.54 0.95 2.17 16
30 C 0.07 1.82 4.49 86.33 0.39 2.20 16
31 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16
32 H 0.06 2.15 7.55 -2.39 -0.02 2.14 16
33 H 0.03 1.31 7.11 -2.39 -0.02 1.30 16
34 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16
35 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16
36 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16
37 H 0.07 2.39 7.87 -2.39 -0.02 2.37 16
38 H 0.03 0.89 8.06 -2.38 -0.02 0.87 16
39 H 0.09 1.77 7.91 -2.39 -0.02 1.75 16
40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16
41 H 0.42 4.64 9.10 -74.06 -0.67 3.97 16
42 H 0.07 1.31 8.04 -2.39 -0.02 1.29 16
43 H 0.09 1.32 7.96 -2.39 -0.02 1.30 16
44 H 0.19 3.63 8.06 -2.91 -0.02 3.61 16
45 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16
46 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16
47 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16
48 H 0.19 3.25 8.06 -2.91 -0.02 3.22 16
49 H 0.04 0.95 8.00 -2.39 -0.02 0.93 16
50 H 0.05 1.71 6.44 -2.38 -0.02 1.70 16
Total: -1.00 -76.20 398.20 3.32 -72.87
By element:
Atomic # 1 Polarization: 15.64 SS G_CDS: 0.26 Total: 15.89 kcal
Atomic # 6 Polarization: -24.30 SS G_CDS: 6.46 Total: -17.84 kcal
Atomic # 7 Polarization: -89.09 SS G_CDS: -5.06 Total: -94.16 kcal
Atomic # 8 Polarization: -23.63 SS G_CDS: -0.36 Total: -24.00 kcal
Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal
Total: -76.20 3.32 -72.87 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001603142868.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.754 kcal
(2) G-P(sol) polarization free energy of solvation -76.196 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.441 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.873 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.119 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds