Wall clock time and date at job start Tue Mar 31 2020 19:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47633 * 2 1 4 4 C 1.50702 * 109.47309 * 240.00346 * 2 1 3 5 5 H 1.08003 * 120.00106 * 240.00168 * 4 2 1 6 6 C 1.37876 * 120.00233 * 59.99490 * 4 2 1 7 7 N 1.31516 * 119.99837 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00309 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47408 * 59.99842 * 8 6 4 10 10 H 1.48494 * 109.47262 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46687 * 300.00139 * 8 6 4 12 12 C 1.50700 * 109.47200 * 120.00134 * 2 1 3 13 13 O 1.21273 * 120.00006 * 34.76702 * 12 2 1 14 14 N 1.34781 * 119.99884 * 214.76412 * 12 2 1 15 15 C 1.47423 * 125.65230 * 4.87898 * 14 12 2 16 16 C 1.55123 * 104.72418 * 155.81781 * 15 14 12 17 17 C 1.55155 * 101.48627 * 37.29682 * 16 15 14 18 18 C 1.53008 * 110.71696 * 82.69589 * 17 16 15 19 19 C 1.52994 * 110.72399 * 205.96924 * 17 16 15 20 20 N 1.46501 * 109.47155 * 293.52446 * 19 17 16 21 21 C 1.34777 * 120.00480 * 180.02562 * 20 19 17 22 22 O 1.21288 * 119.99729 * 359.97438 * 21 20 19 23 23 C 1.50696 * 120.00588 * 180.02562 * 21 20 19 24 24 H 1.09008 * 109.46758 * 59.99768 * 23 21 20 25 25 C 1.53003 * 109.46841 * 300.00148 * 23 21 20 26 26 C 1.53001 * 109.47596 * 179.97438 * 23 21 20 27 27 C 1.47196 * 109.47333 * 184.99852 * 26 23 21 28 28 N 9.99110 * 150.79698 * 200.10363 * 15 1 2 29 29 C 1.47021 * 125.64570 * 185.19514 * 14 12 2 30 30 H 1.08997 * 109.46859 * 54.70736 * 1 2 3 31 31 H 1.08995 * 109.47126 * 294.70946 * 1 2 3 32 32 H 1.08996 * 109.46968 * 174.70805 * 1 2 3 33 33 H 0.96993 * 119.99830 * 179.97438 * 7 6 4 34 34 H 1.08994 * 110.37128 * 274.75016 * 15 14 12 35 35 H 1.09005 * 110.36314 * 37.06793 * 15 14 12 36 36 H 1.09001 * 111.19667 * 279.19585 * 16 15 14 37 37 H 1.08995 * 110.93940 * 155.29144 * 16 15 14 38 38 H 1.08996 * 109.47092 * 306.47724 * 18 17 16 39 39 H 1.09000 * 109.46849 * 66.47758 * 18 17 16 40 40 H 1.09003 * 109.47114 * 186.48008 * 18 17 16 41 41 H 1.09001 * 109.47103 * 53.51987 * 19 17 16 42 42 H 1.09000 * 109.47116 * 173.52527 * 19 17 16 43 43 H 0.97007 * 119.99724 * 359.97438 * 20 19 17 44 44 H 1.08996 * 109.46757 * 299.99464 * 25 23 21 45 45 H 1.08998 * 109.47425 * 60.00101 * 25 23 21 46 46 H 1.09009 * 109.46670 * 180.02562 * 25 23 21 47 47 H 1.08995 * 109.46998 * 305.00639 * 26 23 21 48 48 H 1.09005 * 109.46611 * 64.99597 * 26 23 21 49 49 H 1.09005 * 109.88028 * 300.43195 * 29 14 12 50 50 H 1.08993 * 109.88699 * 61.60077 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8260 -2.5201 -4.0079 10 1 1.8269 -0.4198 -5.2205 11 1 3.8064 -1.1206 -4.0082 12 6 2.0323 -0.7104 1.2304 13 8 1.4210 -1.6587 1.6751 14 7 3.1610 -0.2919 1.8366 15 6 3.9435 0.9014 1.4664 16 6 4.7078 1.2886 2.7595 17 6 5.0554 -0.1067 3.3424 18 6 6.3152 -0.6706 2.6819 19 6 5.2258 -0.0319 4.8609 20 7 6.4047 0.7767 5.1809 21 6 6.7532 0.9810 6.4667 22 8 6.0903 0.4958 7.3590 23 6 7.9656 1.8133 6.7959 24 1 7.8357 2.8187 6.3952 25 6 9.2080 1.1728 6.1736 26 6 8.1360 1.8880 8.3145 27 6 9.2471 2.7972 8.6394 28 7 10.1051 3.4983 8.8901 29 6 3.8194 -0.9535 2.9725 30 1 -0.3633 0.5937 -0.8388 31 1 -0.3633 0.4296 0.9335 32 1 -0.3633 -1.0233 -0.0948 33 1 0.7094 1.1618 -3.4843 34 1 4.6438 0.6626 0.6661 35 1 3.2797 1.7107 1.1618 36 1 4.0690 1.8489 3.4421 37 1 5.6120 1.8500 2.5243 38 1 6.1930 -0.6610 1.5989 39 1 7.1743 -0.0583 2.9562 40 1 6.4757 -1.6943 3.0204 41 1 4.3408 0.4251 5.3037 42 1 5.3549 -1.0372 5.2620 43 1 6.9351 1.1645 4.4672 44 1 9.3377 0.1675 6.5742 45 1 9.0864 1.1200 5.0917 46 1 10.0850 1.7746 6.4120 47 1 7.2168 2.2618 8.7653 48 1 8.3539 0.8939 8.7049 49 1 3.1360 -1.0016 3.8204 50 1 4.1304 -1.9583 2.6869 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645984728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:57 Heat of formation + Delta-G solvation = -64.629030 kcal Electronic energy + Delta-G solvation = -29031.906306 eV Core-core repulsion = 25058.483141 eV Total energy + Delta-G solvation = -3973.423165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.64660 -39.67678 -37.79696 -37.26571 -35.03440 -34.75603 -33.79119 -32.25327 -30.36850 -29.47274 -28.72464 -27.31809 -26.34814 -25.19397 -24.07035 -23.02512 -21.77550 -20.48920 -19.32510 -18.40795 -18.35326 -17.08165 -16.57540 -16.34759 -16.18283 -16.11429 -15.51382 -15.11330 -14.85176 -14.45548 -14.28952 -14.25036 -13.98590 -13.60884 -13.59530 -13.21124 -13.08077 -12.84887 -12.73756 -12.55719 -12.43328 -12.36826 -12.27102 -11.95644 -11.71007 -11.67394 -11.60446 -11.54207 -11.06129 -11.00882 -10.86551 -10.80322 -10.74626 -10.52883 -10.27425 -10.17091 -10.12536 -9.39165 -9.06518 -8.68138 -8.39652 -8.04442 -6.13685 -4.20626 2.21130 2.24001 2.35452 2.76615 3.25175 3.30211 3.32544 3.54584 3.64475 3.73564 4.05569 4.27101 4.29691 4.32931 4.37153 4.48715 4.56264 4.70062 4.94833 5.04394 5.07829 5.13950 5.17226 5.18360 5.35399 5.37119 5.43539 5.46964 5.53335 5.57526 5.74211 5.76449 5.85596 5.90696 5.99585 6.08320 6.10633 6.15546 6.29316 6.77037 6.89899 6.96230 7.08875 7.10337 7.11222 7.53214 7.72751 7.81871 7.91404 8.13320 8.30344 8.78751 9.16844 9.44284 10.92882 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022952 B = 0.002105 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.644644 B =13300.095455 C =13734.000911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.036 3.964 3 H 0.044 0.956 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.543 3.457 13 O -0.560 6.560 14 N -0.625 5.625 15 C 0.110 3.890 16 C -0.126 4.126 17 C -0.088 4.088 18 C -0.138 4.138 19 C 0.136 3.864 20 N -0.721 5.721 21 C 0.520 3.480 22 O -0.537 6.537 23 C -0.107 4.107 24 H 0.108 0.892 25 C -0.150 4.150 26 C -0.010 4.010 27 C 0.208 3.792 28 N -0.436 5.436 29 C 0.121 3.879 30 H 0.085 0.915 31 H 0.008 0.992 32 H 0.039 0.961 33 H 0.264 0.736 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.402 0.598 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.120 0.880 48 H 0.117 0.883 49 H 0.063 0.937 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.604 3.749 15.174 22.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.015 3.985 3 H 0.062 0.938 4 C -0.546 4.546 5 H 0.074 0.926 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.335 3.665 13 O -0.438 6.438 14 N -0.362 5.362 15 C -0.014 4.014 16 C -0.164 4.164 17 C -0.089 4.089 18 C -0.195 4.195 19 C 0.013 3.987 20 N -0.374 5.374 21 C 0.306 3.694 22 O -0.413 6.413 23 C -0.130 4.130 24 H 0.126 0.874 25 C -0.208 4.208 26 C -0.051 4.051 27 C -0.110 4.110 28 N -0.112 5.112 29 C -0.003 4.003 30 H 0.104 0.896 31 H 0.027 0.973 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.237 0.763 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.138 0.862 48 H 0.135 0.865 49 H 0.082 0.918 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.883 4.016 16.237 23.066 hybrid contribution 0.282 -0.521 -1.377 1.499 sum 16.165 3.494 14.860 22.234 Atomic orbital electron populations 1.21614 0.96118 1.01078 0.99280 1.18881 0.94543 0.96232 0.88802 0.93813 1.20678 1.32126 1.12537 0.89218 0.92559 1.24899 0.94819 0.94931 0.98935 1.69878 1.36058 1.22603 1.23866 0.86535 0.79098 0.79910 0.81784 1.20095 1.21122 1.20193 1.21790 0.77063 0.83561 0.84039 1.90544 1.57091 1.29896 1.66271 1.48626 1.26292 1.27872 1.33365 1.22234 0.94780 0.88451 0.95888 1.22996 1.00572 0.95275 0.97531 1.21855 0.96312 0.96880 0.93849 1.21834 0.95158 1.00815 1.01672 1.21352 0.87845 0.95860 0.93687 1.45982 1.30248 1.53643 1.07482 1.20270 0.85532 0.80869 0.82757 1.90754 1.53944 1.50269 1.46364 1.21242 0.94824 1.01405 0.95542 0.87399 1.21880 0.95846 1.01691 1.01382 1.19098 0.92853 0.97668 0.95436 1.29124 0.94304 0.93952 0.93574 1.81272 1.11210 1.10439 1.08324 1.21716 0.92165 0.95896 0.90509 0.89626 0.97251 0.94139 0.92639 0.91222 0.90101 0.90439 0.90171 0.91290 0.92644 0.92034 0.90748 0.90864 0.76256 0.91229 0.91279 0.91434 0.86237 0.86496 0.91828 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 8.46 37.16 0.31 -2.74 16 2 C 0.04 0.90 2.34 -92.92 -0.22 0.68 16 3 H 0.04 1.07 6.37 -51.93 -0.33 0.74 16 4 C -0.51 -13.57 8.55 -34.44 -0.29 -13.86 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -23.99 11.38 55.43 0.63 -23.36 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 C 0.54 12.45 6.78 -10.98 -0.07 12.38 16 13 O -0.56 -14.51 16.71 5.56 0.09 -14.42 16 14 N -0.63 -11.07 3.32 -170.39 -0.57 -11.63 16 15 C 0.11 1.54 6.24 -2.41 -0.02 1.52 16 16 C -0.13 -1.17 5.73 -24.47 -0.14 -1.31 16 17 C -0.09 -0.81 0.61 -152.67 -0.09 -0.91 16 18 C -0.14 -1.09 8.28 37.16 0.31 -0.79 16 19 C 0.14 1.13 4.50 -4.04 -0.02 1.12 16 20 N -0.72 -4.35 5.00 -60.30 -0.30 -4.65 16 21 C 0.52 3.56 7.15 -10.99 -0.08 3.48 16 22 O -0.54 -5.72 15.92 5.55 0.09 -5.63 16 23 C -0.11 -0.42 2.70 -91.77 -0.25 -0.67 16 24 H 0.11 0.29 8.14 -51.92 -0.42 -0.13 16 25 C -0.15 -0.48 8.90 37.16 0.33 -0.15 16 26 C -0.01 -0.04 4.54 -29.52 -0.13 -0.18 16 27 C 0.21 1.38 14.40 -20.76 -0.30 1.08 16 28 N -0.44 -4.30 18.54 42.15 0.78 -3.52 16 29 C 0.12 1.70 6.05 -3.06 -0.02 1.68 16 30 H 0.09 2.23 6.23 -51.93 -0.32 1.91 16 31 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.04 1.04 8.02 -51.93 -0.42 0.63 16 33 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.07 0.99 7.67 -51.93 -0.40 0.59 16 35 H 0.08 1.21 6.86 -51.93 -0.36 0.85 16 36 H 0.08 0.73 8.02 -51.93 -0.42 0.31 16 37 H 0.08 0.54 8.04 -51.93 -0.42 0.12 16 38 H 0.07 0.66 7.39 -51.93 -0.38 0.28 16 39 H 0.05 0.30 6.69 -51.93 -0.35 -0.05 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.40 1.57 6.43 -40.82 -0.26 1.30 16 44 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.07 0.16 7.56 -51.93 -0.39 -0.24 16 46 H 0.07 0.25 7.38 -51.92 -0.38 -0.13 16 47 H 0.12 0.45 7.95 -51.93 -0.41 0.04 16 48 H 0.12 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 0.92 7.82 -51.93 -0.41 0.51 16 50 H 0.06 0.95 7.84 -51.93 -0.41 0.54 16 LS Contribution 405.54 15.07 6.11 6.11 Total: -1.00 -34.18 405.54 -7.11 -41.29 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -8.15 Total: -2.76 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -0.77 Total: 3.00 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.54 Total: -43.16 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.18 Total: -20.05 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.18 -7.11 -41.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645984728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.338 kcal (2) G-P(sol) polarization free energy of solvation -34.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds