Wall clock time and date at job start Tue Mar 31 2020 19:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47633 * 2 1 4 4 C 1.50702 * 109.47309 * 240.00346 * 2 1 3 5 5 H 1.08003 * 120.00106 * 240.00168 * 4 2 1 6 6 C 1.37876 * 120.00233 * 59.99490 * 4 2 1 7 7 N 1.31516 * 119.99837 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00309 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47408 * 59.99842 * 8 6 4 10 10 H 1.48494 * 109.47262 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46687 * 300.00139 * 8 6 4 12 12 C 1.50700 * 109.47200 * 120.00134 * 2 1 3 13 13 O 1.21273 * 120.00006 * 34.76702 * 12 2 1 14 14 N 1.34781 * 119.99884 * 214.76412 * 12 2 1 15 15 C 1.47423 * 125.65230 * 4.87898 * 14 12 2 16 16 C 1.55123 * 104.72418 * 155.81781 * 15 14 12 17 17 C 1.55155 * 101.48627 * 37.29682 * 16 15 14 18 18 C 1.53008 * 110.71696 * 82.69589 * 17 16 15 19 19 C 1.52994 * 110.72399 * 205.96924 * 17 16 15 20 20 N 1.46501 * 109.47155 * 293.52446 * 19 17 16 21 21 C 1.34777 * 120.00480 * 180.02562 * 20 19 17 22 22 O 1.21288 * 119.99729 * 359.97438 * 21 20 19 23 23 C 1.50696 * 120.00588 * 180.02562 * 21 20 19 24 24 H 1.09008 * 109.46758 * 59.99768 * 23 21 20 25 25 C 1.53003 * 109.46841 * 300.00148 * 23 21 20 26 26 C 1.53001 * 109.47596 * 179.97438 * 23 21 20 27 27 C 1.47196 * 109.47333 * 184.99852 * 26 23 21 28 28 N 9.99110 * 150.79698 * 200.10363 * 15 1 2 29 29 C 1.47021 * 125.64570 * 185.19514 * 14 12 2 30 30 H 1.08997 * 109.46859 * 54.70736 * 1 2 3 31 31 H 1.08995 * 109.47126 * 294.70946 * 1 2 3 32 32 H 1.08996 * 109.46968 * 174.70805 * 1 2 3 33 33 H 0.96993 * 119.99830 * 179.97438 * 7 6 4 34 34 H 1.08994 * 110.37128 * 274.75016 * 15 14 12 35 35 H 1.09005 * 110.36314 * 37.06793 * 15 14 12 36 36 H 1.09001 * 111.19667 * 279.19585 * 16 15 14 37 37 H 1.08995 * 110.93940 * 155.29144 * 16 15 14 38 38 H 1.08996 * 109.47092 * 306.47724 * 18 17 16 39 39 H 1.09000 * 109.46849 * 66.47758 * 18 17 16 40 40 H 1.09003 * 109.47114 * 186.48008 * 18 17 16 41 41 H 1.09001 * 109.47103 * 53.51987 * 19 17 16 42 42 H 1.09000 * 109.47116 * 173.52527 * 19 17 16 43 43 H 0.97007 * 119.99724 * 359.97438 * 20 19 17 44 44 H 1.08996 * 109.46757 * 299.99464 * 25 23 21 45 45 H 1.08998 * 109.47425 * 60.00101 * 25 23 21 46 46 H 1.09009 * 109.46670 * 180.02562 * 25 23 21 47 47 H 1.08995 * 109.46998 * 305.00639 * 26 23 21 48 48 H 1.09005 * 109.46611 * 64.99597 * 26 23 21 49 49 H 1.09005 * 109.88028 * 300.43195 * 29 14 12 50 50 H 1.08993 * 109.88699 * 61.60077 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8260 -2.5201 -4.0079 10 1 1.8269 -0.4198 -5.2205 11 1 3.8064 -1.1206 -4.0082 12 6 2.0323 -0.7104 1.2304 13 8 1.4210 -1.6587 1.6751 14 7 3.1610 -0.2919 1.8366 15 6 3.9435 0.9014 1.4664 16 6 4.7078 1.2886 2.7595 17 6 5.0554 -0.1067 3.3424 18 6 6.3152 -0.6706 2.6819 19 6 5.2258 -0.0319 4.8609 20 7 6.4047 0.7767 5.1809 21 6 6.7532 0.9810 6.4667 22 8 6.0903 0.4958 7.3590 23 6 7.9656 1.8133 6.7959 24 1 7.8357 2.8187 6.3952 25 6 9.2080 1.1728 6.1736 26 6 8.1360 1.8880 8.3145 27 6 9.2471 2.7972 8.6394 28 7 10.1051 3.4983 8.8901 29 6 3.8194 -0.9535 2.9725 30 1 -0.3633 0.5937 -0.8388 31 1 -0.3633 0.4296 0.9335 32 1 -0.3633 -1.0233 -0.0948 33 1 0.7094 1.1618 -3.4843 34 1 4.6438 0.6626 0.6661 35 1 3.2797 1.7107 1.1618 36 1 4.0690 1.8489 3.4421 37 1 5.6120 1.8500 2.5243 38 1 6.1930 -0.6610 1.5989 39 1 7.1743 -0.0583 2.9562 40 1 6.4757 -1.6943 3.0204 41 1 4.3408 0.4251 5.3037 42 1 5.3549 -1.0372 5.2620 43 1 6.9351 1.1645 4.4672 44 1 9.3377 0.1675 6.5742 45 1 9.0864 1.1200 5.0917 46 1 10.0850 1.7746 6.4120 47 1 7.2168 2.2618 8.7653 48 1 8.3539 0.8939 8.7049 49 1 3.1360 -1.0016 3.8204 50 1 4.1304 -1.9583 2.6869 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645984728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:56 Heat of formation + Delta-G solvation = -86.884123 kcal Electronic energy + Delta-G solvation = -29032.871359 eV Core-core repulsion = 25058.483141 eV Total energy + Delta-G solvation = -3974.388218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.45997 -40.75368 -39.14527 -37.89990 -35.96562 -35.78900 -35.22685 -33.31976 -32.28870 -30.53326 -29.11115 -28.07810 -27.45179 -27.12061 -24.88060 -24.02750 -23.37151 -21.07903 -20.22829 -19.91804 -18.79782 -18.46129 -18.12423 -17.40560 -17.11390 -16.72548 -16.60860 -16.42582 -15.89124 -15.72465 -15.24319 -14.95566 -14.84432 -14.77224 -14.44681 -14.33865 -13.94395 -13.78514 -13.65076 -13.53935 -13.43766 -13.31572 -13.15351 -12.93405 -12.89929 -12.85014 -12.74533 -12.70441 -12.56343 -12.23290 -12.15500 -12.01095 -11.94339 -11.86661 -11.63034 -11.53684 -11.08745 -10.76592 -10.62443 -10.32902 -9.99509 -9.51952 -8.17276 -6.31565 1.41979 1.45008 1.51857 1.69749 1.72574 1.84392 1.88471 2.12931 2.35331 2.45455 3.09126 3.11968 3.42698 3.54134 3.70078 3.74003 3.99184 4.04422 4.13554 4.23457 4.26200 4.39348 4.40376 4.63367 4.70287 4.73004 4.77265 4.81007 4.83264 4.86269 4.90684 4.93316 4.96391 4.97880 5.07516 5.09502 5.10765 5.17930 5.20117 5.35201 5.43141 5.47645 5.49908 5.55649 5.70294 5.84410 6.13806 6.60495 6.63420 6.65230 6.70860 7.32936 7.33357 7.44732 8.88505 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022952 B = 0.002105 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.644644 B =13300.095455 C =13734.000911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.034 3.966 3 H 0.044 0.956 4 C -0.526 4.526 5 H 0.042 0.958 6 C 0.026 3.974 7 N -0.906 5.906 8 Si 0.959 3.041 9 H -0.281 1.281 10 H -0.277 1.277 11 H -0.264 1.264 12 C 0.536 3.464 13 O -0.602 6.602 14 N -0.622 5.622 15 C 0.098 3.902 16 C -0.110 4.110 17 C -0.068 4.068 18 C -0.136 4.136 19 C 0.146 3.854 20 N -0.709 5.709 21 C 0.524 3.476 22 O -0.577 6.577 23 C -0.097 4.097 24 H 0.128 0.872 25 C -0.150 4.150 26 C -0.008 4.008 27 C 0.240 3.760 28 N -0.494 5.494 29 C 0.112 3.888 30 H 0.072 0.928 31 H 0.023 0.977 32 H 0.019 0.981 33 H 0.267 0.733 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.416 0.584 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.063 0.937 47 H 0.127 0.873 48 H 0.127 0.873 49 H 0.056 0.944 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.046 4.620 15.186 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.013 3.987 3 H 0.062 0.938 4 C -0.565 4.565 5 H 0.060 0.940 6 C -0.174 4.174 7 N -0.544 5.544 8 Si 0.784 3.216 9 H -0.207 1.207 10 H -0.202 1.202 11 H -0.189 1.189 12 C 0.328 3.672 13 O -0.484 6.484 14 N -0.355 5.355 15 C -0.024 4.024 16 C -0.148 4.148 17 C -0.069 4.069 18 C -0.193 4.193 19 C 0.021 3.979 20 N -0.363 5.363 21 C 0.311 3.689 22 O -0.456 6.456 23 C -0.120 4.120 24 H 0.146 0.854 25 C -0.207 4.207 26 C -0.049 4.049 27 C -0.077 4.077 28 N -0.172 5.172 29 C -0.011 4.011 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.140 0.860 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.255 0.745 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.082 0.918 47 H 0.145 0.855 48 H 0.145 0.855 49 H 0.075 0.925 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 18.391 4.934 16.243 25.029 hybrid contribution -0.517 -0.804 -1.361 1.663 sum 17.875 4.130 14.882 23.623 Atomic orbital electron populations 1.21469 0.96763 0.99490 0.99412 1.18802 0.94191 0.96237 0.89511 0.93835 1.20808 1.32623 1.12480 0.90552 0.93969 1.25603 0.94835 0.95551 1.01441 1.69963 1.36381 1.23370 1.24667 0.85602 0.79180 0.78355 0.78491 1.20660 1.20193 1.18902 1.21383 0.78611 0.83143 0.84027 1.90507 1.58945 1.31548 1.67397 1.48546 1.24920 1.28738 1.33327 1.22523 0.94541 0.86612 0.98695 1.23003 1.01605 0.95461 0.94689 1.21694 0.94663 0.95818 0.94730 1.21848 0.95430 1.01607 1.00437 1.21074 0.88458 0.95963 0.92383 1.45813 1.29474 1.53055 1.07910 1.20682 0.85694 0.80288 0.82267 1.90753 1.55418 1.51920 1.47512 1.21197 0.93657 1.01857 0.95244 0.85411 1.21901 0.95050 1.01408 1.02384 1.19247 0.92070 0.97556 0.95993 1.29427 0.93551 0.92821 0.91852 1.81309 1.13149 1.12439 1.10319 1.21972 0.93946 0.96342 0.88812 0.90937 0.95780 0.96159 0.92336 0.91112 0.91270 0.90013 0.86008 0.92854 0.88991 0.92071 0.91967 0.91435 0.74535 0.91392 0.89658 0.91795 0.85550 0.85502 0.92549 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.82 8.46 71.98 0.61 -5.21 16 2 C 0.03 1.70 2.34 -12.29 -0.03 1.68 16 3 H 0.04 2.18 6.37 -2.39 -0.02 2.16 16 4 C -0.53 -28.74 8.55 25.60 0.22 -28.52 16 5 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 6 C 0.03 1.40 5.30 84.65 0.45 1.85 16 7 N -0.91 -49.27 11.38 21.45 0.24 -49.03 16 8 Si 0.96 42.04 29.54 68.60 2.03 44.07 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 12 C 0.54 25.37 6.78 87.66 0.59 25.97 16 13 O -0.60 -32.41 16.71 -3.01 -0.05 -32.46 16 14 N -0.62 -22.19 3.32 -811.37 -2.70 -24.89 16 15 C 0.10 2.65 6.24 86.93 0.54 3.20 16 16 C -0.11 -1.70 5.73 32.06 0.18 -1.52 16 17 C -0.07 -1.10 0.61 -50.99 -0.03 -1.13 16 18 C -0.14 -1.72 8.28 71.98 0.60 -1.13 16 19 C 0.15 2.07 4.50 86.38 0.39 2.46 16 20 N -0.71 -5.89 5.00 -463.06 -2.32 -8.21 16 21 C 0.52 5.53 7.15 87.66 0.63 6.16 16 22 O -0.58 -11.13 15.92 -3.05 -0.05 -11.17 16 23 C -0.10 -0.42 2.70 -11.54 -0.03 -0.46 16 24 H 0.13 0.13 8.14 -2.38 -0.02 0.11 16 25 C -0.15 -0.43 8.90 71.98 0.64 0.21 16 26 C -0.01 -0.05 4.54 28.79 0.13 0.08 16 27 C 0.24 2.75 14.40 89.44 1.29 4.04 16 28 N -0.49 -9.29 18.54 20.01 0.37 -8.92 16 29 C 0.11 3.13 6.05 86.73 0.52 3.65 16 30 H 0.07 3.88 6.23 -2.39 -0.01 3.86 16 31 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.02 1.06 8.02 -2.39 -0.02 1.04 16 33 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 34 H 0.07 1.92 7.67 -2.39 -0.02 1.90 16 35 H 0.07 2.03 6.86 -2.38 -0.02 2.02 16 36 H 0.08 1.27 8.02 -2.39 -0.02 1.25 16 37 H 0.12 0.97 8.04 -2.39 -0.02 0.95 16 38 H 0.05 0.89 7.39 -2.39 -0.02 0.87 16 39 H 0.09 0.51 6.69 -2.39 -0.02 0.50 16 40 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 42 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.42 1.07 6.43 -92.70 -0.60 0.48 16 44 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 45 H 0.08 -0.02 7.56 -2.39 -0.02 -0.03 16 46 H 0.06 0.28 7.38 -2.38 -0.02 0.26 16 47 H 0.13 0.65 7.95 -2.39 -0.02 0.63 16 48 H 0.13 0.55 8.14 -2.38 -0.02 0.53 16 49 H 0.06 1.65 7.82 -2.38 -0.02 1.63 16 50 H 0.05 1.63 7.84 -2.39 -0.02 1.61 16 Total: -1.00 -77.56 405.54 4.58 -72.98 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 0.35 Total: 6.29 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 6.70 Total: 11.34 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -4.40 Total: -91.05 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -0.10 Total: -43.63 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -77.56 4.58 -72.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645984728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.900 kcal (2) G-P(sol) polarization free energy of solvation -77.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds