Wall clock time and date at job start Tue Mar 31 2020 19:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 C 1.52992 * 109.47195 * 240.00068 * 2 1 3 5 5 C 1.47199 * 109.47256 * 64.99702 * 4 2 1 6 6 N 3.43547 * 86.99678 * 280.50865 * 2 1 3 7 7 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 8 8 O 1.21279 * 120.00113 * 120.00322 * 7 2 1 9 9 N 1.34784 * 119.99961 * 300.00090 * 7 2 1 10 10 C 1.46494 * 119.99635 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47001 * 180.02562 * 10 9 7 12 12 C 1.52997 * 110.29447 * 57.86135 * 11 10 9 13 13 C 1.54622 * 110.32557 * 295.62160 * 11 10 9 14 14 C 1.54940 * 102.83803 * 219.26217 * 13 11 10 15 15 N 1.48111 * 103.25999 * 37.37223 * 14 13 11 16 16 C 1.34775 * 127.03549 * 140.74175 * 15 14 13 17 17 O 1.21285 * 120.00026 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00110 * 359.96514 * 16 15 14 19 19 H 1.09004 * 109.47186 * 299.99849 * 18 16 15 20 20 C 1.53001 * 109.47297 * 59.99499 * 18 16 15 21 21 C 1.50696 * 109.47476 * 179.97438 * 18 16 15 22 22 H 1.08002 * 119.99962 * 359.97438 * 21 18 16 23 23 C 1.37877 * 120.00228 * 179.97438 * 21 18 16 24 24 N 1.31507 * 119.99889 * 0.02562 * 23 21 18 25 25 Si 1.86797 * 119.99846 * 179.97438 * 23 21 18 26 26 H 1.48498 * 109.47438 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47313 * 120.00062 * 25 23 21 28 28 H 1.48500 * 109.47210 * 239.99886 * 25 23 21 29 29 C 1.47488 * 105.93006 * 320.71102 * 15 14 13 30 30 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 31 31 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 33 33 H 1.08999 * 109.47251 * 185.00222 * 4 2 1 34 34 H 1.08999 * 109.47140 * 304.99739 * 4 2 1 35 35 H 0.96995 * 120.00015 * 359.72695 * 9 7 2 36 36 H 1.09005 * 109.47306 * 299.99972 * 10 9 7 37 37 H 1.09002 * 109.47518 * 60.00210 * 10 9 7 38 38 H 1.08998 * 109.46987 * 60.70384 * 12 11 10 39 39 H 1.09002 * 109.47736 * 180.70402 * 12 11 10 40 40 H 1.08996 * 109.47313 * 300.70679 * 12 11 10 41 41 H 1.09001 * 110.73574 * 337.59203 * 13 11 10 42 42 H 1.08994 * 110.74315 * 100.92037 * 13 11 10 43 43 H 1.09002 * 110.65945 * 278.92585 * 14 13 11 44 44 H 1.09003 * 110.66327 * 155.81653 * 14 13 11 45 45 H 1.09002 * 109.46724 * 300.00296 * 20 18 16 46 46 H 1.09000 * 109.47102 * 59.99794 * 20 18 16 47 47 H 1.09005 * 109.47198 * 180.02562 * 20 18 16 48 48 H 0.97007 * 119.99715 * 180.02562 * 24 23 21 49 49 H 1.09000 * 109.91267 * 266.08040 * 29 15 14 50 50 H 1.09003 * 109.91042 * 144.80372 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6506 0.0390 -2.4480 6 7 1.3500 0.6257 -3.3732 7 6 2.0323 -0.7104 1.2305 8 8 2.7296 -1.6964 1.1193 9 7 1.7067 -0.2499 2.4546 10 6 2.1955 -0.9402 3.6507 11 6 1.6848 -0.2194 4.9000 12 6 0.1559 -0.1631 4.8925 13 6 2.2766 1.2070 4.9767 14 6 2.5704 1.3771 6.4884 15 7 3.0376 0.0323 6.8971 16 6 4.0348 -0.2539 7.7573 17 8 4.3119 -1.4091 8.0019 18 6 4.8058 0.8614 8.4151 19 1 5.2852 1.4721 7.6500 20 6 3.8485 1.7291 9.2345 21 6 5.8567 0.2777 9.3239 22 1 5.9561 -0.7937 9.4163 23 6 6.6914 1.1115 10.0374 24 7 6.5701 2.4162 9.9253 25 14 7.9935 0.3879 11.1645 26 1 7.9229 -1.0945 11.1148 27 1 9.3376 0.8353 10.7192 28 1 7.7546 0.8479 12.5561 29 6 2.1877 -0.9296 6.1706 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.1263 -0.7995 -1.2055 34 1 1.6054 -1.7198 -1.2951 35 1 1.1523 0.5410 2.5436 36 1 1.8325 -1.9681 3.6509 37 1 3.2855 -0.9398 3.6506 38 1 -0.2450 -1.1766 4.8901 39 1 -0.1928 0.3635 5.7809 40 1 -0.1839 0.3641 4.0010 41 1 3.1958 1.2753 4.3948 42 1 1.5492 1.9453 4.6394 43 1 1.6635 1.6497 7.0282 44 1 3.3517 2.1203 6.6472 45 1 3.0882 2.1513 8.5773 46 1 3.3691 1.1184 9.9995 47 1 4.4061 2.5361 9.7099 48 1 7.1576 3.0028 10.4271 49 1 1.3414 -1.2209 6.7927 50 1 2.7715 -1.8088 5.8980 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645984729.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:00 Heat of formation + Delta-G solvation = -59.398667 kcal Electronic energy + Delta-G solvation = -29112.690035 eV Core-core repulsion = 25139.493676 eV Total energy + Delta-G solvation = -3973.196359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.64761 -39.68687 -37.77473 -37.24157 -35.01430 -34.73845 -33.80069 -32.38722 -30.38469 -29.51456 -28.72452 -27.23498 -26.16603 -25.16219 -24.10827 -23.21834 -21.76076 -20.47398 -19.31589 -18.68923 -18.34733 -17.05919 -16.49380 -16.26172 -16.12803 -15.70398 -15.51539 -15.06578 -15.02438 -14.46257 -14.32226 -14.23300 -13.92740 -13.74258 -13.43796 -13.18857 -13.10808 -12.97191 -12.73847 -12.68072 -12.56590 -12.45538 -12.15577 -12.01046 -11.75360 -11.67028 -11.58208 -11.48777 -11.05319 -11.02606 -10.89541 -10.74518 -10.68958 -10.46731 -10.26653 -10.13624 -9.96663 -9.35916 -8.96877 -8.64659 -8.33902 -8.16304 -6.04593 -4.07303 2.23260 2.27487 2.37371 2.79612 3.31773 3.39313 3.46706 3.56894 3.61184 3.67653 4.07340 4.28696 4.32032 4.35155 4.45533 4.46852 4.53245 4.71912 4.97333 5.05380 5.07537 5.11014 5.19259 5.28849 5.31588 5.36278 5.37607 5.45546 5.54180 5.60996 5.63576 5.72202 5.76771 5.84384 5.93758 6.02151 6.06660 6.12626 6.21199 6.60045 6.76081 6.84950 6.96146 7.11576 7.13217 7.46629 7.74081 7.85479 7.99646 8.13181 8.39176 9.01904 9.19505 9.58273 11.03058 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019957 B = 0.002136 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.706088 B =13103.308654 C =13500.724793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 H 0.108 0.892 4 C -0.011 4.011 5 C 0.209 3.791 6 N -0.436 5.436 7 C 0.519 3.481 8 O -0.535 6.535 9 N -0.722 5.722 10 C 0.134 3.866 11 C -0.088 4.088 12 C -0.136 4.136 13 C -0.129 4.129 14 C 0.106 3.894 15 N -0.632 5.632 16 C 0.539 3.461 17 O -0.543 6.543 18 C 0.035 3.965 19 H 0.051 0.949 20 C -0.137 4.137 21 C -0.500 4.500 22 H 0.074 0.926 23 C 0.058 3.942 24 N -0.896 5.896 25 Si 0.899 3.101 26 H -0.271 1.271 27 H -0.284 1.284 28 H -0.284 1.284 29 C 0.116 3.884 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.401 0.599 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.018 0.982 46 H 0.029 0.971 47 H 0.092 0.908 48 H 0.260 0.740 49 H 0.063 0.937 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.236 -0.263 -17.545 23.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 H 0.126 0.874 4 C -0.051 4.051 5 C -0.109 4.109 6 N -0.113 5.113 7 C 0.305 3.695 8 O -0.411 6.411 9 N -0.374 5.374 10 C 0.010 3.990 11 C -0.089 4.089 12 C -0.194 4.194 13 C -0.167 4.167 14 C -0.018 4.018 15 N -0.369 5.369 16 C 0.331 3.669 17 O -0.418 6.418 18 C 0.015 3.985 19 H 0.069 0.931 20 C -0.195 4.195 21 C -0.538 4.538 22 H 0.092 0.908 23 C -0.143 4.143 24 N -0.536 5.536 25 Si 0.727 3.273 26 H -0.195 1.195 27 H -0.210 1.210 28 H -0.211 1.211 29 C -0.008 4.008 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.236 0.764 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.037 0.963 46 H 0.048 0.952 47 H 0.111 0.889 48 H 0.070 0.930 49 H 0.081 0.919 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.831 -0.627 -18.695 24.505 hybrid contribution 0.484 -0.032 1.033 1.142 sum -15.348 -0.659 -17.661 23.407 Atomic orbital electron populations 1.21873 0.92134 1.03512 1.03199 1.21239 0.98244 1.01440 0.92088 0.87408 1.19101 1.04337 0.97654 0.84009 1.29125 0.93265 0.93904 0.94607 1.81267 1.09206 1.09456 1.11369 1.20275 0.80209 0.84623 0.84423 1.90761 1.37511 1.26139 1.86721 1.45986 1.53848 1.32019 1.05559 1.21490 0.99671 0.95801 0.82007 1.21738 0.96294 0.96422 0.94484 1.21872 0.93138 1.02371 1.01984 1.22924 1.01280 0.94910 0.97626 1.22482 0.99998 0.86533 0.92751 1.49102 1.35226 1.06658 1.45949 1.21835 0.76959 0.92187 0.75913 1.90550 1.66592 1.22900 1.61792 1.18823 0.93374 0.90799 0.95553 0.93115 1.21858 0.97197 1.01367 0.99040 1.21196 1.14320 0.94223 1.24100 0.90756 1.24944 0.97549 0.94822 0.96956 1.69876 1.38949 1.02216 1.42569 0.86401 0.81104 0.79624 0.80163 1.19543 1.21044 1.21065 1.21838 0.94645 0.93487 0.90824 0.91451 0.91250 0.91355 0.86195 0.86496 0.76389 0.90965 0.90705 0.92053 0.91709 0.92585 0.90453 0.90307 0.91546 0.89204 0.96286 0.95173 0.88918 0.93036 0.91870 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.48 8.90 37.16 0.33 -0.15 16 2 C -0.11 -0.45 2.70 -91.77 -0.25 -0.70 16 3 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 4 C -0.01 -0.05 4.53 -29.52 -0.13 -0.18 16 5 C 0.21 1.44 14.40 -20.76 -0.30 1.15 16 6 N -0.44 -4.40 18.54 42.15 0.78 -3.62 16 7 C 0.52 3.83 7.15 -10.98 -0.08 3.75 16 8 O -0.53 -6.14 15.92 5.56 0.09 -6.05 16 9 N -0.72 -4.60 4.97 -60.29 -0.30 -4.90 16 10 C 0.13 1.20 4.26 -4.04 -0.02 1.18 16 11 C -0.09 -0.77 0.67 -153.14 -0.10 -0.87 16 12 C -0.14 -0.86 8.03 37.16 0.30 -0.56 16 13 C -0.13 -1.15 5.73 -24.85 -0.14 -1.29 16 14 C 0.11 1.35 5.25 -2.13 -0.01 1.34 16 15 N -0.63 -10.66 3.28 -169.77 -0.56 -11.22 16 16 C 0.54 12.23 7.24 -10.99 -0.08 12.16 16 17 O -0.54 -14.28 15.80 5.55 0.09 -14.19 16 18 C 0.04 0.87 1.95 -92.93 -0.18 0.69 16 19 H 0.05 1.29 7.91 -51.93 -0.41 0.88 16 20 C -0.14 -3.06 8.71 37.16 0.32 -2.74 16 21 C -0.50 -14.12 8.37 -34.44 -0.29 -14.41 16 22 H 0.07 2.23 6.75 -52.49 -0.35 1.88 16 23 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 24 N -0.90 -24.82 11.32 55.43 0.63 -24.20 16 25 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 26 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 C 0.12 1.54 6.28 -2.98 -0.02 1.52 16 30 H 0.07 0.25 7.38 -51.93 -0.38 -0.14 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.14 7.57 -51.93 -0.39 -0.25 16 33 H 0.12 0.53 7.95 -51.93 -0.41 0.12 16 34 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.40 1.57 6.42 -40.82 -0.26 1.31 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.24 6.79 -51.93 -0.35 -0.12 16 41 H 0.08 0.76 7.84 -51.93 -0.41 0.35 16 42 H 0.08 0.48 7.86 -51.93 -0.41 0.07 16 43 H 0.07 0.76 7.98 -51.93 -0.41 0.35 16 44 H 0.09 1.26 6.52 -51.93 -0.34 0.93 16 45 H 0.02 0.34 5.29 -51.93 -0.27 0.07 16 46 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 48 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 49 H 0.06 0.80 7.68 -51.93 -0.40 0.40 16 50 H 0.07 1.10 7.59 -51.93 -0.39 0.71 16 LS Contribution 401.20 15.07 6.05 6.05 Total: -1.00 -35.27 401.20 -7.03 -42.29 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -8.04 Total: -3.25 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -0.74 Total: 2.38 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.55 Total: -43.94 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.18 Total: -20.24 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.27 -7.03 -42.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645984729.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.106 kcal (2) G-P(sol) polarization free energy of solvation -35.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds