Wall clock time and date at job start Tue Mar 31 2020 19:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 C 1.52992 * 109.47195 * 240.00068 * 2 1 3 5 5 C 1.47199 * 109.47256 * 64.99702 * 4 2 1 6 6 N 3.43547 * 86.99678 * 280.50865 * 2 1 3 7 7 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 8 8 O 1.21279 * 120.00113 * 120.00322 * 7 2 1 9 9 N 1.34784 * 119.99961 * 300.00090 * 7 2 1 10 10 C 1.46494 * 119.99635 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47001 * 180.02562 * 10 9 7 12 12 C 1.52997 * 110.29447 * 57.86135 * 11 10 9 13 13 C 1.54622 * 110.32557 * 295.62160 * 11 10 9 14 14 C 1.54940 * 102.83803 * 219.26217 * 13 11 10 15 15 N 1.48111 * 103.25999 * 37.37223 * 14 13 11 16 16 C 1.34775 * 127.03549 * 140.74175 * 15 14 13 17 17 O 1.21285 * 120.00026 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00110 * 359.96514 * 16 15 14 19 19 H 1.09004 * 109.47186 * 299.99849 * 18 16 15 20 20 C 1.53001 * 109.47297 * 59.99499 * 18 16 15 21 21 C 1.50696 * 109.47476 * 179.97438 * 18 16 15 22 22 H 1.08002 * 119.99962 * 359.97438 * 21 18 16 23 23 C 1.37877 * 120.00228 * 179.97438 * 21 18 16 24 24 N 1.31507 * 119.99889 * 0.02562 * 23 21 18 25 25 Si 1.86797 * 119.99846 * 179.97438 * 23 21 18 26 26 H 1.48498 * 109.47438 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47313 * 120.00062 * 25 23 21 28 28 H 1.48500 * 109.47210 * 239.99886 * 25 23 21 29 29 C 1.47488 * 105.93006 * 320.71102 * 15 14 13 30 30 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 31 31 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 33 33 H 1.08999 * 109.47251 * 185.00222 * 4 2 1 34 34 H 1.08999 * 109.47140 * 304.99739 * 4 2 1 35 35 H 0.96995 * 120.00015 * 359.72695 * 9 7 2 36 36 H 1.09005 * 109.47306 * 299.99972 * 10 9 7 37 37 H 1.09002 * 109.47518 * 60.00210 * 10 9 7 38 38 H 1.08998 * 109.46987 * 60.70384 * 12 11 10 39 39 H 1.09002 * 109.47736 * 180.70402 * 12 11 10 40 40 H 1.08996 * 109.47313 * 300.70679 * 12 11 10 41 41 H 1.09001 * 110.73574 * 337.59203 * 13 11 10 42 42 H 1.08994 * 110.74315 * 100.92037 * 13 11 10 43 43 H 1.09002 * 110.65945 * 278.92585 * 14 13 11 44 44 H 1.09003 * 110.66327 * 155.81653 * 14 13 11 45 45 H 1.09002 * 109.46724 * 300.00296 * 20 18 16 46 46 H 1.09000 * 109.47102 * 59.99794 * 20 18 16 47 47 H 1.09005 * 109.47198 * 180.02562 * 20 18 16 48 48 H 0.97007 * 119.99715 * 180.02562 * 24 23 21 49 49 H 1.09000 * 109.91267 * 266.08040 * 29 15 14 50 50 H 1.09003 * 109.91042 * 144.80372 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6506 0.0390 -2.4480 6 7 1.3500 0.6257 -3.3732 7 6 2.0323 -0.7104 1.2305 8 8 2.7296 -1.6964 1.1193 9 7 1.7067 -0.2499 2.4546 10 6 2.1955 -0.9402 3.6507 11 6 1.6848 -0.2194 4.9000 12 6 0.1559 -0.1631 4.8925 13 6 2.2766 1.2070 4.9767 14 6 2.5704 1.3771 6.4884 15 7 3.0376 0.0323 6.8971 16 6 4.0348 -0.2539 7.7573 17 8 4.3119 -1.4091 8.0019 18 6 4.8058 0.8614 8.4151 19 1 5.2852 1.4721 7.6500 20 6 3.8485 1.7291 9.2345 21 6 5.8567 0.2777 9.3239 22 1 5.9561 -0.7937 9.4163 23 6 6.6914 1.1115 10.0374 24 7 6.5701 2.4162 9.9253 25 14 7.9935 0.3879 11.1645 26 1 7.9229 -1.0945 11.1148 27 1 9.3376 0.8353 10.7192 28 1 7.7546 0.8479 12.5561 29 6 2.1877 -0.9296 6.1706 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.1263 -0.7995 -1.2055 34 1 1.6054 -1.7198 -1.2951 35 1 1.1523 0.5410 2.5436 36 1 1.8325 -1.9681 3.6509 37 1 3.2855 -0.9398 3.6506 38 1 -0.2450 -1.1766 4.8901 39 1 -0.1928 0.3635 5.7809 40 1 -0.1839 0.3641 4.0010 41 1 3.1958 1.2753 4.3948 42 1 1.5492 1.9453 4.6394 43 1 1.6635 1.6497 7.0282 44 1 3.3517 2.1203 6.6472 45 1 3.0882 2.1513 8.5773 46 1 3.3691 1.1184 9.9995 47 1 4.4061 2.5361 9.7099 48 1 7.1576 3.0028 10.4271 49 1 1.3414 -1.2209 6.7927 50 1 2.7715 -1.8088 5.8980 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645984729.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:59 Heat of formation + Delta-G solvation = -83.353963 kcal Electronic energy + Delta-G solvation = -29113.728814 eV Core-core repulsion = 25139.493676 eV Total energy + Delta-G solvation = -3974.235139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.47298 -40.75275 -39.09994 -37.91200 -36.02582 -35.76332 -35.24594 -33.50042 -32.19439 -30.52022 -29.12930 -27.85940 -27.36843 -27.03985 -24.99433 -24.12870 -23.33130 -21.11829 -20.23543 -20.07656 -18.81231 -18.37711 -17.84157 -17.22093 -17.12633 -16.84665 -16.62979 -16.45170 -15.97719 -15.70460 -15.27278 -14.90154 -14.81110 -14.69740 -14.53388 -14.38738 -14.28398 -13.73669 -13.57520 -13.50238 -13.38064 -13.22763 -13.16033 -12.97856 -12.92698 -12.81337 -12.70697 -12.64915 -12.41557 -12.20223 -12.05499 -12.01461 -11.95638 -11.84448 -11.56298 -11.48613 -11.02446 -10.78811 -10.60872 -10.29735 -10.02719 -9.57090 -8.16325 -6.26239 1.38091 1.40131 1.53628 1.68274 1.70272 1.82650 1.90671 2.12453 2.28573 2.46602 3.07460 3.12877 3.50398 3.56909 3.67935 3.72435 3.97855 4.03770 4.21628 4.24742 4.27776 4.38484 4.41470 4.65151 4.71043 4.73838 4.76303 4.79318 4.83206 4.85346 4.90088 4.92127 4.97538 5.00300 5.05847 5.09372 5.09990 5.21974 5.25377 5.34595 5.42213 5.48555 5.50415 5.59404 5.73574 5.97328 6.22593 6.58644 6.62215 6.68194 6.83651 7.32099 7.39422 7.49779 8.89537 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019957 B = 0.002136 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.706088 B =13103.308654 C =13500.724793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 H 0.127 0.873 4 C -0.009 4.009 5 C 0.240 3.760 6 N -0.492 5.492 7 C 0.521 3.479 8 O -0.580 6.580 9 N -0.707 5.707 10 C 0.141 3.859 11 C -0.070 4.070 12 C -0.132 4.132 13 C -0.117 4.117 14 C 0.093 3.907 15 N -0.629 5.629 16 C 0.534 3.466 17 O -0.595 6.595 18 C 0.033 3.967 19 H 0.038 0.962 20 C -0.121 4.121 21 C -0.530 4.530 22 H 0.044 0.956 23 C 0.020 3.980 24 N -0.908 5.908 25 Si 0.954 3.046 26 H -0.282 1.282 27 H -0.274 1.274 28 H -0.272 1.272 29 C 0.108 3.892 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.418 0.582 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.126 0.874 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.017 0.983 47 H 0.070 0.930 48 H 0.265 0.735 49 H 0.074 0.926 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.605 1.387 -18.481 26.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 H 0.145 0.855 4 C -0.050 4.050 5 C -0.076 4.076 6 N -0.170 5.170 7 C 0.308 3.692 8 O -0.459 6.459 9 N -0.360 5.360 10 C 0.017 3.983 11 C -0.071 4.071 12 C -0.190 4.190 13 C -0.155 4.155 14 C -0.029 4.029 15 N -0.363 5.363 16 C 0.325 3.675 17 O -0.475 6.475 18 C 0.012 3.988 19 H 0.055 0.945 20 C -0.179 4.179 21 C -0.569 4.569 22 H 0.063 0.937 23 C -0.179 4.179 24 N -0.547 5.547 25 Si 0.780 3.220 26 H -0.207 1.207 27 H -0.199 1.199 28 H -0.197 1.197 29 C -0.015 4.015 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.256 0.744 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.144 0.856 43 H 0.110 0.890 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.037 0.963 47 H 0.089 0.911 48 H 0.074 0.926 49 H 0.092 0.908 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.268 1.103 -19.665 26.863 hybrid contribution 1.210 -0.562 1.306 1.867 sum -17.058 0.541 -18.359 25.066 Atomic orbital electron populations 1.21894 0.90823 1.03780 1.04063 1.21197 0.99106 1.01709 0.89885 0.85490 1.19235 1.04632 0.97852 0.83234 1.29379 0.91582 0.92570 0.94090 1.81303 1.11215 1.11397 1.13095 1.20780 0.79235 0.83961 0.85259 1.90756 1.39573 1.28283 1.87331 1.45791 1.53566 1.32217 1.04466 1.21204 0.97859 0.96008 0.83275 1.21595 0.98363 0.95479 0.91649 1.21885 0.90095 1.03170 1.03816 1.22931 1.02258 0.95894 0.94430 1.22857 1.00317 0.83822 0.95886 1.48951 1.33593 1.09760 1.43992 1.21378 0.78307 0.90787 0.76998 1.90510 1.68651 1.24271 1.64062 1.18704 0.93542 0.91468 0.95074 0.94471 1.21656 0.97313 0.99917 0.98971 1.21317 1.16540 0.93073 1.25948 0.93732 1.25572 0.99059 0.95297 0.97957 1.69942 1.39353 1.02674 1.42775 0.85561 0.79216 0.78213 0.79003 1.20703 1.19890 1.19745 1.22132 0.93830 0.92652 0.92876 0.91676 0.91355 0.89412 0.85893 0.85464 0.74384 0.91651 0.93862 0.91970 0.91227 0.89353 0.91399 0.85600 0.88967 0.90622 0.92112 0.96339 0.91122 0.92550 0.90827 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 8.90 71.98 0.64 0.23 16 2 C -0.10 -0.53 2.70 -11.54 -0.03 -0.56 16 3 H 0.13 0.28 8.14 -2.39 -0.02 0.27 16 4 C -0.01 -0.07 4.53 28.79 0.13 0.06 16 5 C 0.24 2.96 14.40 89.44 1.29 4.25 16 6 N -0.49 -9.54 18.54 20.01 0.37 -9.17 16 7 C 0.52 6.49 7.15 87.66 0.63 7.12 16 8 O -0.58 -12.83 15.92 -3.03 -0.05 -12.87 16 9 N -0.71 -6.84 4.97 -463.05 -2.30 -9.14 16 10 C 0.14 2.33 4.26 86.38 0.37 2.70 16 11 C -0.07 -1.04 0.67 -51.29 -0.03 -1.07 16 12 C -0.13 -1.05 8.03 71.98 0.58 -0.47 16 13 C -0.12 -1.67 5.73 31.81 0.18 -1.49 16 14 C 0.09 2.15 5.25 86.73 0.46 2.60 16 15 N -0.63 -21.14 3.28 -809.40 -2.66 -23.80 16 16 C 0.53 25.19 7.24 87.66 0.63 25.83 16 17 O -0.59 -33.13 15.80 -3.05 -0.05 -33.18 16 18 C 0.03 1.68 1.95 -12.29 -0.02 1.66 16 19 H 0.04 1.96 7.91 -2.38 -0.02 1.95 16 20 C -0.12 -5.43 8.71 71.98 0.63 -4.80 16 21 C -0.53 -31.24 8.37 25.60 0.21 -31.02 16 22 H 0.04 2.84 6.75 -2.91 -0.02 2.82 16 23 C 0.02 1.15 5.30 84.66 0.45 1.60 16 24 N -0.91 -50.67 11.32 21.45 0.24 -50.43 16 25 Si 0.95 45.30 29.54 68.60 2.03 47.32 16 26 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 28 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 29 C 0.11 2.82 6.28 86.53 0.54 3.36 16 30 H 0.06 0.27 7.38 -2.39 -0.02 0.25 16 31 H 0.07 0.24 8.14 -2.38 -0.02 0.22 16 32 H 0.09 -0.08 7.57 -2.39 -0.02 -0.10 16 33 H 0.12 0.90 7.95 -2.39 -0.02 0.88 16 34 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.42 1.17 6.42 -92.71 -0.60 0.58 16 36 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.04 1.01 8.11 -2.39 -0.02 0.99 16 38 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.09 0.18 6.79 -2.39 -0.02 0.16 16 41 H 0.07 1.16 7.84 -2.39 -0.02 1.14 16 42 H 0.13 0.73 7.86 -2.39 -0.02 0.71 16 43 H 0.09 1.73 7.98 -2.39 -0.02 1.71 16 44 H 0.08 2.00 6.52 -2.39 -0.02 1.99 16 45 H 0.06 2.15 5.29 -2.39 -0.01 2.13 16 46 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.07 3.51 6.07 -2.38 -0.01 3.49 16 48 H 0.27 13.93 8.31 -92.70 -0.77 13.16 16 49 H 0.07 1.78 7.68 -2.39 -0.02 1.77 16 50 H 0.05 1.53 7.59 -2.39 -0.02 1.52 16 Total: -1.00 -82.90 401.20 4.59 -78.31 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: 0.35 Total: 2.95 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 6.65 Total: 10.00 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -4.34 Total: -92.53 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -0.10 Total: -46.06 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -82.90 4.59 -78.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645984729.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.041 kcal (2) G-P(sol) polarization free energy of solvation -82.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds