Wall clock time and date at job start Tue Mar 31 2020 19:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47263 * 2 1 4 4 C 1.50701 * 109.47671 * 239.99834 * 2 1 3 5 5 H 1.07993 * 120.00150 * 240.00365 * 4 2 1 6 6 C 1.37877 * 119.99625 * 59.99762 * 4 2 1 7 7 N 1.31517 * 120.00369 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99588 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47225 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46874 * 120.00372 * 8 6 4 11 11 H 1.48497 * 109.47156 * 239.99957 * 8 6 4 12 12 C 1.50699 * 109.46976 * 119.99437 * 2 1 3 13 13 O 1.21283 * 119.99623 * 93.93367 * 12 2 1 14 14 N 1.34776 * 120.00204 * 273.93288 * 12 2 1 15 15 C 1.48152 * 127.83532 * 174.98075 * 14 12 2 16 16 C 1.54392 * 104.61583 * 140.39721 * 15 14 12 17 17 C 1.54290 * 104.95802 * 23.86404 * 16 15 14 18 18 C 1.53003 * 110.34112 * 241.02096 * 17 16 15 19 19 C 1.53002 * 110.34191 * 118.87247 * 17 16 15 20 20 N 1.46507 * 109.47130 * 61.44932 * 19 17 16 21 21 C 1.34777 * 120.00203 * 179.72487 * 20 19 17 22 22 O 1.21283 * 119.99371 * 0.28063 * 21 20 19 23 23 C 1.50697 * 119.99919 * 180.27657 * 21 20 19 24 24 H 1.09002 * 109.46999 * 60.00629 * 23 21 20 25 25 C 1.52998 * 109.47263 * 299.99837 * 23 21 20 26 26 C 1.53005 * 109.46810 * 180.02562 * 23 21 20 27 27 C 1.47196 * 109.47126 * 185.00217 * 26 23 21 28 28 N 9.87227 * 130.10674 * 90.05020 * 15 1 2 29 29 C 1.48139 * 127.83958 * 354.95853 * 14 12 2 30 30 H 1.08998 * 109.46850 * 174.07800 * 1 2 3 31 31 H 1.08991 * 109.47337 * 294.08248 * 1 2 3 32 32 H 1.09001 * 109.46586 * 54.08593 * 1 2 3 33 33 H 0.97001 * 119.99787 * 179.97438 * 7 6 4 34 34 H 1.08998 * 110.40676 * 21.60905 * 15 14 12 35 35 H 1.09001 * 110.50197 * 259.22743 * 15 14 12 36 36 H 1.08994 * 110.34112 * 264.99857 * 16 15 14 37 37 H 1.08996 * 110.34088 * 142.73428 * 16 15 14 38 38 H 1.08999 * 109.47569 * 297.12895 * 18 17 16 39 39 H 1.08999 * 109.46746 * 57.13216 * 18 17 16 40 40 H 1.08999 * 109.46640 * 177.12180 * 18 17 16 41 41 H 1.08999 * 109.46680 * 301.45763 * 19 17 16 42 42 H 1.08994 * 109.47103 * 181.45183 * 19 17 16 43 43 H 0.97001 * 119.99645 * 0.02562 * 20 19 17 44 44 H 1.09000 * 109.46621 * 60.00301 * 25 23 21 45 45 H 1.09000 * 109.46965 * 180.02562 * 25 23 21 46 46 H 1.08997 * 109.47360 * 300.00109 * 25 23 21 47 47 H 1.09000 * 109.47137 * 304.99772 * 26 23 21 48 48 H 1.08996 * 109.47114 * 64.99776 * 26 23 21 49 49 H 1.08996 * 110.40832 * 100.81934 * 29 14 12 50 50 H 1.09005 * 110.40809 * 338.39102 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3217 -1.1204 -4.0078 9 1 3.1468 -2.2870 -3.6036 10 1 1.1664 -1.5867 -4.8160 11 1 3.1469 -0.1875 -4.8164 12 6 2.0323 -0.7103 1.2305 13 8 2.3024 -1.8916 1.1810 14 7 2.1815 -0.0328 2.3860 15 6 2.5599 -0.5718 3.7132 16 6 3.5114 0.4889 4.3075 17 6 3.1453 1.8020 3.5848 18 6 4.3501 2.3345 2.8065 19 6 2.6604 2.8463 4.5924 20 7 3.7341 3.1418 5.5444 21 6 3.5352 4.0436 6.5261 22 8 2.4655 4.6067 6.6244 23 6 4.6417 4.3520 7.5015 24 1 5.5057 4.7381 6.9605 25 6 5.0353 3.0751 8.2468 26 6 4.1585 5.4000 8.5061 27 6 5.2742 5.7896 9.3837 28 7 6.1356 6.0906 10.0605 29 6 2.0047 1.4197 2.6172 30 1 -0.3633 -1.0222 -0.1060 31 1 -0.3633 0.4193 0.9381 32 1 -0.3632 0.6028 -0.8323 33 1 0.7096 1.1617 -3.4845 34 1 3.0754 -1.5258 3.6030 35 1 1.6783 -0.6875 4.3437 36 1 4.5489 0.2223 4.1064 37 1 3.3458 0.5879 5.3803 38 1 5.1550 2.5737 3.5016 39 1 4.6917 1.5760 2.1022 40 1 4.0619 3.2332 2.2611 41 1 1.7951 2.4583 5.1298 42 1 2.3816 3.7583 4.0647 43 1 4.5897 2.6916 5.4655 44 1 5.3793 2.3283 7.5313 45 1 5.8353 3.2984 8.9526 46 1 4.1713 2.6892 8.7877 47 1 3.7947 6.2766 7.9701 48 1 3.3518 4.9815 9.1080 49 1 1.0355 1.6165 3.0755 50 1 2.1013 1.9683 1.6802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645984730.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:03 Heat of formation + Delta-G solvation = -61.052536 kcal Electronic energy + Delta-G solvation = -29153.789766 eV Core-core repulsion = 25180.521690 eV Total energy + Delta-G solvation = -3973.268076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.64741 -39.63981 -37.77826 -37.25197 -34.97936 -34.74467 -33.75844 -32.17322 -30.76542 -29.33853 -28.71803 -27.18502 -26.03771 -25.19673 -23.97265 -23.60919 -21.60581 -20.47647 -19.27134 -18.61516 -18.36769 -17.01782 -16.41155 -16.28006 -16.15068 -16.04179 -15.46879 -15.11058 -14.90655 -14.53326 -14.20789 -14.18288 -13.92722 -13.68054 -13.34948 -13.22456 -13.06624 -12.89124 -12.82041 -12.68855 -12.57981 -12.46894 -12.26243 -11.82411 -11.67638 -11.60257 -11.53923 -11.43551 -11.05609 -11.00090 -10.86452 -10.77769 -10.66561 -10.63355 -10.27190 -10.15332 -10.03585 -9.37515 -9.00391 -8.64969 -8.36952 -8.18813 -6.07228 -4.10230 2.21764 2.25198 2.35848 2.78256 3.29265 3.37111 3.43595 3.54459 3.59621 3.66220 4.06549 4.28215 4.33761 4.39911 4.43866 4.48750 4.64584 4.70918 4.99783 5.05713 5.09341 5.16429 5.18384 5.26145 5.27102 5.36921 5.46690 5.51177 5.54663 5.58343 5.73248 5.76556 5.83401 5.88296 6.00330 6.04980 6.10778 6.15395 6.24638 6.63297 6.76382 6.85973 6.97609 7.10277 7.11996 7.44367 7.73018 7.83164 7.96244 8.11088 8.37332 8.95745 9.17143 9.54792 11.00528 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024680 B = 0.002101 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.259175 B =13322.934835 C =13559.293041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.036 3.964 3 H 0.046 0.954 4 C -0.501 4.501 5 H 0.069 0.931 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.543 3.457 13 O -0.546 6.546 14 N -0.632 5.632 15 C 0.101 3.899 16 C -0.127 4.127 17 C -0.089 4.089 18 C -0.138 4.138 19 C 0.134 3.866 20 N -0.722 5.722 21 C 0.520 3.480 22 O -0.536 6.536 23 C -0.108 4.108 24 H 0.107 0.893 25 C -0.151 4.151 26 C -0.010 4.010 27 C 0.208 3.792 28 N -0.436 5.436 29 C 0.117 3.883 30 H 0.035 0.965 31 H 0.011 0.989 32 H 0.091 0.909 33 H 0.261 0.739 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.402 0.598 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.120 0.880 48 H 0.117 0.883 49 H 0.069 0.931 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.859 8.288 19.935 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.015 3.985 3 H 0.063 0.937 4 C -0.539 4.539 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.336 3.664 13 O -0.421 6.421 14 N -0.369 5.369 15 C -0.023 4.023 16 C -0.166 4.166 17 C -0.091 4.091 18 C -0.195 4.195 19 C 0.010 3.990 20 N -0.374 5.374 21 C 0.306 3.694 22 O -0.413 6.413 23 C -0.130 4.130 24 H 0.125 0.875 25 C -0.208 4.208 26 C -0.050 4.050 27 C -0.109 4.109 28 N -0.113 5.113 29 C -0.007 4.007 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.237 0.763 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.138 0.862 48 H 0.135 0.865 49 H 0.087 0.913 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.411 8.513 20.703 23.285 hybrid contribution 0.371 -0.693 -1.119 1.368 sum 6.782 7.821 19.584 22.151 Atomic orbital electron populations 1.21664 0.96056 1.00985 0.99741 1.18857 0.94243 0.96526 0.88837 0.93653 1.21103 1.31262 1.12497 0.89068 0.91269 1.24933 0.95066 0.95039 0.99061 1.69889 1.36965 1.22982 1.23491 0.86414 0.78674 0.79759 0.82511 1.19608 1.20955 1.21048 1.21813 0.74738 0.87098 0.82725 1.90548 1.50544 1.16879 1.84145 1.49285 1.71273 1.08106 1.08253 1.22144 0.97438 0.97774 0.84915 1.22692 1.00416 0.94051 0.99414 1.21796 0.97256 0.94633 0.95395 1.21875 0.96024 1.01775 0.99815 1.21433 0.89544 0.98435 0.89562 1.46004 1.17665 1.43166 1.30565 1.20258 0.88747 0.79127 0.81298 1.90752 1.26681 1.50745 1.73119 1.21243 0.98574 0.97399 0.95820 0.87456 1.21881 1.02617 0.95500 1.00825 1.19101 0.91174 1.00668 0.94105 1.29134 0.94468 0.93322 0.94021 1.81273 1.10783 1.09054 1.10179 1.22261 0.96344 0.82835 0.99306 0.94601 0.97014 0.89084 0.92960 0.90403 0.92055 0.90812 0.90605 0.92923 0.91478 0.91876 0.90805 0.90658 0.76280 0.91273 0.91463 0.91205 0.86231 0.86480 0.91327 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.86 37.16 0.33 -2.61 16 2 C 0.04 0.89 2.26 -92.92 -0.21 0.68 16 3 H 0.05 1.11 6.61 -51.93 -0.34 0.76 16 4 C -0.50 -13.93 8.33 -34.44 -0.29 -14.22 16 5 H 0.07 2.04 7.05 -52.49 -0.37 1.67 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -24.54 11.39 55.43 0.63 -23.91 16 8 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.54 12.23 7.00 -10.99 -0.08 12.16 16 13 O -0.55 -14.19 16.09 5.56 0.09 -14.10 16 14 N -0.63 -10.65 3.32 -169.31 -0.56 -11.21 16 15 C 0.10 1.32 7.07 -2.40 -0.02 1.31 16 16 C -0.13 -1.15 5.78 -25.33 -0.15 -1.30 16 17 C -0.09 -0.83 0.73 -153.10 -0.11 -0.94 16 18 C -0.14 -1.27 8.08 37.16 0.30 -0.97 16 19 C 0.13 1.06 4.32 -4.04 -0.02 1.05 16 20 N -0.72 -4.32 4.76 -60.29 -0.29 -4.61 16 21 C 0.52 3.50 7.15 -10.99 -0.08 3.42 16 22 O -0.54 -5.59 15.92 5.56 0.09 -5.51 16 23 C -0.11 -0.42 2.70 -91.77 -0.25 -0.67 16 24 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 25 C -0.15 -0.49 8.90 37.16 0.33 -0.16 16 26 C -0.01 -0.04 4.53 -29.52 -0.13 -0.18 16 27 C 0.21 1.38 14.40 -20.76 -0.30 1.08 16 28 N -0.44 -4.30 18.54 42.16 0.78 -3.52 16 29 C 0.12 1.52 5.98 -2.41 -0.01 1.50 16 30 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 2.28 6.25 -51.93 -0.32 1.95 16 33 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.08 1.14 7.85 -51.93 -0.41 0.74 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.65 7.71 -51.93 -0.40 0.25 16 37 H 0.08 0.53 7.49 -51.93 -0.39 0.14 16 38 H 0.05 0.36 6.96 -51.93 -0.36 -0.01 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.40 1.66 6.49 -40.82 -0.26 1.39 16 44 H 0.07 0.17 7.56 -51.93 -0.39 -0.23 16 45 H 0.07 0.25 7.38 -51.93 -0.38 -0.13 16 46 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.12 0.44 7.95 -51.93 -0.41 0.03 16 48 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 50 H 0.09 1.31 6.33 -51.93 -0.33 0.98 16 LS Contribution 405.46 15.07 6.11 6.11 Total: -1.00 -34.62 405.46 -7.09 -41.72 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -8.15 Total: -3.05 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.78 Total: 1.69 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.56 Total: -43.25 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: 0.18 Total: -19.60 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.62 -7.09 -41.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645984730.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.337 kcal (2) G-P(sol) polarization free energy of solvation -34.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds