Wall clock time and date at job start Tue Mar 31 2020 19:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47263 * 2 1 4 4 C 1.50701 * 109.47671 * 239.99834 * 2 1 3 5 5 H 1.07993 * 120.00150 * 240.00365 * 4 2 1 6 6 C 1.37877 * 119.99625 * 59.99762 * 4 2 1 7 7 N 1.31517 * 120.00369 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99588 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47225 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46874 * 120.00372 * 8 6 4 11 11 H 1.48497 * 109.47156 * 239.99957 * 8 6 4 12 12 C 1.50699 * 109.46976 * 119.99437 * 2 1 3 13 13 O 1.21283 * 119.99623 * 93.93367 * 12 2 1 14 14 N 1.34776 * 120.00204 * 273.93288 * 12 2 1 15 15 C 1.48152 * 127.83532 * 174.98075 * 14 12 2 16 16 C 1.54392 * 104.61583 * 140.39721 * 15 14 12 17 17 C 1.54290 * 104.95802 * 23.86404 * 16 15 14 18 18 C 1.53003 * 110.34112 * 241.02096 * 17 16 15 19 19 C 1.53002 * 110.34191 * 118.87247 * 17 16 15 20 20 N 1.46507 * 109.47130 * 61.44932 * 19 17 16 21 21 C 1.34777 * 120.00203 * 179.72487 * 20 19 17 22 22 O 1.21283 * 119.99371 * 0.28063 * 21 20 19 23 23 C 1.50697 * 119.99919 * 180.27657 * 21 20 19 24 24 H 1.09002 * 109.46999 * 60.00629 * 23 21 20 25 25 C 1.52998 * 109.47263 * 299.99837 * 23 21 20 26 26 C 1.53005 * 109.46810 * 180.02562 * 23 21 20 27 27 C 1.47196 * 109.47126 * 185.00217 * 26 23 21 28 28 N 9.87227 * 130.10674 * 90.05020 * 15 1 2 29 29 C 1.48139 * 127.83958 * 354.95853 * 14 12 2 30 30 H 1.08998 * 109.46850 * 174.07800 * 1 2 3 31 31 H 1.08991 * 109.47337 * 294.08248 * 1 2 3 32 32 H 1.09001 * 109.46586 * 54.08593 * 1 2 3 33 33 H 0.97001 * 119.99787 * 179.97438 * 7 6 4 34 34 H 1.08998 * 110.40676 * 21.60905 * 15 14 12 35 35 H 1.09001 * 110.50197 * 259.22743 * 15 14 12 36 36 H 1.08994 * 110.34112 * 264.99857 * 16 15 14 37 37 H 1.08996 * 110.34088 * 142.73428 * 16 15 14 38 38 H 1.08999 * 109.47569 * 297.12895 * 18 17 16 39 39 H 1.08999 * 109.46746 * 57.13216 * 18 17 16 40 40 H 1.08999 * 109.46640 * 177.12180 * 18 17 16 41 41 H 1.08999 * 109.46680 * 301.45763 * 19 17 16 42 42 H 1.08994 * 109.47103 * 181.45183 * 19 17 16 43 43 H 0.97001 * 119.99645 * 0.02562 * 20 19 17 44 44 H 1.09000 * 109.46621 * 60.00301 * 25 23 21 45 45 H 1.09000 * 109.46965 * 180.02562 * 25 23 21 46 46 H 1.08997 * 109.47360 * 300.00109 * 25 23 21 47 47 H 1.09000 * 109.47137 * 304.99772 * 26 23 21 48 48 H 1.08996 * 109.47114 * 64.99776 * 26 23 21 49 49 H 1.08996 * 110.40832 * 100.81934 * 29 14 12 50 50 H 1.09005 * 110.40809 * 338.39102 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3217 -1.1204 -4.0078 9 1 3.1468 -2.2870 -3.6036 10 1 1.1664 -1.5867 -4.8160 11 1 3.1469 -0.1875 -4.8164 12 6 2.0323 -0.7103 1.2305 13 8 2.3024 -1.8916 1.1810 14 7 2.1815 -0.0328 2.3860 15 6 2.5599 -0.5718 3.7132 16 6 3.5114 0.4889 4.3075 17 6 3.1453 1.8020 3.5848 18 6 4.3501 2.3345 2.8065 19 6 2.6604 2.8463 4.5924 20 7 3.7341 3.1418 5.5444 21 6 3.5352 4.0436 6.5261 22 8 2.4655 4.6067 6.6244 23 6 4.6417 4.3520 7.5015 24 1 5.5057 4.7381 6.9605 25 6 5.0353 3.0751 8.2468 26 6 4.1585 5.4000 8.5061 27 6 5.2742 5.7896 9.3837 28 7 6.1356 6.0906 10.0605 29 6 2.0047 1.4197 2.6172 30 1 -0.3633 -1.0222 -0.1060 31 1 -0.3633 0.4193 0.9381 32 1 -0.3632 0.6028 -0.8323 33 1 0.7096 1.1617 -3.4845 34 1 3.0754 -1.5258 3.6030 35 1 1.6783 -0.6875 4.3437 36 1 4.5489 0.2223 4.1064 37 1 3.3458 0.5879 5.3803 38 1 5.1550 2.5737 3.5016 39 1 4.6917 1.5760 2.1022 40 1 4.0619 3.2332 2.2611 41 1 1.7951 2.4583 5.1298 42 1 2.3816 3.7583 4.0647 43 1 4.5897 2.6916 5.4655 44 1 5.3793 2.3283 7.5313 45 1 5.8353 3.2984 8.9526 46 1 4.1713 2.6892 8.7877 47 1 3.7947 6.2766 7.9701 48 1 3.3518 4.9815 9.1080 49 1 1.0355 1.6165 3.0755 50 1 2.1013 1.9683 1.6802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645984730.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:02 Heat of formation + Delta-G solvation = -83.660825 kcal Electronic energy + Delta-G solvation = -29154.770135 eV Core-core repulsion = 25180.521690 eV Total energy + Delta-G solvation = -3974.248445 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.42061 -40.69225 -39.10027 -37.88582 -35.86894 -35.76755 -35.21148 -33.23621 -32.48974 -30.54561 -29.09223 -27.92147 -27.26874 -26.96788 -25.12642 -24.32322 -23.10966 -21.04101 -20.14655 -20.07994 -18.78903 -18.31632 -17.81645 -17.60060 -16.87080 -16.74767 -16.58592 -16.46798 -15.80753 -15.65743 -15.30296 -15.01177 -14.72223 -14.64078 -14.56105 -14.38808 -14.04646 -13.83281 -13.55116 -13.51018 -13.48744 -13.40783 -13.12915 -12.97193 -12.90723 -12.81767 -12.64402 -12.60181 -12.38843 -12.24860 -12.06511 -11.99443 -11.93273 -11.87244 -11.68133 -11.48281 -11.04029 -10.73423 -10.60567 -10.29793 -9.94727 -9.58289 -8.16416 -6.26468 1.38753 1.41291 1.53826 1.70736 1.75314 1.84950 1.90339 2.12618 2.32489 2.46965 3.10944 3.13304 3.54133 3.54680 3.71723 3.80952 4.00681 4.04921 4.16527 4.23855 4.35726 4.38950 4.41668 4.56175 4.73016 4.76528 4.78090 4.82063 4.86696 4.87189 4.89675 4.91820 4.94509 4.98015 5.02955 5.10914 5.11640 5.14172 5.26354 5.35578 5.37581 5.46701 5.54016 5.57772 5.71218 5.91833 6.19326 6.61427 6.65313 6.69057 6.81223 7.35079 7.38450 7.49660 8.89878 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024680 B = 0.002101 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.259175 B =13322.934835 C =13559.293041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.033 3.967 3 H 0.042 0.958 4 C -0.528 4.528 5 H 0.042 0.958 6 C 0.022 3.978 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.280 1.280 10 H -0.276 1.276 11 H -0.271 1.271 12 C 0.541 3.459 13 O -0.594 6.594 14 N -0.630 5.630 15 C 0.093 3.907 16 C -0.113 4.113 17 C -0.073 4.073 18 C -0.137 4.137 19 C 0.144 3.856 20 N -0.713 5.713 21 C 0.525 3.475 22 O -0.574 6.574 23 C -0.098 4.098 24 H 0.125 0.875 25 C -0.150 4.150 26 C -0.008 4.008 27 C 0.240 3.760 28 N -0.496 5.496 29 C 0.107 3.893 30 H 0.017 0.983 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.266 0.734 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.037 0.963 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.414 0.586 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.127 0.873 48 H 0.128 0.872 49 H 0.087 0.913 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.403 9.255 21.402 24.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.012 3.988 3 H 0.060 0.940 4 C -0.566 4.566 5 H 0.060 0.940 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.780 3.220 9 H -0.205 1.205 10 H -0.201 1.201 11 H -0.197 1.197 12 C 0.333 3.667 13 O -0.474 6.474 14 N -0.364 5.364 15 C -0.030 4.030 16 C -0.151 4.151 17 C -0.075 4.075 18 C -0.194 4.194 19 C 0.019 3.981 20 N -0.365 5.365 21 C 0.312 3.688 22 O -0.453 6.453 23 C -0.121 4.121 24 H 0.143 0.857 25 C -0.208 4.208 26 C -0.048 4.048 27 C -0.077 4.077 28 N -0.173 5.173 29 C -0.016 4.016 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.252 0.748 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.145 0.855 48 H 0.146 0.854 49 H 0.105 0.895 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.975 9.525 22.212 25.154 hybrid contribution 0.154 -0.951 -1.547 1.822 sum 7.129 8.574 20.665 23.481 Atomic orbital electron populations 1.21473 0.95414 0.99638 1.00595 1.18753 0.94791 0.95998 0.89235 0.94041 1.21218 1.31882 1.12316 0.91194 0.93986 1.25571 0.95148 0.95717 1.01318 1.69956 1.37012 1.23418 1.24315 0.85559 0.78355 0.78621 0.79451 1.20514 1.20116 1.19654 1.21278 0.75020 0.86435 0.83977 1.90510 1.53005 1.18633 1.85264 1.49103 1.69188 1.09935 1.08156 1.22465 0.99116 0.98293 0.83088 1.22664 0.99637 0.91909 1.00900 1.21613 0.95708 0.95302 0.94842 1.21872 0.96909 1.00660 0.99958 1.21202 0.90047 0.97465 0.89363 1.45872 1.17702 1.43063 1.29899 1.20606 0.88654 0.78325 0.81249 1.90751 1.28374 1.52084 1.74080 1.21199 0.97983 0.97694 0.95212 0.85696 1.21896 1.02478 0.95375 1.01005 1.19256 0.90374 1.01210 0.93973 1.29465 0.93714 0.91597 0.92893 1.81309 1.12741 1.11129 1.12169 1.22559 0.99055 0.80184 0.99818 0.96341 0.93911 0.90847 0.92518 0.92319 0.90174 0.90078 0.87210 0.89696 0.94406 0.92132 0.90743 0.91277 0.74825 0.89845 0.91930 0.91208 0.85467 0.85389 0.89488 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.36 8.86 71.98 0.64 -4.72 16 2 C 0.03 1.67 2.26 -12.29 -0.03 1.65 16 3 H 0.04 2.09 6.61 -2.38 -0.02 2.07 16 4 C -0.53 -30.44 8.33 25.60 0.21 -30.22 16 5 H 0.04 2.60 7.05 -2.91 -0.02 2.58 16 6 C 0.02 1.22 5.30 84.65 0.45 1.67 16 7 N -0.91 -50.25 11.39 21.45 0.24 -50.01 16 8 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 9 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 C 0.54 25.05 7.00 87.66 0.61 25.67 16 13 O -0.59 -32.20 16.09 -3.04 -0.05 -32.24 16 14 N -0.63 -21.02 3.32 -807.95 -2.68 -23.69 16 15 C 0.09 2.29 7.07 86.53 0.61 2.90 16 16 C -0.11 -1.67 5.78 31.50 0.18 -1.49 16 17 C -0.07 -1.17 0.73 -51.27 -0.04 -1.20 16 18 C -0.14 -2.23 8.08 71.98 0.58 -1.65 16 19 C 0.14 1.81 4.32 86.38 0.37 2.18 16 20 N -0.71 -5.68 4.76 -463.05 -2.20 -7.88 16 21 C 0.52 5.24 7.15 87.66 0.63 5.86 16 22 O -0.57 -10.40 15.92 -3.04 -0.05 -10.45 16 23 C -0.10 -0.43 2.70 -11.54 -0.03 -0.46 16 24 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 25 C -0.15 -0.46 8.90 71.98 0.64 0.18 16 26 C -0.01 -0.04 4.53 28.79 0.13 0.09 16 27 C 0.24 2.75 14.40 89.44 1.29 4.04 16 28 N -0.50 -9.35 18.54 20.01 0.37 -8.98 16 29 C 0.11 2.64 5.98 86.53 0.52 3.16 16 30 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 3.73 6.25 -2.39 -0.01 3.71 16 33 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 34 H 0.06 1.70 7.85 -2.39 -0.02 1.68 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 1.16 7.71 -2.39 -0.02 1.14 16 37 H 0.11 0.97 7.49 -2.39 -0.02 0.95 16 38 H 0.08 0.83 6.96 -2.39 -0.02 0.81 16 39 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.00 8.12 -2.39 -0.02 0.98 16 42 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.41 1.40 6.49 -92.71 -0.60 0.80 16 44 H 0.08 0.03 7.56 -2.39 -0.02 0.02 16 45 H 0.06 0.30 7.38 -2.39 -0.02 0.28 16 46 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 47 H 0.13 0.61 7.95 -2.39 -0.02 0.59 16 48 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.09 1.86 7.85 -2.39 -0.02 1.84 16 50 H 0.07 2.11 6.33 -2.38 -0.02 2.10 16 Total: -1.00 -78.98 405.46 4.77 -74.20 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 0.34 Total: 4.95 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 6.77 Total: 7.64 kcal Atomic # 7 Polarization: -86.30 SS G_CDS: -4.27 Total: -90.56 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -0.10 Total: -42.69 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -78.98 4.77 -74.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645984730.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.459 kcal (2) G-P(sol) polarization free energy of solvation -78.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds