Wall clock time and date at job start Tue Mar 31 2020 19:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47051 * 2 1 4 4 C 1.53004 * 109.46600 * 119.99139 * 2 1 3 5 5 C 1.53003 * 109.47432 * 296.10824 * 4 2 1 6 6 N 1.46495 * 109.47228 * 185.25276 * 5 4 2 7 7 C 1.34780 * 120.00321 * 179.97438 * 6 5 4 8 8 O 1.21591 * 119.99200 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00044 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99859 * 180.02562 * 9 7 6 11 11 C 1.50694 * 109.47357 * 179.97438 * 10 9 7 12 12 C 1.38321 * 119.96726 * 270.02569 * 11 10 9 13 13 C 1.38282 * 120.14402 * 179.97438 * 12 11 10 14 14 C 1.38128 * 120.06272 * 359.67569 * 13 12 11 15 15 C 1.38853 * 119.92963 * 0.59910 * 14 13 12 16 16 O 1.35754 * 120.06859 * 179.70112 * 15 14 13 17 17 C 1.34826 * 117.00313 * 353.91193 * 16 15 14 18 18 H 1.08004 * 119.99765 * 5.04350 * 17 16 15 19 19 C 1.38645 * 120.00745 * 185.04051 * 17 16 15 20 20 N 1.31566 * 119.99889 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00731 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46724 * 59.99993 * 21 19 17 23 23 H 1.48493 * 109.47376 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47095 * 300.00693 * 21 19 17 25 25 C 1.38076 * 119.96871 * 89.99956 * 11 10 9 26 26 N 1.46897 * 109.47522 * 239.99293 * 2 1 3 27 27 C 1.46899 * 110.99971 * 64.17671 * 26 2 1 28 28 C 1.46894 * 110.99926 * 188.13286 * 26 2 1 29 29 H 1.08998 * 109.47553 * 300.00602 * 1 2 3 30 30 H 1.09005 * 109.47136 * 60.00671 * 1 2 3 31 31 H 1.09006 * 109.46957 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46615 * 176.11039 * 4 2 1 33 33 H 1.09004 * 109.47238 * 56.11334 * 4 2 1 34 34 H 1.08998 * 109.46793 * 65.25350 * 5 4 2 35 35 H 1.09002 * 109.46909 * 305.25913 * 5 4 2 36 36 H 0.97008 * 120.00160 * 0.02562 * 6 5 4 37 37 H 0.96996 * 120.00591 * 359.97438 * 9 7 6 38 38 H 1.09002 * 109.46911 * 59.99838 * 10 9 7 39 39 H 1.08994 * 109.47298 * 300.00377 * 10 9 7 40 40 H 1.08008 * 119.93130 * 359.97237 * 12 11 10 41 41 H 1.07990 * 119.97121 * 179.97438 * 13 12 11 42 42 H 1.08000 * 120.03444 * 180.31646 * 14 13 12 43 43 H 0.96999 * 120.00288 * 180.02562 * 20 19 17 44 44 H 1.08005 * 120.03101 * 0.04402 * 25 11 10 45 45 H 1.09002 * 109.47276 * 59.99774 * 27 26 2 46 46 H 1.09000 * 109.46950 * 180.02562 * 27 26 2 47 47 H 1.08998 * 109.47146 * 300.00282 * 27 26 2 48 48 H 1.08995 * 109.47262 * 66.15992 * 28 26 2 49 49 H 1.09008 * 109.47126 * 186.16035 * 28 26 2 50 50 H 1.09002 * 109.47391 * 306.15524 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6113 0.0546 2.4967 6 7 2.2040 -0.5648 3.6846 7 6 1.9634 -0.0473 4.9056 8 8 1.2540 0.9334 5.0211 9 7 2.5090 -0.6169 5.9983 10 6 2.2470 -0.0547 7.3256 11 6 2.9675 -0.8703 8.3679 12 6 2.3375 -1.9524 8.9556 13 6 2.9954 -2.7038 9.9120 14 6 4.2871 -2.3795 10.2786 15 6 4.9202 -1.2904 9.6947 16 8 6.1875 -0.9655 10.0573 17 6 6.7294 -1.6604 11.0776 18 1 6.1906 -2.4890 11.5130 19 6 7.9785 -1.3115 11.5680 20 7 8.6347 -0.3019 11.0380 21 14 8.7290 -2.2738 12.9822 22 1 8.8840 -3.6965 12.5856 23 1 10.0592 -1.7051 13.3171 24 1 7.8402 -2.1847 14.1684 25 6 4.2562 -0.5371 8.7350 26 7 2.0197 -0.6926 -1.1993 27 6 1.6321 0.0286 -2.4189 28 6 3.4752 -0.8825 -1.1401 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 3.1277 -0.7819 1.2153 33 1 1.6207 -1.7267 1.2851 34 1 0.5248 0.0356 2.5808 35 1 1.9516 1.0871 2.4171 36 1 2.7703 -1.3470 3.5924 37 1 3.0746 -1.3995 5.9063 38 1 1.1755 -0.0766 7.5244 39 1 2.6019 0.9753 7.3604 40 1 1.3294 -2.2111 8.6668 41 1 2.5007 -3.5478 10.3693 42 1 4.8024 -2.9697 11.0219 43 1 9.5087 -0.0579 11.3808 44 1 4.7476 0.3081 8.2760 45 1 2.0558 1.0326 -2.3976 46 1 2.0069 -0.5060 -3.2918 47 1 0.5453 0.0941 -2.4724 48 1 3.7194 -1.5682 -0.3288 49 1 3.8262 -1.2976 -2.0849 50 1 3.9599 0.0776 -0.9628 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649888634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:51 Heat of formation + Delta-G solvation = -30.997479 kcal Electronic energy + Delta-G solvation = -27535.573962 eV Core-core repulsion = 23563.609171 eV Total energy + Delta-G solvation = -3971.964791 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.04324 -39.13359 -38.76732 -36.87417 -35.40488 -34.38119 -32.61175 -32.32780 -30.74180 -29.46431 -29.06461 -27.45207 -25.86482 -25.20028 -24.77409 -22.90747 -21.71733 -21.04471 -20.79587 -20.25233 -18.50707 -17.62251 -17.10963 -16.71651 -16.05410 -15.75785 -15.47354 -15.23759 -15.12792 -14.80928 -14.49109 -14.40676 -14.26423 -14.08327 -13.69427 -13.60860 -13.39969 -12.93928 -12.74499 -12.69091 -12.39012 -12.27550 -12.26257 -12.09594 -11.94161 -11.67845 -11.58539 -11.37675 -11.27339 -11.01569 -10.93134 -10.82588 -10.70983 -10.50156 -10.18057 -9.42257 -9.28750 -8.89603 -8.79257 -8.74135 -8.25673 -7.33670 -6.49664 -4.09418 1.86464 2.26139 2.82472 3.09801 3.11343 3.13997 3.27293 3.48315 3.92002 4.21716 4.45982 4.48169 4.57616 4.68483 4.79537 4.94032 4.96979 4.99006 5.03594 5.06558 5.12271 5.23834 5.27529 5.29098 5.39910 5.44580 5.53946 5.54331 5.57776 5.67587 5.77473 5.79687 5.85234 5.93138 5.94633 6.07114 6.24849 6.37164 6.55170 6.57097 6.58652 6.62679 6.81415 6.92223 7.00091 7.19037 7.26895 7.35017 7.70397 7.94216 8.04971 8.64304 8.95492 9.64135 10.67968 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.001710 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.756246 B =16369.499295 C =17363.558248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.084 3.916 3 H 0.045 0.955 4 C -0.130 4.130 5 C 0.141 3.859 6 N -0.750 5.750 7 C 0.703 3.297 8 O -0.596 6.596 9 N -0.736 5.736 10 C 0.187 3.813 11 C -0.073 4.073 12 C -0.194 4.194 13 C -0.077 4.077 14 C -0.226 4.226 15 C 0.150 3.850 16 O -0.176 6.176 17 C -0.394 4.394 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.170 4.170 26 N -0.543 5.543 27 C 0.021 3.979 28 C 0.019 3.981 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.396 0.604 37 H 0.399 0.601 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.127 0.873 43 H 0.271 0.729 44 H 0.118 0.882 45 H 0.025 0.975 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.067 0.933 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.565 -2.923 -21.029 24.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 H 0.063 0.937 4 C -0.168 4.168 5 C 0.016 3.984 6 N -0.406 5.406 7 C 0.403 3.597 8 O -0.474 6.474 9 N -0.391 5.391 10 C 0.064 3.936 11 C -0.074 4.074 12 C -0.213 4.213 13 C -0.095 4.095 14 C -0.245 4.245 15 C 0.096 3.904 16 O -0.080 6.080 17 C -0.470 4.470 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.190 4.190 26 N -0.268 5.268 27 C -0.127 4.127 28 C -0.129 4.129 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.230 0.770 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.145 0.855 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.085 0.915 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -13.052 -2.149 -20.980 24.802 hybrid contribution 1.395 -0.504 0.707 1.643 sum -11.658 -2.653 -20.273 23.536 Atomic orbital electron populations 1.21952 0.93871 1.02858 1.02037 1.21571 0.96150 0.95501 0.89226 0.93714 1.21933 1.01781 1.00403 0.92663 1.21155 0.98328 0.96578 0.82356 1.45083 1.55696 1.34660 1.05156 1.15941 0.80568 0.82827 0.80379 1.90914 1.42932 1.27875 1.85727 1.45252 1.54264 1.34191 1.05410 1.19992 0.99159 0.96199 0.78298 1.19285 0.93906 0.96568 0.97599 1.20489 1.00081 0.98655 1.02124 1.20748 0.94159 0.98260 0.96319 1.21241 0.96519 1.00888 1.05869 1.19328 0.85715 0.92339 0.93028 1.83980 1.21121 1.55874 1.47002 1.21273 1.01781 1.13453 1.10482 0.89098 1.25293 0.95732 0.96758 0.98671 1.70029 1.13601 1.25687 1.40268 0.85777 0.78470 0.79152 0.80017 1.19497 1.20253 1.19464 1.20096 0.94467 1.02434 1.01970 1.62037 1.12982 1.49603 1.02129 1.22435 1.01750 0.96231 0.92264 1.22466 0.87215 1.00453 1.02814 0.91552 0.92528 0.91588 0.90851 0.90216 0.91343 0.91873 0.77034 0.76743 0.91129 0.91042 0.87481 0.87290 0.85487 0.91904 0.86393 0.95645 0.91372 0.90993 0.90811 0.91464 0.95456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.81 37.16 0.33 -0.63 16 2 C 0.08 0.58 2.15 -67.71 -0.15 0.43 16 3 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 4 C -0.13 -0.88 4.44 -26.73 -0.12 -1.00 16 5 C 0.14 1.27 5.27 -4.04 -0.02 1.25 16 6 N -0.75 -7.62 5.56 -65.23 -0.36 -7.99 16 7 C 0.70 9.90 8.57 -86.92 -0.74 9.16 16 8 O -0.60 -10.73 16.34 5.29 0.09 -10.64 16 9 N -0.74 -9.77 5.55 -66.42 -0.37 -10.14 16 10 C 0.19 2.79 5.80 -5.19 -0.03 2.76 16 11 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 12 C -0.19 -3.15 9.70 -39.53 -0.38 -3.54 16 13 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 14 C -0.23 -4.68 9.17 -39.39 -0.36 -5.04 16 15 C 0.15 3.48 6.65 -39.11 -0.26 3.22 16 16 O -0.18 -4.91 9.76 0.05 0.00 -4.91 16 17 C -0.39 -10.75 9.49 30.88 0.29 -10.46 16 18 H 0.09 2.28 5.21 -52.48 -0.27 2.01 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -24.87 13.67 55.48 0.76 -24.11 16 21 Si 0.94 20.11 29.55 -169.99 -5.02 15.08 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 C -0.17 -3.42 9.65 -39.40 -0.38 -3.80 16 26 N -0.54 -3.80 4.89 -243.18 -1.19 -4.99 16 27 C 0.02 0.12 9.29 60.06 0.56 0.68 16 28 C 0.02 0.12 8.81 60.06 0.53 0.64 16 29 H 0.07 0.43 6.65 -51.93 -0.35 0.09 16 30 H 0.06 0.33 6.50 -51.93 -0.34 -0.01 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.48 6.22 -51.92 -0.32 0.15 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.66 6.80 -51.93 -0.35 0.31 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.40 3.03 8.49 -40.82 -0.35 2.68 16 37 H 0.40 4.62 8.48 -40.82 -0.35 4.27 16 38 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 39 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 40 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.13 2.64 5.65 -52.49 -0.30 2.34 16 43 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 45 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 46 H 0.07 0.35 8.05 -51.93 -0.42 -0.07 16 47 H 0.07 0.38 6.41 -51.93 -0.33 0.05 16 48 H 0.07 0.44 6.51 -51.93 -0.34 0.10 16 49 H 0.07 0.37 8.01 -51.92 -0.42 -0.05 16 50 H 0.03 0.17 8.12 -51.93 -0.42 -0.25 16 LS Contribution 405.64 15.07 6.11 6.11 Total: -1.00 -32.53 405.64 -9.67 -42.20 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -7.90 Total: 8.20 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -1.78 Total: -8.83 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -1.16 Total: -47.23 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.09 Total: -15.54 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.53 -9.67 -42.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649888634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.201 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds