Wall clock time and date at job start Tue Mar 31 2020 19:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46893 * 2 1 4 4 C 1.50694 * 109.47124 * 120.00280 * 2 1 3 5 5 C 1.41266 * 126.70432 * 275.25956 * 4 2 1 6 6 C 1.36822 * 103.84775 * 180.09638 * 5 4 2 7 7 C 1.47512 * 126.94554 * 179.97438 * 6 5 4 8 8 O 1.21590 * 119.99837 * 353.05151 * 7 6 5 9 9 N 1.34767 * 120.00288 * 173.04129 * 7 6 5 10 10 C 1.46931 * 120.63147 * 353.61766 * 9 7 6 11 11 C 1.53195 * 108.77516 * 126.36245 * 10 9 7 12 12 C 1.53037 * 109.33644 * 54.62583 * 11 10 9 13 13 C 1.53046 * 109.53880 * 298.67791 * 12 11 10 14 14 C 1.46930 * 120.63370 * 173.59374 * 9 7 6 15 15 H 1.09002 * 109.58685 * 113.84997 * 14 9 7 16 16 C 1.52999 * 109.58263 * 353.42018 * 14 9 7 17 17 H 1.08997 * 109.47413 * 59.06041 * 16 14 9 18 18 C 1.53002 * 109.46882 * 179.05684 * 16 14 9 19 19 N 1.46505 * 109.47214 * 299.05214 * 16 14 9 20 20 C 1.36938 * 119.99532 * 154.99919 * 19 16 14 21 21 H 1.08002 * 120.00209 * 0.02562 * 20 19 16 22 22 C 1.38814 * 119.99684 * 180.02562 * 20 19 16 23 23 N 1.31621 * 119.99923 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00003 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47358 * 89.99685 * 24 22 20 26 26 H 1.48503 * 109.47363 * 210.00116 * 24 22 20 27 27 H 1.48507 * 109.46993 * 329.99777 * 24 22 20 28 28 O 1.34644 * 106.11065 * 359.67194 * 6 5 4 29 29 N 1.20881 * 111.46728 * 0.22298 * 28 6 5 30 30 H 1.09001 * 109.47327 * 299.99980 * 1 2 3 31 31 H 1.08999 * 109.47204 * 59.99734 * 1 2 3 32 32 H 1.09002 * 109.47063 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46949 * 240.00389 * 2 1 3 34 34 H 1.08997 * 109.46778 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.46934 * 299.99910 * 3 2 1 36 36 H 1.09003 * 109.47006 * 60.00424 * 3 2 1 37 37 H 1.08002 * 128.07738 * 359.97438 * 5 4 2 38 38 H 1.09000 * 109.58189 * 6.58277 * 10 9 7 39 39 H 1.09000 * 109.59092 * 246.15617 * 10 9 7 40 40 H 1.09004 * 109.49643 * 174.58697 * 11 10 9 41 41 H 1.08998 * 109.50155 * 294.65366 * 11 10 9 42 42 H 1.08997 * 109.46584 * 58.66666 * 12 11 10 43 43 H 1.08998 * 109.46257 * 178.62936 * 12 11 10 44 44 H 1.08997 * 109.46876 * 301.36830 * 13 12 11 45 45 H 1.09002 * 109.52106 * 181.30179 * 13 12 11 46 46 H 1.08998 * 109.47527 * 185.13507 * 18 16 14 47 47 H 1.08999 * 109.46918 * 305.13808 * 18 16 14 48 48 H 1.09009 * 109.47204 * 65.13758 * 18 16 14 49 49 H 0.96995 * 120.00123 * 335.00564 * 19 16 14 50 50 H 0.96997 * 119.99705 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.2159 -0.1491 2.5137 6 6 2.6842 -1.1931 3.2638 7 6 3.0465 -1.1653 4.6935 8 8 3.0607 -0.1096 5.2966 9 7 3.3615 -2.3100 5.3313 10 6 3.2146 -3.6073 4.6573 11 6 4.5459 -4.3606 4.7423 12 6 4.9800 -4.4587 6.2066 13 6 5.1827 -3.0525 6.7757 14 6 3.8587 -2.2844 6.7136 15 1 3.1307 -2.7574 7.3727 16 6 4.0852 -0.8357 7.1504 17 1 3.1483 -0.2835 7.0776 18 6 4.5806 -0.8109 8.5978 19 7 5.0873 -0.2144 6.2807 20 6 5.1012 1.1447 6.1145 21 1 4.3738 1.7587 6.6247 22 6 6.0503 1.7334 5.2900 23 7 6.9365 0.9850 4.6678 24 14 6.0699 3.5875 5.0637 25 1 6.9449 4.2027 6.0937 26 1 6.5900 3.9158 3.7121 27 1 4.6901 4.1180 5.2054 28 8 2.7412 -2.2528 2.4351 29 7 2.3770 -1.9621 1.3197 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.0317 0.8674 2.8286 38 1 2.9512 -3.4480 3.6117 39 1 2.4341 -4.1882 5.1486 40 1 4.4238 -5.3627 4.3312 41 1 5.3047 -3.8238 4.1731 42 1 4.2097 -4.9743 6.7800 43 1 5.9148 -5.0155 6.2717 44 1 5.9357 -2.5277 6.1877 45 1 5.5142 -3.1232 7.8116 46 1 4.6549 0.2216 8.9389 47 1 3.8786 -1.3532 9.2313 48 1 5.5612 -1.2837 8.6545 49 1 5.7407 -0.7658 5.8227 50 1 7.5994 1.3963 4.0915 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660466354.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:30 Heat of formation + Delta-G solvation = 73.379568 kcal Electronic energy + Delta-G solvation = -31683.168413 eV Core-core repulsion = 27715.729751 eV Total energy + Delta-G solvation = -3967.438663 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.72234 -40.11386 -37.03190 -36.50836 -35.24540 -32.70617 -32.26930 -32.17929 -31.20503 -29.63198 -28.04070 -27.29293 -25.50854 -24.09869 -23.89649 -23.40649 -22.62754 -21.39914 -20.35342 -19.95091 -18.66371 -17.44620 -17.20146 -16.89828 -16.11799 -15.64899 -14.72014 -14.66694 -14.49863 -14.30305 -14.17604 -13.94895 -13.69452 -13.59551 -13.31966 -13.19646 -13.02090 -12.63662 -12.31391 -12.27001 -12.12126 -11.80950 -11.65332 -11.51789 -11.40052 -11.36861 -11.11991 -10.86764 -10.74999 -10.69930 -10.64014 -10.54491 -10.30598 -10.13581 -9.89014 -9.81653 -9.39955 -9.31757 -8.78078 -8.48729 -8.06437 -6.64667 -5.54366 -2.77223 1.25709 2.32188 2.90779 3.48390 3.53782 3.59426 3.61079 3.72288 4.08492 4.54367 4.77683 4.85845 4.98312 5.03374 5.07644 5.11163 5.16961 5.26384 5.38305 5.42669 5.51644 5.53102 5.55234 5.67644 5.70452 5.72032 5.79238 5.81060 5.85893 5.89434 6.03053 6.07869 6.11511 6.12548 6.16377 6.20215 6.24476 6.30191 6.34599 6.42744 6.48837 6.59068 6.83653 6.98032 7.03455 7.34446 7.79606 7.96039 8.35031 8.63535 8.75476 9.75567 10.31943 10.68141 11.69611 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008602 B = 0.005959 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3254.221211 B = 4697.811165 C = 7061.358973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.015 4.015 3 C -0.148 4.148 4 C 0.020 3.980 5 C -0.157 4.157 6 C -0.057 4.057 7 C 0.588 3.412 8 O -0.428 6.428 9 N -0.602 5.602 10 C 0.099 3.901 11 C -0.134 4.134 12 C -0.117 4.117 13 C -0.133 4.133 14 C 0.148 3.852 15 H 0.067 0.933 16 C 0.164 3.836 17 H 0.084 0.916 18 C -0.168 4.168 19 N -0.709 5.709 20 C -0.182 4.182 21 H 0.066 0.934 22 C -0.027 4.027 23 N -0.944 5.944 24 Si 0.897 3.103 25 H -0.295 1.295 26 H -0.297 1.297 27 H -0.285 1.285 28 O 0.103 5.897 29 N -0.362 5.362 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.178 0.822 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.053 0.947 47 H 0.033 0.967 48 H 0.046 0.954 49 H 0.379 0.621 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.572 -10.049 -3.617 15.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.034 4.034 3 C -0.205 4.205 4 C -0.138 4.138 5 C -0.180 4.180 6 C -0.123 4.123 7 C 0.371 3.629 8 O -0.296 6.296 9 N -0.338 5.338 10 C -0.025 4.025 11 C -0.172 4.172 12 C -0.155 4.155 13 C -0.171 4.171 14 C 0.045 3.955 15 H 0.085 0.915 16 C 0.055 3.945 17 H 0.102 0.898 18 C -0.229 4.229 19 N -0.352 5.352 20 C -0.314 4.314 21 H 0.084 0.916 22 C -0.220 4.220 23 N -0.596 5.596 24 Si 0.730 3.270 25 H -0.223 1.223 26 H -0.223 1.223 27 H -0.211 1.211 28 O 0.036 5.964 29 N -0.068 5.068 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.195 0.805 38 H 0.115 0.885 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.072 0.928 47 H 0.052 0.948 48 H 0.065 0.935 49 H 0.214 0.786 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.578 -10.242 -4.128 16.000 hybrid contribution 0.519 1.464 -0.074 1.555 sum -11.059 -8.778 -4.202 14.731 Atomic orbital electron populations 1.21821 0.93551 1.02182 1.02445 1.19500 0.95928 0.95565 0.92417 1.21866 1.01986 0.94152 1.02539 1.23481 1.02548 0.90598 0.97172 1.22708 1.02570 1.01276 0.91396 1.24789 1.04907 0.87712 0.94882 1.16677 0.79542 0.84647 0.82060 1.91060 1.46758 1.29560 1.62204 1.47698 1.66310 1.05208 1.14582 1.22055 0.97438 0.84299 0.98697 1.21893 0.97675 1.00135 0.97500 1.21518 1.00976 0.97335 0.95654 1.21998 0.98283 0.95021 1.01810 1.21644 0.94314 0.98983 0.80552 0.91463 1.20746 0.95703 0.89116 0.88975 0.89846 1.22567 1.00017 1.01222 0.99058 1.42445 1.34430 1.04704 1.53576 1.19084 1.09069 0.83233 1.20005 0.91590 1.24579 0.99358 0.96869 1.01233 1.69641 1.21002 1.33237 1.35699 0.86302 0.77133 0.86851 0.76746 1.22347 1.22339 1.21068 1.84984 1.63108 1.34289 1.13976 1.73612 1.15129 1.17284 1.00769 0.92071 0.91686 0.92512 0.89545 0.91917 0.91712 0.91766 0.80489 0.88505 0.91723 0.91230 0.91070 0.92329 0.92027 0.90240 0.90839 0.92813 0.94786 0.93452 0.78622 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.18 37.16 0.34 -1.04 16 2 C -0.01 -0.18 3.38 -91.77 -0.31 -0.49 16 3 C -0.15 -1.66 8.81 37.16 0.33 -1.33 16 4 C 0.02 0.31 6.20 -82.17 -0.51 -0.20 16 5 C -0.16 -2.66 10.14 -38.94 -0.39 -3.05 16 6 C -0.06 -1.03 6.96 -36.32 -0.25 -1.28 16 7 C 0.59 11.42 7.07 -12.48 -0.09 11.33 16 8 O -0.43 -9.70 10.04 5.29 0.05 -9.65 16 9 N -0.60 -9.94 2.96 -166.44 -0.49 -10.43 16 10 C 0.10 1.30 6.34 -3.71 -0.02 1.28 16 11 C -0.13 -1.66 6.08 -26.61 -0.16 -1.82 16 12 C -0.12 -1.41 5.89 -26.69 -0.16 -1.57 16 13 C -0.13 -2.00 4.79 -26.61 -0.13 -2.13 16 14 C 0.15 2.40 2.75 -67.60 -0.19 2.21 16 15 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 16 C 0.16 3.26 1.89 -67.93 -0.13 3.14 16 17 H 0.08 1.82 5.94 -52.02 -0.31 1.51 16 18 C -0.17 -3.00 9.04 37.16 0.34 -2.66 16 19 N -0.71 -17.41 3.41 -53.42 -0.18 -17.59 16 20 C -0.18 -5.08 8.05 -15.06 -0.12 -5.21 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.03 -0.79 5.50 -17.43 -0.10 -0.88 16 23 N -0.94 -29.07 13.06 55.49 0.72 -28.34 16 24 Si 0.90 23.37 29.55 -169.99 -5.02 18.34 16 25 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 26 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 27 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 28 O 0.10 1.71 7.82 15.55 0.12 1.83 16 29 N -0.36 -5.95 12.04 33.52 0.40 -5.54 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.73 7.49 -51.93 -0.39 0.34 16 37 H 0.18 2.90 7.66 -52.49 -0.40 2.50 16 38 H 0.10 1.34 3.87 -54.28 -0.21 1.13 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.48 6.27 -51.93 -0.33 1.15 16 45 H 0.07 1.03 6.91 -51.93 -0.36 0.67 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.05 0.84 6.89 -51.92 -0.36 0.48 16 49 H 0.38 9.98 5.90 -40.82 -0.24 9.74 16 50 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 383.34 15.07 5.78 5.78 Total: -1.00 -32.11 383.34 -8.23 -40.34 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -8.06 Total: 8.97 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -1.55 Total: -3.71 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: 0.45 Total: -61.90 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: 0.17 Total: -7.82 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.34 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.11 -8.23 -40.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660466354.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.718 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds