Wall clock time and date at job start Tue Mar 31 2020 19:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46893 * 2 1 4 4 C 1.50694 * 109.47124 * 120.00280 * 2 1 3 5 5 C 1.41266 * 126.70432 * 275.25956 * 4 2 1 6 6 C 1.36822 * 103.84775 * 180.09638 * 5 4 2 7 7 C 1.47512 * 126.94554 * 179.97438 * 6 5 4 8 8 O 1.21590 * 119.99837 * 353.05151 * 7 6 5 9 9 N 1.34767 * 120.00288 * 173.04129 * 7 6 5 10 10 C 1.46931 * 120.63147 * 353.61766 * 9 7 6 11 11 C 1.53195 * 108.77516 * 126.36245 * 10 9 7 12 12 C 1.53037 * 109.33644 * 54.62583 * 11 10 9 13 13 C 1.53046 * 109.53880 * 298.67791 * 12 11 10 14 14 C 1.46930 * 120.63370 * 173.59374 * 9 7 6 15 15 H 1.09002 * 109.58685 * 113.84997 * 14 9 7 16 16 C 1.52999 * 109.58263 * 353.42018 * 14 9 7 17 17 H 1.08997 * 109.47413 * 59.06041 * 16 14 9 18 18 C 1.53002 * 109.46882 * 179.05684 * 16 14 9 19 19 N 1.46505 * 109.47214 * 299.05214 * 16 14 9 20 20 C 1.36938 * 119.99532 * 154.99919 * 19 16 14 21 21 H 1.08002 * 120.00209 * 0.02562 * 20 19 16 22 22 C 1.38814 * 119.99684 * 180.02562 * 20 19 16 23 23 N 1.31621 * 119.99923 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00003 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47358 * 89.99685 * 24 22 20 26 26 H 1.48503 * 109.47363 * 210.00116 * 24 22 20 27 27 H 1.48507 * 109.46993 * 329.99777 * 24 22 20 28 28 O 1.34644 * 106.11065 * 359.67194 * 6 5 4 29 29 N 1.20881 * 111.46728 * 0.22298 * 28 6 5 30 30 H 1.09001 * 109.47327 * 299.99980 * 1 2 3 31 31 H 1.08999 * 109.47204 * 59.99734 * 1 2 3 32 32 H 1.09002 * 109.47063 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46949 * 240.00389 * 2 1 3 34 34 H 1.08997 * 109.46778 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.46934 * 299.99910 * 3 2 1 36 36 H 1.09003 * 109.47006 * 60.00424 * 3 2 1 37 37 H 1.08002 * 128.07738 * 359.97438 * 5 4 2 38 38 H 1.09000 * 109.58189 * 6.58277 * 10 9 7 39 39 H 1.09000 * 109.59092 * 246.15617 * 10 9 7 40 40 H 1.09004 * 109.49643 * 174.58697 * 11 10 9 41 41 H 1.08998 * 109.50155 * 294.65366 * 11 10 9 42 42 H 1.08997 * 109.46584 * 58.66666 * 12 11 10 43 43 H 1.08998 * 109.46257 * 178.62936 * 12 11 10 44 44 H 1.08997 * 109.46876 * 301.36830 * 13 12 11 45 45 H 1.09002 * 109.52106 * 181.30179 * 13 12 11 46 46 H 1.08998 * 109.47527 * 185.13507 * 18 16 14 47 47 H 1.08999 * 109.46918 * 305.13808 * 18 16 14 48 48 H 1.09009 * 109.47204 * 65.13758 * 18 16 14 49 49 H 0.96995 * 120.00123 * 335.00564 * 19 16 14 50 50 H 0.96997 * 119.99705 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.2159 -0.1491 2.5137 6 6 2.6842 -1.1931 3.2638 7 6 3.0465 -1.1653 4.6935 8 8 3.0607 -0.1096 5.2966 9 7 3.3615 -2.3100 5.3313 10 6 3.2146 -3.6073 4.6573 11 6 4.5459 -4.3606 4.7423 12 6 4.9800 -4.4587 6.2066 13 6 5.1827 -3.0525 6.7757 14 6 3.8587 -2.2844 6.7136 15 1 3.1307 -2.7574 7.3727 16 6 4.0852 -0.8357 7.1504 17 1 3.1483 -0.2835 7.0776 18 6 4.5806 -0.8109 8.5978 19 7 5.0873 -0.2144 6.2807 20 6 5.1012 1.1447 6.1145 21 1 4.3738 1.7587 6.6247 22 6 6.0503 1.7334 5.2900 23 7 6.9365 0.9850 4.6678 24 14 6.0699 3.5875 5.0637 25 1 6.9449 4.2027 6.0937 26 1 6.5900 3.9158 3.7121 27 1 4.6901 4.1180 5.2054 28 8 2.7412 -2.2528 2.4351 29 7 2.3770 -1.9621 1.3197 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.0317 0.8674 2.8286 38 1 2.9512 -3.4480 3.6117 39 1 2.4341 -4.1882 5.1486 40 1 4.4238 -5.3627 4.3312 41 1 5.3047 -3.8238 4.1731 42 1 4.2097 -4.9743 6.7800 43 1 5.9148 -5.0155 6.2717 44 1 5.9357 -2.5277 6.1877 45 1 5.5142 -3.1232 7.8116 46 1 4.6549 0.2216 8.9389 47 1 3.8786 -1.3532 9.2313 48 1 5.5612 -1.2837 8.6545 49 1 5.7407 -0.7658 5.8227 50 1 7.5994 1.3963 4.0915 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660466354.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:29 Heat of formation + Delta-G solvation = 54.189207 kcal Electronic energy + Delta-G solvation = -31684.000570 eV Core-core repulsion = 27715.729751 eV Total energy + Delta-G solvation = -3968.270819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -46.02126 -41.51850 -38.39652 -37.58215 -36.88096 -34.25839 -33.82546 -33.43926 -32.54370 -31.25371 -29.66161 -28.14196 -26.83934 -25.79732 -25.23029 -24.74787 -24.04665 -22.61586 -21.63696 -21.25589 -19.95651 -19.11201 -18.75763 -18.36275 -17.38162 -17.13734 -16.34733 -16.01455 -15.81707 -15.68531 -15.50325 -15.30287 -15.10660 -14.87884 -14.58644 -14.45726 -14.18805 -14.09267 -13.86313 -13.51970 -13.20574 -13.09223 -13.03461 -12.83085 -12.77975 -12.63521 -12.52337 -12.33363 -12.30053 -12.14167 -11.94411 -11.81998 -11.71750 -11.59622 -11.35389 -11.28721 -11.07804 -10.89384 -10.62942 -10.05235 -9.47784 -8.66984 -7.78068 -4.97705 -0.13628 1.05038 1.43409 1.43953 1.52180 1.53434 2.18539 2.26691 2.65341 2.93766 3.33364 3.56617 3.70634 3.91371 3.98121 3.98589 4.05651 4.10664 4.11022 4.14487 4.23801 4.26415 4.39527 4.43643 4.48774 4.64013 4.73843 4.79608 4.83376 4.87966 4.89463 4.91468 4.95627 4.97486 5.04138 5.10579 5.12466 5.15249 5.29219 5.29333 5.30269 5.31023 5.47560 5.53677 5.60587 5.68161 5.87765 6.41818 6.44773 7.01953 7.29975 7.51780 8.29518 8.53053 9.46584 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008602 B = 0.005959 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3254.221211 B = 4697.811165 C = 7061.358973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.016 4.016 3 C -0.146 4.146 4 C 0.029 3.971 5 C -0.166 4.166 6 C -0.074 4.074 7 C 0.581 3.419 8 O -0.476 6.476 9 N -0.598 5.598 10 C 0.094 3.906 11 C -0.131 4.131 12 C -0.109 4.109 13 C -0.127 4.127 14 C 0.150 3.850 15 H 0.104 0.896 16 C 0.158 3.842 17 H 0.064 0.936 18 C -0.158 4.158 19 N -0.712 5.712 20 C -0.161 4.161 21 H 0.057 0.943 22 C -0.091 4.091 23 N -0.979 5.979 24 Si 0.950 3.050 25 H -0.294 1.294 26 H -0.303 1.303 27 H -0.278 1.278 28 O 0.105 5.895 29 N -0.372 5.372 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.176 0.824 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.037 0.963 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.035 0.965 45 H 0.087 0.913 46 H 0.030 0.970 47 H 0.073 0.927 48 H 0.046 0.954 49 H 0.368 0.632 50 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.376 -11.975 -3.407 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.035 4.035 3 C -0.204 4.204 4 C -0.130 4.130 5 C -0.188 4.188 6 C -0.140 4.140 7 C 0.365 3.635 8 O -0.348 6.348 9 N -0.332 5.332 10 C -0.028 4.028 11 C -0.169 4.169 12 C -0.147 4.147 13 C -0.166 4.166 14 C 0.047 3.953 15 H 0.122 0.878 16 C 0.050 3.950 17 H 0.082 0.918 18 C -0.218 4.218 19 N -0.352 5.352 20 C -0.294 4.294 21 H 0.075 0.925 22 C -0.280 4.280 23 N -0.634 5.634 24 Si 0.783 3.217 25 H -0.222 1.222 26 H -0.231 1.231 27 H -0.204 1.204 28 O 0.040 5.960 29 N -0.079 5.079 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.060 0.940 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.193 0.807 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.056 0.944 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.054 0.946 45 H 0.105 0.895 46 H 0.049 0.951 47 H 0.092 0.908 48 H 0.065 0.935 49 H 0.201 0.799 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -13.417 -12.225 -3.872 18.560 hybrid contribution 0.975 1.977 -0.118 2.207 sum -12.442 -10.248 -3.990 16.606 Atomic orbital electron populations 1.21798 0.91537 1.02450 1.03625 1.19723 0.97498 0.95387 0.90926 1.21876 1.00652 0.94116 1.03765 1.24010 1.01192 0.90095 0.97715 1.22887 1.02483 1.01187 0.92292 1.24712 1.05820 0.88601 0.94848 1.16962 0.79103 0.84919 0.82515 1.91026 1.49336 1.31153 1.63289 1.47853 1.64830 1.05724 1.14803 1.22329 0.99040 0.82957 0.98465 1.21891 0.96044 1.01170 0.97784 1.21500 1.02630 0.95341 0.95213 1.21936 0.96172 0.96384 1.02091 1.21691 0.95991 0.96686 0.80903 0.87791 1.20878 0.93600 0.91160 0.89353 0.91795 1.22395 1.00982 1.00462 0.97959 1.42535 1.35035 1.03519 1.54120 1.19235 1.07309 0.84863 1.17973 0.92453 1.25164 1.00146 1.00270 1.02459 1.69791 1.22098 1.34274 1.37273 0.85419 0.77161 0.83053 0.76079 1.22170 1.23073 1.20360 1.85015 1.63343 1.33718 1.13886 1.73579 1.15682 1.17921 1.00712 0.92360 0.89060 0.92690 0.88682 0.93984 0.88815 0.92248 0.80664 0.89243 0.88214 0.87996 0.94376 0.89267 0.90908 0.94594 0.89480 0.95062 0.90801 0.93510 0.79868 0.95190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.18 71.98 0.66 -1.71 16 2 C -0.02 -0.36 3.38 -11.54 -0.04 -0.40 16 3 C -0.15 -3.17 8.81 71.98 0.63 -2.53 16 4 C 0.03 0.87 6.20 43.55 0.27 1.14 16 5 C -0.17 -5.79 10.14 22.68 0.23 -5.56 16 6 C -0.07 -2.74 6.96 24.39 0.17 -2.57 16 7 C 0.58 23.14 7.07 86.69 0.61 23.75 16 8 O -0.48 -22.43 10.04 -4.00 -0.04 -22.47 16 9 N -0.60 -19.28 2.96 -798.76 -2.37 -21.65 16 10 C 0.09 2.29 6.34 86.36 0.55 2.84 16 11 C -0.13 -2.95 6.08 30.67 0.19 -2.76 16 12 C -0.11 -2.27 5.89 30.62 0.18 -2.09 16 13 C -0.13 -3.63 4.79 30.68 0.15 -3.48 16 14 C 0.15 4.60 2.75 44.97 0.12 4.72 16 15 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 16 C 0.16 6.28 1.89 44.99 0.08 6.36 16 17 H 0.06 2.84 5.94 -3.83 -0.02 2.81 16 18 C -0.16 -5.45 9.04 71.98 0.65 -4.80 16 19 N -0.71 -36.02 3.41 -322.93 -1.10 -37.13 16 20 C -0.16 -9.27 8.05 84.03 0.68 -8.60 16 21 H 0.06 3.36 7.83 -2.91 -0.02 3.34 16 22 C -0.09 -5.49 5.50 84.86 0.47 -5.02 16 23 N -0.98 -62.75 13.06 21.65 0.28 -62.47 16 24 Si 0.95 49.67 29.55 68.60 2.03 51.70 16 25 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 26 H -0.30 -16.05 7.11 99.48 0.71 -15.34 16 27 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 28 O 0.11 3.52 7.82 65.81 0.51 4.04 16 29 N -0.37 -12.16 12.04 -48.86 -0.59 -12.74 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.33 7.49 -2.39 -0.02 1.31 16 37 H 0.18 6.05 7.66 -2.91 -0.02 6.02 16 38 H 0.09 2.37 3.87 -39.62 -0.15 2.22 16 39 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.04 1.35 6.27 -2.39 -0.01 1.34 16 45 H 0.09 2.23 6.91 -2.39 -0.02 2.21 16 46 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.05 1.61 6.89 -2.38 -0.02 1.59 16 49 H 0.37 20.22 5.90 -92.71 -0.55 19.67 16 50 H 0.24 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -73.68 383.34 4.57 -69.10 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.24 Total: 32.35 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 5.60 Total: -0.72 kcal Atomic # 7 Polarization: -130.21 SS G_CDS: -3.77 Total: -133.99 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.47 Total: -18.44 kcal Atomic # 14 Polarization: 49.67 SS G_CDS: 2.03 Total: 51.70 kcal Total: -73.68 4.57 -69.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660466354.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.290 kcal (2) G-P(sol) polarization free energy of solvation -73.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds