Wall clock time and date at job start Tue Mar 31 2020 19:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21606 * 120.00433 * 0.02562 * 7 6 5 9 9 C 1.47428 * 119.99764 * 180.02562 * 7 6 5 10 10 C 1.36085 * 126.44881 * 180.02562 * 9 7 6 11 11 O 1.34260 * 106.94825 * 179.97438 * 10 9 7 12 12 C 1.34046 * 108.22871 * 359.97438 * 11 10 9 13 13 C 1.50698 * 125.38182 * 179.97438 * 12 11 10 14 14 C 1.52991 * 109.47350 * 60.01421 * 13 12 11 15 15 C 1.53006 * 109.47321 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.46942 * 60.00339 * 15 14 13 17 17 C 1.53003 * 109.47112 * 300.00056 * 16 15 14 18 18 C 1.52998 * 109.47125 * 59.99943 * 17 16 15 19 19 N 1.29941 * 109.24411 * 359.74060 * 12 11 10 20 20 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 21 21 C 1.36933 * 120.00376 * 275.00368 * 20 2 1 22 22 H 1.07998 * 120.00056 * 0.02562 * 21 20 2 23 23 C 1.38820 * 120.00147 * 180.02562 * 21 20 2 24 24 N 1.31619 * 119.99690 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99941 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47553 * 59.99685 * 25 23 21 27 27 H 1.48501 * 109.46788 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47159 * 299.99543 * 25 23 21 29 29 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 30 30 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 31 31 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 33 33 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 37 37 H 1.08002 * 126.52707 * 359.97438 * 10 9 7 38 38 H 1.08999 * 109.47221 * 180.02562 * 13 12 11 39 39 H 1.08999 * 109.47562 * 300.00531 * 14 13 12 40 40 H 1.09005 * 109.46880 * 60.00404 * 14 13 12 41 41 H 1.08999 * 109.46928 * 300.00542 * 15 14 13 42 42 H 1.08998 * 109.47215 * 179.97438 * 15 14 13 43 43 H 1.08998 * 109.46845 * 180.02562 * 16 15 14 44 44 H 1.09004 * 109.47228 * 59.99859 * 16 15 14 45 45 H 1.08999 * 109.47345 * 300.00156 * 17 16 15 46 46 H 1.08998 * 109.46980 * 179.97438 * 17 16 15 47 47 H 1.09004 * 109.47402 * 180.02562 * 18 17 16 48 48 H 1.09004 * 109.47182 * 60.00217 * 18 17 16 49 49 H 0.97003 * 119.99849 * 95.00425 * 20 2 1 50 50 H 0.97004 * 120.00058 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0534 -1.3042 -2.5094 7 6 5.3742 -1.3396 -2.7749 8 8 6.1606 -0.7982 -2.0217 9 6 5.8657 -2.0345 -3.9786 10 6 7.1634 -2.1513 -4.3716 11 8 7.1645 -2.8566 -5.5140 12 6 5.8960 -3.1670 -5.8163 13 6 5.4542 -3.9544 -7.0229 14 6 6.0947 -5.3433 -6.9880 15 6 5.6466 -6.1426 -8.2133 16 6 6.0815 -5.4123 -9.4855 17 6 5.4410 -4.0233 -9.5204 18 6 5.8890 -3.2241 -8.2951 19 7 5.1078 -2.6859 -4.9021 20 7 2.0183 -0.6905 1.1962 21 6 2.1490 -0.0074 2.3758 22 1 1.8917 1.0404 2.4244 23 6 2.6122 -0.6616 3.5091 24 7 2.9262 -1.9384 3.4497 25 14 2.7898 0.2701 5.1183 26 1 1.4671 0.8059 5.5288 27 1 3.3001 -0.6480 6.1681 28 1 3.7443 1.3933 4.9373 29 1 -0.3635 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -0.2617 -2.1369 33 1 1.7517 -1.7714 -1.2056 34 1 3.9995 -1.0726 -0.4258 35 1 3.8532 0.4372 -1.3572 36 1 3.4261 -1.7357 -3.1104 37 1 8.0278 -1.7525 -3.8615 38 1 4.3688 -4.0544 -7.0140 39 1 7.1801 -5.2433 -6.9969 40 1 5.7852 -5.8635 -6.0814 41 1 4.5613 -6.2427 -8.2048 42 1 6.1034 -7.1320 -8.1887 43 1 5.7619 -5.9815 -10.3584 44 1 7.1669 -5.3122 -9.4940 45 1 4.3556 -4.1233 -9.5119 46 1 5.7512 -3.5028 -10.4265 47 1 5.4323 -2.2346 -8.3197 48 1 6.9744 -3.1239 -8.3036 49 1 2.2490 -1.6317 1.1527 50 1 3.2496 -2.3957 4.2417 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663019404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:07 Heat of formation + Delta-G solvation = -37.789520 kcal Electronic energy + Delta-G solvation = -28219.851713 eV Core-core repulsion = 24247.592397 eV Total energy + Delta-G solvation = -3972.259316 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.66844 -39.37572 -38.91254 -36.55203 -35.07510 -34.29135 -32.71913 -32.18218 -31.29349 -29.63849 -29.08283 -28.05382 -24.69495 -24.07097 -23.60950 -23.12157 -22.32547 -21.29065 -20.74993 -20.11178 -19.55723 -18.17396 -17.17482 -16.96275 -16.55459 -16.13001 -15.63303 -15.28666 -14.95878 -14.73040 -14.70205 -14.64709 -14.11300 -13.90867 -13.54619 -13.40343 -13.11595 -13.02004 -12.95917 -12.72815 -12.44724 -11.99963 -11.77653 -11.69015 -11.51494 -11.47905 -11.05936 -11.05102 -11.03071 -10.87444 -10.83234 -10.70480 -10.68353 -10.61132 -10.28818 -10.10719 -9.83165 -9.59200 -9.22673 -8.87587 -8.75168 -6.90823 -5.70588 -2.99207 0.96396 1.84021 2.33071 3.18028 3.36188 3.48721 3.53064 3.53899 3.55195 4.16518 4.21020 4.36794 4.59947 4.64712 4.70227 4.71297 4.78796 4.91299 4.92687 4.98235 5.10796 5.22433 5.33854 5.36733 5.44880 5.46061 5.53203 5.58156 5.60846 5.61743 5.62381 5.68681 5.73384 5.77561 5.87726 5.92104 5.93300 6.12223 6.21921 6.38556 6.43687 6.50767 6.69925 6.74621 6.90698 7.10547 7.24334 7.70186 7.75565 8.30928 8.47711 9.58879 10.15956 10.50645 11.51974 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.001914 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.155084 B =14623.617977 C =15067.903071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.121 3.879 6 N -0.708 5.708 7 C 0.595 3.405 8 O -0.534 6.534 9 C -0.066 4.066 10 C 0.008 3.992 11 O -0.194 6.194 12 C 0.201 3.799 13 C 0.011 3.989 14 C -0.117 4.117 15 C -0.118 4.118 16 C -0.123 4.123 17 C -0.118 4.118 18 C -0.116 4.116 19 N -0.459 5.459 20 N -0.723 5.723 21 C -0.237 4.237 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.286 1.286 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.405 0.595 37 H 0.231 0.769 38 H 0.115 0.885 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.071 0.929 49 H 0.383 0.617 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.151 -6.720 -30.073 31.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.171 4.171 5 C -0.001 4.001 6 N -0.358 5.358 7 C 0.379 3.621 8 O -0.411 6.411 9 C -0.186 4.186 10 C -0.066 4.066 11 O -0.080 6.080 12 C -0.009 4.009 13 C -0.008 4.008 14 C -0.155 4.155 15 C -0.155 4.155 16 C -0.161 4.161 17 C -0.155 4.155 18 C -0.155 4.155 19 N -0.188 5.188 20 N -0.365 5.365 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.213 1.213 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.239 0.761 37 H 0.247 0.753 38 H 0.133 0.867 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.067 -6.268 -29.347 30.616 hybrid contribution 0.571 0.089 0.879 1.052 sum 6.638 -6.179 -28.469 29.878 Atomic orbital electron populations 1.22420 0.99113 1.00848 0.99942 1.20152 0.91896 0.95569 0.85990 0.93260 1.22059 0.93721 1.01940 0.99382 1.21535 0.94634 0.97168 0.86790 1.45922 1.06717 1.55837 1.27361 1.16737 0.83047 0.79558 0.82736 1.90859 1.55642 1.46207 1.48358 1.21926 0.91203 1.06226 0.99227 1.25320 1.00282 0.95383 0.85608 1.84357 1.32622 1.55207 1.35842 1.26258 0.76869 0.99451 0.98273 1.19849 1.02002 0.92672 0.86257 1.21647 1.01129 0.93475 0.99275 1.21525 1.01584 0.98661 0.93773 1.21592 1.00823 0.95898 0.97775 1.21524 1.00975 0.95676 0.97357 1.21644 1.02067 0.98974 0.92767 1.70778 1.33640 1.11914 1.02506 1.42449 1.78093 1.10658 1.05335 1.19180 1.36504 0.93827 0.87358 0.91256 1.24733 1.02220 0.95979 0.98053 1.69649 1.50879 1.08666 1.28922 0.86284 0.77693 0.78637 0.83672 1.21380 1.21788 1.21284 0.92724 0.94568 0.93516 0.91841 0.91510 0.89463 0.91561 0.76051 0.75267 0.86735 0.91029 0.91029 0.91423 0.91326 0.91695 0.91767 0.91437 0.91369 0.91129 0.91033 0.78280 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.49 37.16 0.35 -2.56 16 2 C 0.17 3.42 2.89 -67.94 -0.20 3.22 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 C -0.13 -2.13 4.87 -26.74 -0.13 -2.26 16 5 C 0.12 2.12 5.56 -4.04 -0.02 2.10 16 6 N -0.71 -11.00 5.55 -61.38 -0.34 -11.34 16 7 C 0.59 9.92 7.81 -12.52 -0.10 9.83 16 8 O -0.53 -10.64 16.89 5.27 0.09 -10.55 16 9 C -0.07 -0.91 6.99 -83.02 -0.58 -1.49 16 10 C 0.01 0.09 11.95 29.96 0.36 0.45 16 11 O -0.19 -2.03 10.73 6.51 0.07 -1.96 16 12 C 0.20 2.07 6.81 -13.08 -0.09 1.98 16 13 C 0.01 0.08 2.66 -91.77 -0.24 -0.16 16 14 C -0.12 -0.70 5.19 -26.73 -0.14 -0.84 16 15 C -0.12 -0.53 5.92 -26.73 -0.16 -0.69 16 16 C -0.12 -0.50 5.92 -26.73 -0.16 -0.66 16 17 C -0.12 -0.50 5.92 -26.73 -0.16 -0.66 16 18 C -0.12 -0.66 5.18 -26.73 -0.14 -0.80 16 19 N -0.46 -5.82 11.06 -7.65 -0.08 -5.90 16 20 N -0.72 -18.01 4.57 -53.43 -0.24 -18.25 16 21 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -28.62 13.06 55.49 0.72 -27.90 16 25 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.87 7.75 -51.93 -0.40 1.46 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.40 5.45 8.20 -40.82 -0.33 5.12 16 37 H 0.23 1.98 8.06 -52.49 -0.42 1.56 16 38 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.38 10.21 7.80 -40.82 -0.32 9.89 16 50 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 409.78 15.07 6.18 6.18 Total: -1.00 -33.45 409.78 -8.91 -42.36 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -8.63 Total: 9.34 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.65 Total: 0.17 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: 0.05 Total: -63.40 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.16 Total: -12.50 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.45 -8.91 -42.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663019404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.573 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds