Wall clock time and date at job start Tue Mar 31 2020 19:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21606 * 120.00433 * 0.02562 * 7 6 5 9 9 C 1.47428 * 119.99764 * 180.02562 * 7 6 5 10 10 C 1.36085 * 126.44881 * 180.02562 * 9 7 6 11 11 O 1.34260 * 106.94825 * 179.97438 * 10 9 7 12 12 C 1.34046 * 108.22871 * 359.97438 * 11 10 9 13 13 C 1.50698 * 125.38182 * 179.97438 * 12 11 10 14 14 C 1.52991 * 109.47350 * 60.01421 * 13 12 11 15 15 C 1.53006 * 109.47321 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.46942 * 60.00339 * 15 14 13 17 17 C 1.53003 * 109.47112 * 300.00056 * 16 15 14 18 18 C 1.52998 * 109.47125 * 59.99943 * 17 16 15 19 19 N 1.29941 * 109.24411 * 359.74060 * 12 11 10 20 20 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 21 21 C 1.36933 * 120.00376 * 275.00368 * 20 2 1 22 22 H 1.07998 * 120.00056 * 0.02562 * 21 20 2 23 23 C 1.38820 * 120.00147 * 180.02562 * 21 20 2 24 24 N 1.31619 * 119.99690 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99941 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47553 * 59.99685 * 25 23 21 27 27 H 1.48501 * 109.46788 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47159 * 299.99543 * 25 23 21 29 29 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 30 30 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 31 31 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 33 33 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 37 37 H 1.08002 * 126.52707 * 359.97438 * 10 9 7 38 38 H 1.08999 * 109.47221 * 180.02562 * 13 12 11 39 39 H 1.08999 * 109.47562 * 300.00531 * 14 13 12 40 40 H 1.09005 * 109.46880 * 60.00404 * 14 13 12 41 41 H 1.08999 * 109.46928 * 300.00542 * 15 14 13 42 42 H 1.08998 * 109.47215 * 179.97438 * 15 14 13 43 43 H 1.08998 * 109.46845 * 180.02562 * 16 15 14 44 44 H 1.09004 * 109.47228 * 59.99859 * 16 15 14 45 45 H 1.08999 * 109.47345 * 300.00156 * 17 16 15 46 46 H 1.08998 * 109.46980 * 179.97438 * 17 16 15 47 47 H 1.09004 * 109.47402 * 180.02562 * 18 17 16 48 48 H 1.09004 * 109.47182 * 60.00217 * 18 17 16 49 49 H 0.97003 * 119.99849 * 95.00425 * 20 2 1 50 50 H 0.97004 * 120.00058 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0534 -1.3042 -2.5094 7 6 5.3742 -1.3396 -2.7749 8 8 6.1606 -0.7982 -2.0217 9 6 5.8657 -2.0345 -3.9786 10 6 7.1634 -2.1513 -4.3716 11 8 7.1645 -2.8566 -5.5140 12 6 5.8960 -3.1670 -5.8163 13 6 5.4542 -3.9544 -7.0229 14 6 6.0947 -5.3433 -6.9880 15 6 5.6466 -6.1426 -8.2133 16 6 6.0815 -5.4123 -9.4855 17 6 5.4410 -4.0233 -9.5204 18 6 5.8890 -3.2241 -8.2951 19 7 5.1078 -2.6859 -4.9021 20 7 2.0183 -0.6905 1.1962 21 6 2.1490 -0.0074 2.3758 22 1 1.8917 1.0404 2.4244 23 6 2.6122 -0.6616 3.5091 24 7 2.9262 -1.9384 3.4497 25 14 2.7898 0.2701 5.1183 26 1 1.4671 0.8059 5.5288 27 1 3.3001 -0.6480 6.1681 28 1 3.7443 1.3933 4.9373 29 1 -0.3635 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -0.2617 -2.1369 33 1 1.7517 -1.7714 -1.2056 34 1 3.9995 -1.0726 -0.4258 35 1 3.8532 0.4372 -1.3572 36 1 3.4261 -1.7357 -3.1104 37 1 8.0278 -1.7525 -3.8615 38 1 4.3688 -4.0544 -7.0140 39 1 7.1801 -5.2433 -6.9969 40 1 5.7852 -5.8635 -6.0814 41 1 4.5613 -6.2427 -8.2048 42 1 6.1034 -7.1320 -8.1887 43 1 5.7619 -5.9815 -10.3584 44 1 7.1669 -5.3122 -9.4940 45 1 4.3556 -4.1233 -9.5119 46 1 5.7512 -3.5028 -10.4265 47 1 5.4323 -2.2346 -8.3197 48 1 6.9744 -3.1239 -8.3036 49 1 2.2490 -1.6317 1.1527 50 1 3.2496 -2.3957 4.2417 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663019404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:06 Heat of formation + Delta-G solvation = -61.387215 kcal Electronic energy + Delta-G solvation = -28220.874986 eV Core-core repulsion = 24247.592397 eV Total energy + Delta-G solvation = -3973.282589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.57152 -40.69314 -39.39032 -38.16918 -36.10745 -35.78953 -34.12851 -33.31725 -31.69261 -31.15193 -30.24363 -29.52776 -26.10484 -25.43302 -24.67456 -23.62237 -23.52096 -22.21921 -21.80729 -21.25384 -20.49706 -19.38393 -19.04633 -17.87169 -17.58185 -17.11046 -16.90212 -16.53851 -16.37116 -15.65624 -15.56992 -15.39710 -15.32970 -15.09924 -14.94824 -14.56929 -14.54652 -14.13888 -13.58530 -13.56533 -13.51231 -13.25623 -13.12901 -12.79245 -12.64382 -12.48878 -12.32697 -12.27383 -12.21853 -12.14510 -12.02944 -11.99091 -11.73651 -11.60577 -11.41857 -11.33907 -11.18907 -11.12076 -10.92711 -10.30765 -10.00568 -8.97776 -7.91669 -5.18775 -0.00517 0.86899 1.46058 1.48455 1.49406 1.54829 1.99728 2.14882 2.57690 2.67754 3.42003 3.56980 3.64415 3.76359 3.81680 3.89644 3.96369 4.03460 4.20564 4.24482 4.30866 4.34277 4.41352 4.45258 4.53521 4.55827 4.58811 4.65322 4.70523 4.73053 4.84301 4.91074 4.99915 5.04428 5.08928 5.11739 5.15012 5.18145 5.25175 5.25302 5.33755 5.38514 5.39058 5.41169 5.54350 5.57851 5.60996 6.23106 6.30748 6.53285 7.03307 7.36601 8.14259 8.35974 9.31682 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.001914 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.155084 B =14623.617977 C =15067.903071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 H 0.046 0.954 4 C -0.116 4.116 5 C 0.132 3.868 6 N -0.698 5.698 7 C 0.593 3.407 8 O -0.575 6.575 9 C -0.097 4.097 10 C 0.027 3.973 11 O -0.189 6.189 12 C 0.210 3.790 13 C 0.012 3.988 14 C -0.114 4.114 15 C -0.115 4.115 16 C -0.122 4.122 17 C -0.115 4.115 18 C -0.112 4.112 19 N -0.478 5.478 20 N -0.735 5.735 21 C -0.233 4.233 22 H 0.075 0.925 23 C -0.080 4.080 24 N -0.970 5.970 25 Si 0.969 3.031 26 H -0.276 1.276 27 H -0.298 1.298 28 H -0.281 1.281 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.417 0.583 37 H 0.254 0.746 38 H 0.120 0.880 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.371 0.629 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.603 -6.553 -32.632 33.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.057 3.943 3 H 0.064 0.936 4 C -0.155 4.155 5 C 0.009 3.991 6 N -0.349 5.349 7 C 0.379 3.621 8 O -0.455 6.455 9 C -0.215 4.215 10 C -0.048 4.048 11 O -0.075 6.075 12 C 0.000 4.000 13 C -0.007 4.007 14 C -0.152 4.152 15 C -0.152 4.152 16 C -0.160 4.160 17 C -0.152 4.152 18 C -0.151 4.151 19 N -0.208 5.208 20 N -0.376 5.376 21 C -0.365 4.365 22 H 0.093 0.907 23 C -0.272 4.272 24 N -0.622 5.622 25 Si 0.798 3.202 26 H -0.203 1.203 27 H -0.225 1.225 28 H -0.208 1.208 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.254 0.746 37 H 0.270 0.730 38 H 0.138 0.862 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.203 0.797 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.461 -6.073 -31.962 32.989 hybrid contribution 0.749 0.044 1.530 1.704 sum 6.210 -6.030 -30.432 31.639 Atomic orbital electron populations 1.22257 0.97044 1.01035 1.00932 1.20444 0.93217 0.95244 0.85438 0.93628 1.21918 0.92324 1.02069 0.99143 1.21229 0.95584 0.96350 0.85932 1.45765 1.06872 1.55480 1.26740 1.17112 0.82876 0.78974 0.83144 1.90827 1.56549 1.48135 1.50032 1.21607 0.92420 1.08224 0.99288 1.25750 1.00119 0.93749 0.85161 1.84405 1.32756 1.54914 1.35394 1.26985 0.76472 0.98268 0.98255 1.20083 1.02356 0.92841 0.85414 1.21631 1.00953 0.92913 0.99753 1.21517 1.01863 0.98684 0.93179 1.21593 1.00804 0.95767 0.97806 1.21518 1.01254 0.95620 0.96814 1.21627 1.01948 0.98855 0.92632 1.70731 1.34184 1.12841 1.03013 1.42648 1.78395 1.10215 1.06299 1.19578 1.34423 0.94136 0.88400 0.90690 1.25527 1.03345 0.96914 1.01450 1.69812 1.52875 1.10206 1.29267 0.85271 0.77923 0.77268 0.79691 1.20257 1.22453 1.20777 0.94655 0.90621 0.93721 0.87852 0.91232 0.93950 0.92249 0.74634 0.73046 0.86206 0.91173 0.91929 0.91042 0.90765 0.90750 0.91811 0.91011 0.90563 0.91537 0.91163 0.79712 0.94305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 9.49 71.98 0.68 -4.46 16 2 C 0.17 6.32 2.89 44.99 0.13 6.45 16 3 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 4 C -0.12 -3.57 4.87 30.59 0.15 -3.42 16 5 C 0.13 4.71 5.56 86.38 0.48 5.19 16 6 N -0.70 -21.73 5.55 -466.37 -2.59 -24.32 16 7 C 0.59 20.12 7.81 86.66 0.68 20.80 16 8 O -0.58 -23.71 16.89 -4.05 -0.07 -23.78 16 9 C -0.10 -2.66 6.99 40.41 0.28 -2.37 16 10 C 0.03 0.58 11.95 67.32 0.80 1.38 16 11 O -0.19 -3.68 10.73 0.39 0.00 -3.68 16 12 C 0.21 4.08 6.81 88.39 0.60 4.68 16 13 C 0.01 0.15 2.66 -11.54 -0.03 0.12 16 14 C -0.11 -1.20 5.19 30.59 0.16 -1.04 16 15 C -0.11 -0.81 5.92 30.60 0.18 -0.63 16 16 C -0.12 -0.71 5.92 30.59 0.18 -0.53 16 17 C -0.11 -0.72 5.92 30.59 0.18 -0.54 16 18 C -0.11 -1.07 5.18 30.60 0.16 -0.91 16 19 N -0.48 -11.78 11.06 -293.03 -3.24 -15.02 16 20 N -0.73 -37.11 4.57 -322.96 -1.48 -38.59 16 21 C -0.23 -13.16 9.93 84.04 0.83 -12.33 16 22 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 23 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 24 N -0.97 -61.24 13.06 21.65 0.28 -60.96 16 25 Si 0.97 47.77 29.55 68.60 2.03 49.80 16 26 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 27 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 28 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.04 1.90 7.75 -2.39 -0.02 1.88 16 35 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.42 10.88 8.20 -92.71 -0.76 10.12 16 37 H 0.25 4.07 8.06 -2.91 -0.02 4.05 16 38 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.06 0.39 8.14 -2.39 -0.02 0.38 16 45 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 48 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.37 20.35 7.80 -92.71 -0.72 19.63 16 50 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -74.08 409.78 0.33 -73.74 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: -0.55 Total: 34.69 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 5.94 Total: 8.10 kcal Atomic # 7 Polarization: -131.86 SS G_CDS: -7.02 Total: -138.88 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.06 Total: -27.46 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -74.08 0.33 -73.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663019404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.357 kcal (2) G-P(sol) polarization free energy of solvation -74.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds