Wall clock time and date at job start Tue Mar 31 2020 18:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47291 * 2 1 4 4 C 1.50705 * 109.46876 * 119.99878 * 2 1 3 5 5 O 1.33495 * 126.82679 * 299.97348 * 4 2 1 6 6 N 1.20659 * 113.15772 * 180.02562 * 5 4 2 7 7 C 1.30016 * 112.29654 * 359.71563 * 6 5 4 8 8 C 1.37351 * 126.83111 * 119.99921 * 4 2 1 9 9 C 1.47406 * 128.56654 * 359.95969 * 8 4 2 10 10 O 1.21608 * 119.99435 * 322.79270 * 9 8 4 11 11 N 1.34777 * 120.00269 * 142.79569 * 9 8 4 12 12 C 1.46923 * 120.62993 * 354.54599 * 11 9 8 13 13 C 1.53191 * 108.77877 * 233.63193 * 12 11 9 14 14 C 1.53033 * 109.31146 * 305.36886 * 13 12 11 15 15 C 1.53002 * 109.46162 * 181.38367 * 14 13 12 16 16 H 1.08998 * 109.47195 * 300.00250 * 15 14 13 17 17 C 1.53001 * 109.47105 * 59.99921 * 15 14 13 18 18 N 1.46501 * 109.47522 * 179.97438 * 15 14 13 19 19 C 1.36928 * 120.00259 * 154.72351 * 18 15 14 20 20 H 1.08006 * 120.00107 * 0.27993 * 19 18 15 21 21 C 1.38812 * 120.00376 * 180.27853 * 19 18 15 22 22 N 1.31618 * 119.99743 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00317 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46786 * 89.99759 * 23 21 19 25 25 H 1.48497 * 109.47379 * 210.00015 * 23 21 19 26 26 H 1.48502 * 109.46917 * 330.00272 * 23 21 19 27 27 C 1.53037 * 109.54227 * 61.36248 * 14 13 12 28 28 C 1.46919 * 120.62796 * 174.57486 * 11 9 8 29 29 H 1.08998 * 109.46673 * 60.00340 * 1 2 3 30 30 H 1.08997 * 109.46724 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47119 * 300.00620 * 1 2 3 32 32 H 1.09002 * 109.47346 * 239.99351 * 2 1 3 33 33 H 1.08999 * 109.47428 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46984 * 299.99470 * 3 2 1 35 35 H 1.09002 * 109.47455 * 59.99418 * 3 2 1 36 36 H 1.07999 * 127.33301 * 180.30296 * 7 6 5 37 37 H 1.09000 * 109.58550 * 113.84060 * 12 11 9 38 38 H 1.09001 * 109.70665 * 353.49367 * 12 11 9 39 39 H 1.08998 * 109.49913 * 185.41481 * 13 12 11 40 40 H 1.09001 * 109.52135 * 65.33582 * 13 12 11 41 41 H 1.09000 * 109.46181 * 301.35720 * 14 13 12 42 42 H 1.09009 * 109.46971 * 300.00306 * 17 15 14 43 43 H 1.09008 * 109.47000 * 60.00032 * 17 15 14 44 44 H 1.09000 * 109.47146 * 180.02562 * 17 15 14 45 45 H 0.97004 * 119.99419 * 335.00442 * 18 15 14 46 46 H 0.96996 * 120.00114 * 180.02562 * 22 21 19 47 47 H 1.09005 * 109.49705 * 58.58502 * 27 14 13 48 48 H 1.09001 * 109.50159 * 178.68472 * 27 14 13 49 49 H 1.09006 * 109.58247 * 246.15495 * 28 11 9 50 50 H 1.08990 * 109.59029 * 6.57683 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7957 -0.3749 2.5008 6 7 2.3212 -1.1175 3.2935 7 6 2.9871 -2.0700 2.7106 8 6 2.8250 -1.8315 1.2681 9 6 3.3729 -2.6078 0.1412 10 8 2.7083 -2.7722 -0.8639 11 7 4.6103 -3.1354 0.2247 12 6 5.4706 -2.8469 1.3802 13 6 6.8132 -2.3105 0.8738 14 6 7.4121 -3.3053 -0.1230 15 6 8.7695 -2.7894 -0.6050 16 1 8.6390 -1.8223 -1.0906 17 6 9.7110 -2.6364 0.5913 18 7 9.3434 -3.7418 -1.5588 19 6 10.2442 -3.3130 -2.4966 20 1 10.5350 -2.2734 -2.5304 21 6 10.7836 -4.2143 -3.4041 22 7 10.4296 -5.4813 -3.3627 23 14 12.0119 -3.6292 -4.6840 24 1 13.3878 -3.7386 -4.1360 25 1 11.8960 -4.4703 -5.9023 26 1 11.7285 -2.2134 -5.0311 27 6 6.4712 -3.4599 -1.3200 28 6 5.1247 -4.0093 -0.8384 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.5427 -2.8656 3.1846 37 1 5.6342 -3.7609 1.9512 38 1 4.9947 -2.0997 2.0154 39 1 7.4947 -2.1832 1.7148 40 1 6.6594 -1.3502 0.3816 41 1 7.5429 -4.2722 0.3630 42 1 9.2842 -1.9279 1.3013 43 1 9.8415 -3.6035 1.0770 44 1 10.6779 -2.2684 0.2480 45 1 9.0821 -4.6755 -1.5284 46 1 10.8067 -6.1113 -3.9965 47 1 6.3201 -2.4889 -1.7918 48 1 6.9093 -4.1507 -2.0404 49 1 5.2601 -5.0182 -0.4484 50 1 4.4195 -4.0281 -1.6692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664462130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:52 Heat of formation + Delta-G solvation = 23.424523 kcal Electronic energy + Delta-G solvation = -29938.620315 eV Core-core repulsion = 25969.015439 eV Total energy + Delta-G solvation = -3969.604876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.20513 -40.21190 -38.00829 -36.32717 -35.46520 -34.10091 -32.84355 -31.47176 -30.86704 -30.66758 -28.28164 -27.56192 -26.12334 -24.45796 -23.94169 -23.73499 -22.68347 -21.47739 -20.73833 -19.68821 -19.10234 -18.05682 -17.79257 -17.07335 -16.70969 -16.17070 -15.59154 -15.15699 -14.89389 -14.63100 -14.11910 -14.01989 -13.87631 -13.84581 -13.66762 -13.60447 -13.39469 -12.82981 -12.59004 -12.57657 -12.27708 -12.10495 -11.99535 -11.81735 -11.67277 -11.65380 -11.23250 -11.19715 -11.04857 -10.89358 -10.76316 -10.63887 -10.37467 -10.20778 -10.15340 -10.07341 -9.79934 -9.69728 -9.58557 -8.91435 -8.66086 -6.95550 -5.77250 -3.05185 0.88976 1.52586 2.48514 2.67360 3.01406 3.42611 3.48263 3.49531 3.90457 3.96879 4.32173 4.44929 4.57059 4.65435 4.67265 4.76241 4.91435 4.97027 5.08009 5.21453 5.22253 5.24869 5.35538 5.41990 5.42716 5.48055 5.50497 5.54022 5.61704 5.64855 5.74989 5.83749 5.87859 5.89013 5.91833 6.03759 6.07308 6.13442 6.30539 6.33933 6.45768 6.55318 6.64549 6.79998 6.92558 7.10349 7.26331 7.69896 7.87163 7.98781 8.41699 9.52971 10.10885 10.45590 11.45446 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.002567 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.647055 B =10904.784161 C =11305.958591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.022 4.022 3 C -0.150 4.150 4 C 0.048 3.952 5 O 0.095 5.905 6 N -0.354 5.354 7 C 0.021 3.979 8 C -0.254 4.254 9 C 0.597 3.403 10 O -0.535 6.535 11 N -0.596 5.596 12 C 0.101 3.899 13 C -0.128 4.128 14 C -0.090 4.090 15 C 0.178 3.822 16 H 0.044 0.956 17 C -0.166 4.166 18 N -0.722 5.722 19 C -0.235 4.235 20 H 0.068 0.932 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.904 3.096 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.283 1.283 27 C -0.121 4.121 28 C 0.112 3.888 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.116 0.884 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.202 0.798 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.037 0.963 43 H 0.045 0.955 44 H 0.051 0.949 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.062 0.938 48 H 0.093 0.907 49 H 0.069 0.931 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.385 9.791 12.262 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.041 4.041 3 C -0.208 4.208 4 C -0.016 4.016 5 O 0.034 5.966 6 N -0.059 5.059 7 C -0.161 4.161 8 C -0.261 4.261 9 C 0.384 3.616 10 O -0.413 6.413 11 N -0.328 5.328 12 C -0.022 4.022 13 C -0.167 4.167 14 C -0.110 4.110 15 C 0.068 3.932 16 H 0.062 0.938 17 C -0.226 4.226 18 N -0.364 5.364 19 C -0.366 4.366 20 H 0.086 0.914 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.735 3.265 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.159 4.159 28 C -0.010 4.010 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.218 0.782 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.080 0.920 48 H 0.112 0.888 49 H 0.088 0.912 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.855 10.133 12.864 24.973 hybrid contribution 1.232 -0.621 -1.137 1.788 sum -17.623 9.511 11.727 23.207 Atomic orbital electron populations 1.21846 0.92550 1.02987 1.02987 1.20071 0.97253 0.96195 0.90583 1.21907 1.01808 0.93862 1.03195 1.24800 0.94628 0.94665 0.87479 1.84541 1.55635 1.43903 1.12510 1.73676 1.11655 1.04483 1.16109 1.26421 1.00342 0.99411 0.89922 1.22092 1.08112 1.01402 0.94509 1.16858 0.81267 0.78483 0.85009 1.90795 1.59372 1.60008 1.31105 1.47975 1.13594 1.48423 1.22846 1.22016 0.91547 1.00928 0.87714 1.22016 0.95053 0.99559 1.00054 1.21391 0.95823 0.98623 0.95115 1.20206 0.89367 0.93728 0.89870 0.93766 1.22502 1.01042 1.00078 0.98986 1.42402 1.50855 1.07466 1.35650 1.19211 1.16312 0.93856 1.07244 0.91372 1.24705 1.00828 0.95574 0.99841 1.69647 1.47358 1.01819 1.39379 0.86236 0.81346 0.77573 0.81323 1.21843 1.21824 1.20832 1.21890 0.93000 1.02592 0.98457 1.21812 0.96627 0.92370 0.90172 0.90926 0.91845 0.91856 0.86564 0.91988 0.90847 0.91706 0.78170 0.91034 0.89941 0.90215 0.91609 0.91315 0.94390 0.93581 0.93020 0.78323 0.93570 0.91959 0.88828 0.91234 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.18 37.16 0.34 -0.69 16 2 C -0.02 -0.19 3.29 -91.77 -0.30 -0.49 16 3 C -0.15 -1.04 9.18 37.16 0.34 -0.70 16 4 C 0.05 0.50 6.06 -34.63 -0.21 0.29 16 5 O 0.09 1.00 11.06 18.65 0.21 1.20 16 6 N -0.35 -3.89 12.01 31.80 0.38 -3.50 16 7 C 0.02 0.21 10.07 -14.73 -0.15 0.06 16 8 C -0.25 -2.87 5.52 -102.89 -0.57 -3.43 16 9 C 0.60 7.93 7.48 -12.53 -0.09 7.84 16 10 O -0.53 -8.58 15.28 5.27 0.08 -8.50 16 11 N -0.60 -7.31 2.97 -174.05 -0.52 -7.83 16 12 C 0.10 1.01 5.63 -3.71 -0.02 0.99 16 13 C -0.13 -1.49 5.04 -26.62 -0.13 -1.62 16 14 C -0.09 -1.32 1.79 -90.58 -0.16 -1.49 16 15 C 0.18 3.29 2.47 -67.93 -0.17 3.12 16 16 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 17 C -0.17 -2.81 9.14 37.16 0.34 -2.47 16 18 N -0.72 -17.08 4.40 -53.42 -0.24 -17.32 16 19 C -0.23 -6.32 9.93 -15.06 -0.15 -6.47 16 20 H 0.07 1.81 7.83 -52.48 -0.41 1.39 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 23 Si 0.90 22.15 29.55 -169.99 -5.02 17.12 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C -0.12 -1.86 5.22 -26.61 -0.14 -2.00 16 28 C 0.11 1.49 6.44 -3.71 -0.02 1.47 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.12 1.20 6.73 -51.93 -0.35 0.85 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.20 1.39 7.45 -52.49 -0.39 1.00 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.73 4.65 -51.93 -0.24 0.49 16 39 H 0.08 0.84 6.36 -51.93 -0.33 0.51 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.04 0.52 6.40 -51.92 -0.33 0.19 16 43 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.38 9.63 7.58 -40.82 -0.31 9.32 16 46 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.09 1.69 7.40 -51.93 -0.38 1.31 16 49 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.09 1.32 6.99 -51.93 -0.36 0.96 16 LS Contribution 395.24 15.07 5.96 5.96 Total: -1.00 -31.25 395.24 -7.78 -39.04 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -8.16 Total: 6.71 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -1.19 Total: -6.07 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.35 Total: -55.46 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.29 Total: -7.30 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.25 -7.78 -39.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664462130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.461 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds