Wall clock time and date at job start Tue Mar 31 2020 18:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47291 * 2 1 4 4 C 1.50705 * 109.46876 * 119.99878 * 2 1 3 5 5 O 1.33495 * 126.82679 * 299.97348 * 4 2 1 6 6 N 1.20659 * 113.15772 * 180.02562 * 5 4 2 7 7 C 1.30016 * 112.29654 * 359.71563 * 6 5 4 8 8 C 1.37351 * 126.83111 * 119.99921 * 4 2 1 9 9 C 1.47406 * 128.56654 * 359.95969 * 8 4 2 10 10 O 1.21608 * 119.99435 * 322.79270 * 9 8 4 11 11 N 1.34777 * 120.00269 * 142.79569 * 9 8 4 12 12 C 1.46923 * 120.62993 * 354.54599 * 11 9 8 13 13 C 1.53191 * 108.77877 * 233.63193 * 12 11 9 14 14 C 1.53033 * 109.31146 * 305.36886 * 13 12 11 15 15 C 1.53002 * 109.46162 * 181.38367 * 14 13 12 16 16 H 1.08998 * 109.47195 * 300.00250 * 15 14 13 17 17 C 1.53001 * 109.47105 * 59.99921 * 15 14 13 18 18 N 1.46501 * 109.47522 * 179.97438 * 15 14 13 19 19 C 1.36928 * 120.00259 * 154.72351 * 18 15 14 20 20 H 1.08006 * 120.00107 * 0.27993 * 19 18 15 21 21 C 1.38812 * 120.00376 * 180.27853 * 19 18 15 22 22 N 1.31618 * 119.99743 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00317 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46786 * 89.99759 * 23 21 19 25 25 H 1.48497 * 109.47379 * 210.00015 * 23 21 19 26 26 H 1.48502 * 109.46917 * 330.00272 * 23 21 19 27 27 C 1.53037 * 109.54227 * 61.36248 * 14 13 12 28 28 C 1.46919 * 120.62796 * 174.57486 * 11 9 8 29 29 H 1.08998 * 109.46673 * 60.00340 * 1 2 3 30 30 H 1.08997 * 109.46724 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47119 * 300.00620 * 1 2 3 32 32 H 1.09002 * 109.47346 * 239.99351 * 2 1 3 33 33 H 1.08999 * 109.47428 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46984 * 299.99470 * 3 2 1 35 35 H 1.09002 * 109.47455 * 59.99418 * 3 2 1 36 36 H 1.07999 * 127.33301 * 180.30296 * 7 6 5 37 37 H 1.09000 * 109.58550 * 113.84060 * 12 11 9 38 38 H 1.09001 * 109.70665 * 353.49367 * 12 11 9 39 39 H 1.08998 * 109.49913 * 185.41481 * 13 12 11 40 40 H 1.09001 * 109.52135 * 65.33582 * 13 12 11 41 41 H 1.09000 * 109.46181 * 301.35720 * 14 13 12 42 42 H 1.09009 * 109.46971 * 300.00306 * 17 15 14 43 43 H 1.09008 * 109.47000 * 60.00032 * 17 15 14 44 44 H 1.09000 * 109.47146 * 180.02562 * 17 15 14 45 45 H 0.97004 * 119.99419 * 335.00442 * 18 15 14 46 46 H 0.96996 * 120.00114 * 180.02562 * 22 21 19 47 47 H 1.09005 * 109.49705 * 58.58502 * 27 14 13 48 48 H 1.09001 * 109.50159 * 178.68472 * 27 14 13 49 49 H 1.09006 * 109.58247 * 246.15495 * 28 11 9 50 50 H 1.08990 * 109.59029 * 6.57683 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7957 -0.3749 2.5008 6 7 2.3212 -1.1175 3.2935 7 6 2.9871 -2.0700 2.7106 8 6 2.8250 -1.8315 1.2681 9 6 3.3729 -2.6078 0.1412 10 8 2.7083 -2.7722 -0.8639 11 7 4.6103 -3.1354 0.2247 12 6 5.4706 -2.8469 1.3802 13 6 6.8132 -2.3105 0.8738 14 6 7.4121 -3.3053 -0.1230 15 6 8.7695 -2.7894 -0.6050 16 1 8.6390 -1.8223 -1.0906 17 6 9.7110 -2.6364 0.5913 18 7 9.3434 -3.7418 -1.5588 19 6 10.2442 -3.3130 -2.4966 20 1 10.5350 -2.2734 -2.5304 21 6 10.7836 -4.2143 -3.4041 22 7 10.4296 -5.4813 -3.3627 23 14 12.0119 -3.6292 -4.6840 24 1 13.3878 -3.7386 -4.1360 25 1 11.8960 -4.4703 -5.9023 26 1 11.7285 -2.2134 -5.0311 27 6 6.4712 -3.4599 -1.3200 28 6 5.1247 -4.0093 -0.8384 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.5427 -2.8656 3.1846 37 1 5.6342 -3.7609 1.9512 38 1 4.9947 -2.0997 2.0154 39 1 7.4947 -2.1832 1.7148 40 1 6.6594 -1.3502 0.3816 41 1 7.5429 -4.2722 0.3630 42 1 9.2842 -1.9279 1.3013 43 1 9.8415 -3.6035 1.0770 44 1 10.6779 -2.2684 0.2480 45 1 9.0821 -4.6755 -1.5284 46 1 10.8067 -6.1113 -3.9965 47 1 6.3201 -2.4889 -1.7918 48 1 6.9093 -4.1507 -2.0404 49 1 5.2601 -5.0182 -0.4484 50 1 4.4195 -4.0281 -1.6692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664462130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:51 Heat of formation + Delta-G solvation = 5.604935 kcal Electronic energy + Delta-G solvation = -29939.393031 eV Core-core repulsion = 25969.015439 eV Total energy + Delta-G solvation = -3970.377591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.99493 -41.26550 -39.22526 -37.12945 -36.77455 -35.04949 -34.46533 -32.54112 -32.23810 -31.66758 -29.90917 -28.11496 -27.23320 -25.92385 -25.04848 -24.75791 -23.77905 -22.50948 -21.75411 -21.05229 -20.08452 -19.24351 -18.79062 -18.54812 -17.53268 -17.19366 -16.78211 -16.46019 -15.98152 -15.64165 -15.50553 -15.44009 -15.01030 -14.84139 -14.69090 -14.52443 -14.25334 -14.19000 -14.00476 -13.55919 -13.41996 -13.09148 -13.00894 -12.86493 -12.79237 -12.76704 -12.43122 -12.30119 -12.27541 -12.21691 -12.12511 -11.89633 -11.86176 -11.49868 -11.48610 -11.33212 -11.26798 -10.98721 -10.87155 -10.52501 -9.70863 -8.94208 -7.91117 -5.17010 0.05384 0.74296 1.47185 1.47533 1.55690 1.61262 1.73644 2.08470 2.57734 3.14110 3.22531 3.42755 3.48113 3.73073 3.74647 3.83307 3.88733 3.99440 4.04489 4.14212 4.19355 4.24642 4.36383 4.44348 4.53018 4.56647 4.60833 4.74939 4.75022 4.75912 4.81832 4.86642 4.88524 4.89473 4.93182 5.00517 5.07663 5.11125 5.15908 5.24077 5.28280 5.29446 5.32569 5.49694 5.52124 5.62296 5.69612 6.28007 6.32218 6.96385 7.09564 7.38483 8.17419 8.39564 9.32234 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.002567 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.647055 B =10904.784161 C =11305.958591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.024 4.024 3 C -0.146 4.146 4 C 0.056 3.944 5 O 0.091 5.909 6 N -0.370 5.370 7 C 0.037 3.963 8 C -0.275 4.275 9 C 0.596 3.404 10 O -0.571 6.571 11 N -0.594 5.594 12 C 0.101 3.899 13 C -0.121 4.121 14 C -0.080 4.080 15 C 0.172 3.828 16 H 0.031 0.969 17 C -0.156 4.156 18 N -0.732 5.732 19 C -0.230 4.230 20 H 0.069 0.931 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.963 3.037 24 H -0.289 1.289 25 H -0.298 1.298 26 H -0.273 1.273 27 C -0.112 4.112 28 C 0.121 3.879 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.231 0.769 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.045 0.955 44 H 0.028 0.972 45 H 0.373 0.627 46 H 0.249 0.751 47 H 0.046 0.954 48 H 0.059 0.941 49 H 0.084 0.916 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.975 11.155 14.493 26.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.043 4.043 3 C -0.203 4.203 4 C -0.008 4.008 5 O 0.033 5.967 6 N -0.077 5.077 7 C -0.145 4.145 8 C -0.283 4.283 9 C 0.385 3.615 10 O -0.452 6.452 11 N -0.325 5.325 12 C -0.020 4.020 13 C -0.159 4.159 14 C -0.099 4.099 15 C 0.064 3.936 16 H 0.049 0.951 17 C -0.216 4.216 18 N -0.373 5.373 19 C -0.362 4.362 20 H 0.087 0.913 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.793 3.207 24 H -0.217 1.217 25 H -0.225 1.225 26 H -0.198 1.198 27 C -0.151 4.151 28 C -0.002 4.002 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.247 0.753 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.064 0.936 44 H 0.047 0.953 45 H 0.205 0.795 46 H 0.058 0.942 47 H 0.064 0.936 48 H 0.078 0.922 49 H 0.102 0.898 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.450 11.560 15.141 27.225 hybrid contribution 1.373 -0.984 -1.809 2.475 sum -18.077 10.576 13.332 24.827 Atomic orbital electron populations 1.21841 0.91266 1.02586 1.04319 1.20135 0.98290 0.96830 0.89096 1.21897 1.01231 0.92781 1.04430 1.25117 0.93512 0.94291 0.87870 1.84542 1.55772 1.43996 1.12349 1.73674 1.12458 1.05116 1.16415 1.26832 0.99481 0.99344 0.88886 1.21967 1.09483 1.02075 0.94753 1.17103 0.81233 0.78142 0.85027 1.90776 1.60384 1.61337 1.32680 1.48004 1.13652 1.47842 1.23036 1.22212 0.90106 1.02688 0.87020 1.21967 0.96249 0.98078 0.99621 1.21269 0.93506 0.99709 0.95399 1.20458 0.91546 0.92126 0.89501 0.95052 1.22349 0.99475 1.01043 0.98707 1.42580 1.50577 1.07836 1.36273 1.19536 1.15751 0.93751 1.07210 0.91288 1.25416 1.03234 0.95855 1.02219 1.69789 1.48991 1.02769 1.40356 0.85281 0.79225 0.77350 0.78798 1.21675 1.22460 1.19783 1.21719 0.94306 1.00840 0.98218 1.21597 0.94894 0.93199 0.90465 0.89364 0.93092 0.90776 0.88592 0.92847 0.89407 0.90698 0.75262 0.88464 0.88094 0.87978 0.92285 0.90842 0.90452 0.93598 0.95310 0.79484 0.94241 0.93553 0.92203 0.89770 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.18 71.98 0.66 -1.19 16 2 C -0.02 -0.39 3.29 -11.54 -0.04 -0.43 16 3 C -0.15 -1.81 9.18 71.98 0.66 -1.15 16 4 C 0.06 1.09 6.06 25.48 0.15 1.25 16 5 O 0.09 1.75 11.06 76.97 0.85 2.60 16 6 N -0.37 -7.21 12.01 -54.20 -0.65 -7.87 16 7 C 0.04 0.61 10.07 87.29 0.88 1.49 16 8 C -0.28 -5.78 5.52 -18.74 -0.10 -5.88 16 9 C 0.60 15.38 7.48 86.66 0.65 16.03 16 10 O -0.57 -18.62 15.28 -4.06 -0.06 -18.68 16 11 N -0.59 -13.65 2.97 -822.83 -2.45 -16.10 16 12 C 0.10 1.68 5.63 86.36 0.49 2.17 16 13 C -0.12 -2.44 5.04 30.67 0.15 -2.28 16 14 C -0.08 -2.24 1.79 -10.77 -0.02 -2.26 16 15 C 0.17 6.24 2.47 44.99 0.11 6.35 16 16 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 17 C -0.16 -4.99 9.14 71.98 0.66 -4.33 16 18 N -0.73 -35.15 4.40 -322.94 -1.42 -36.57 16 19 C -0.23 -12.53 9.93 84.03 0.83 -11.70 16 20 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 21 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 22 N -0.97 -58.47 13.06 21.65 0.28 -58.18 16 23 Si 0.96 46.16 29.55 68.60 2.03 48.19 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 25 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 26 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 27 C -0.11 -3.51 5.22 30.67 0.16 -3.35 16 28 C 0.12 3.20 6.44 86.37 0.56 3.76 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 2.01 6.73 -2.39 -0.02 1.99 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 36 H 0.23 2.19 7.45 -2.91 -0.02 2.17 16 37 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.10 1.38 4.65 -2.39 -0.01 1.37 16 39 H 0.10 1.67 6.36 -2.39 -0.02 1.65 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 42 H 0.08 1.85 6.40 -2.38 -0.02 1.84 16 43 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.37 19.24 7.58 -92.71 -0.70 18.54 16 46 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 47 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 48 H 0.06 2.28 7.40 -2.39 -0.02 2.26 16 49 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 50 H 0.08 2.29 6.99 -2.39 -0.02 2.27 16 Total: -1.00 -69.44 395.24 5.09 -64.35 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.24 Total: 27.59 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 6.27 Total: -5.33 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -4.24 Total: -118.72 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.79 Total: -16.08 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -69.44 5.09 -64.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664462130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.951 kcal (2) G-P(sol) polarization free energy of solvation -69.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds