Wall clock time and date at job start Tue Mar 31 2020 19:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46930 * 2 1 4 4 C 1.52998 * 109.47260 * 119.99121 * 2 1 3 5 5 C 1.50702 * 109.47582 * 295.00705 * 4 2 1 6 6 O 1.21282 * 119.99676 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00044 * 179.72055 * 5 4 2 8 8 C 1.47862 * 126.93124 * 0.29911 * 7 5 4 9 9 C 1.56020 * 105.11489 * 181.91220 * 8 7 5 10 10 H 1.08999 * 116.25575 * 158.85279 * 9 8 7 11 11 C 1.57082 * 99.59929 * 32.80623 * 9 8 7 12 12 C 1.49286 * 126.92527 * 179.97438 * 7 5 4 13 13 H 1.08998 * 116.12296 * 16.01750 * 12 7 5 14 14 C 1.58432 * 103.73121 * 246.73661 * 12 7 5 15 15 N 1.48288 * 104.80203 * 288.57311 * 14 12 7 16 16 C 1.46891 * 111.00201 * 122.84693 * 15 14 12 17 17 C 1.50696 * 109.47360 * 183.92421 * 16 15 14 18 18 O 1.21297 * 119.99775 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00407 * 179.97438 * 17 16 15 20 20 C 1.37099 * 120.00112 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99922 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99730 * 180.02562 * 20 19 17 23 23 N 1.31417 * 119.99557 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00300 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.46956 * 89.99830 * 24 22 20 26 26 H 1.48501 * 109.47033 * 210.00155 * 24 22 20 27 27 H 1.48503 * 109.47102 * 330.00308 * 24 22 20 28 28 C 1.52997 * 109.47636 * 239.99612 * 2 1 3 29 29 C 1.53003 * 117.49894 * 128.61881 * 28 2 1 30 30 C 1.52995 * 59.99970 * 252.51272 * 29 28 2 31 31 H 1.08997 * 109.46810 * 60.00938 * 1 2 3 32 32 H 1.09000 * 109.46574 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47488 * 300.00389 * 1 2 3 34 34 H 1.09001 * 109.47286 * 175.00272 * 4 2 1 35 35 H 1.09004 * 109.46953 * 55.00698 * 4 2 1 36 36 H 1.09000 * 110.31567 * 300.82252 * 8 7 5 37 37 H 1.09006 * 110.31228 * 62.90652 * 8 7 5 38 38 H 1.09007 * 112.35608 * 64.33400 * 11 9 8 39 39 H 1.08993 * 112.36106 * 191.74175 * 11 9 8 40 40 H 1.09001 * 110.19329 * 169.88951 * 14 12 7 41 41 H 1.09001 * 110.79742 * 47.55860 * 14 12 7 42 42 H 1.08998 * 109.47378 * 303.92177 * 16 15 14 43 43 H 1.08997 * 109.47338 * 63.92240 * 16 15 14 44 44 H 0.97002 * 119.99999 * 0.02562 * 19 17 16 45 45 H 0.97000 * 119.99491 * 180.02562 * 23 22 20 46 46 H 1.09001 * 115.55059 * 274.33040 * 28 2 1 47 47 H 1.08997 * 117.49781 * 0.02562 * 29 28 2 48 48 H 1.08995 * 117.49861 * 145.02346 * 29 28 2 49 49 H 1.08997 * 117.50177 * 252.50896 * 30 29 28 50 50 H 1.09003 * 117.50077 * 107.48987 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7210 1.2493 5 6 1.6413 0.0573 2.4766 6 8 1.0115 1.0876 2.3632 7 7 1.9800 -0.3942 3.7004 8 6 2.7412 -1.6222 4.0151 9 6 2.7985 -1.6773 5.5733 10 1 2.9931 -2.6548 6.0144 11 6 1.4124 -1.0192 5.9098 12 6 1.6680 0.2481 5.0114 13 1 0.8929 1.0144 4.9981 14 6 3.0874 0.6846 5.5635 15 7 3.7538 -0.5851 5.9415 16 6 5.0305 -0.7411 5.2320 17 6 5.6305 -2.0823 5.5666 18 8 5.0516 -2.8342 6.3223 19 7 6.8103 -2.4466 5.0263 20 6 7.3563 -3.6666 5.3312 21 1 6.8409 -4.3360 6.0040 22 6 8.5729 -4.0418 4.7745 23 7 9.0961 -5.2115 5.0663 24 14 9.4648 -2.8838 3.6114 25 1 10.3744 -2.0047 4.3892 26 1 10.2560 -3.6751 2.6352 27 1 8.4728 -2.0508 2.8852 28 6 2.0401 -0.7213 -1.2491 29 6 3.0742 0.0051 -2.1116 30 6 1.6359 -0.1497 -2.6095 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 3.1263 -0.7992 1.2057 35 1 1.6055 -1.7197 1.2953 36 1 2.2242 -2.4985 3.6242 37 1 3.7472 -1.5606 3.5999 38 1 0.5726 -1.6183 5.5576 39 1 1.3192 -0.7658 6.9657 40 1 2.9704 1.3255 6.4375 41 1 3.6614 1.1984 4.7923 42 1 4.8592 -0.6777 4.1575 43 1 5.7152 0.0498 5.5381 44 1 7.2734 -1.8452 4.4223 45 1 9.9456 -5.4733 4.6780 46 1 2.1269 -1.8045 -1.1640 47 1 3.3915 0.9967 -1.7888 48 1 3.8417 -0.6001 -2.5940 49 1 1.4570 -0.8567 -3.4195 50 1 1.0065 0.7403 -2.6146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665432682.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:00 Heat of formation + Delta-G solvation = 0.853969 kcal Electronic energy + Delta-G solvation = -30111.063394 eV Core-core repulsion = 26140.479785 eV Total energy + Delta-G solvation = -3970.583609 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26509 -39.38180 -38.21185 -37.66502 -34.29679 -33.71565 -33.33940 -31.79685 -31.13046 -29.70048 -27.96798 -26.76384 -25.05848 -24.18883 -23.65894 -22.49937 -21.39479 -20.59182 -19.95052 -19.48021 -18.77153 -18.20879 -17.34930 -16.66597 -16.21401 -15.85905 -15.63718 -15.37343 -15.01039 -14.81087 -14.36911 -14.02463 -13.86431 -13.46793 -13.30489 -13.17650 -13.07300 -12.76073 -12.63698 -12.37793 -12.21361 -12.01161 -11.86521 -11.82262 -11.58095 -11.56449 -11.49268 -11.30439 -11.26753 -11.16570 -10.98413 -10.95011 -10.65215 -10.53613 -10.14129 -10.03854 -9.79213 -9.62028 -8.77123 -8.55757 -8.25701 -8.06882 -6.37672 -3.89322 2.53579 2.75702 2.96723 3.02217 3.10780 3.55733 3.63198 3.82838 4.04317 4.19687 4.36942 4.41303 4.50107 4.53289 4.67292 4.71250 4.80394 4.89332 4.92963 5.03495 5.10737 5.18437 5.22693 5.33609 5.34943 5.38477 5.40204 5.48596 5.57363 5.62020 5.66246 5.66628 5.70915 5.73459 5.74174 5.80448 5.85238 5.88378 5.94818 5.95576 6.13150 6.17649 6.24976 6.31951 6.86059 7.02386 7.44212 7.50821 8.06438 8.07138 8.52185 8.87896 9.35042 9.74075 10.75159 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009378 B = 0.003650 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2984.858841 B = 7670.179439 C = 9965.467744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.042 4.042 3 H 0.077 0.923 4 C -0.132 4.132 5 C 0.532 3.468 6 O -0.544 6.544 7 N -0.621 5.621 8 C 0.055 3.945 9 C 0.071 3.929 10 H 0.157 0.843 11 C -0.136 4.136 12 C 0.108 3.892 13 H 0.125 0.875 14 C 0.026 3.974 15 N -0.492 5.492 16 C 0.027 3.973 17 C 0.452 3.548 18 O -0.562 6.562 19 N -0.588 5.588 20 C -0.305 4.305 21 H 0.121 0.879 22 C 0.043 3.957 23 N -0.879 5.879 24 Si 0.878 3.122 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.270 1.270 28 C -0.150 4.150 29 C -0.181 4.181 30 C -0.178 4.178 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.370 0.630 45 H 0.274 0.726 46 H 0.105 0.895 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.092 0.908 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.490 11.383 -10.033 20.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.061 4.061 3 H 0.095 0.905 4 C -0.172 4.172 5 C 0.322 3.678 6 O -0.422 6.422 7 N -0.357 5.357 8 C -0.069 4.069 9 C -0.037 4.037 10 H 0.174 0.826 11 C -0.175 4.175 12 C 0.005 3.995 13 H 0.143 0.857 14 C -0.103 4.103 15 N -0.216 5.216 16 C -0.105 4.105 17 C 0.238 3.762 18 O -0.444 6.444 19 N -0.227 5.227 20 C -0.434 4.434 21 H 0.138 0.862 22 C -0.160 4.160 23 N -0.518 5.518 24 Si 0.704 3.296 25 H -0.195 1.195 26 H -0.201 1.201 27 H -0.196 1.196 28 C -0.168 4.168 29 C -0.218 4.218 30 C -0.215 4.215 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.109 0.891 44 H 0.203 0.797 45 H 0.085 0.915 46 H 0.123 0.877 47 H 0.112 0.888 48 H 0.111 0.889 49 H 0.111 0.889 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.901 11.276 -9.159 20.811 hybrid contribution 1.061 0.710 -1.991 2.365 sum -13.840 11.986 -11.150 21.437 Atomic orbital electron populations 1.21914 0.94419 1.01492 1.02796 1.20444 0.96355 0.98816 0.90511 0.90484 1.21712 1.03073 1.00185 0.92204 1.20364 0.78702 0.85373 0.83337 1.90649 1.40685 1.24901 1.85976 1.49417 1.55434 1.25396 1.05406 1.23444 0.96713 0.87099 0.99633 1.24926 0.90433 0.98340 0.89970 0.82617 1.24022 0.97162 0.95781 1.00501 1.24590 0.97162 0.96317 0.81457 0.85696 1.24173 0.93428 0.92936 0.99768 1.64707 1.01962 1.01325 1.53616 1.22262 0.92733 0.98548 0.96955 1.19530 0.83133 0.88205 0.85376 1.90503 1.61583 1.54086 1.38255 1.42215 1.19667 1.17902 1.42906 1.19422 1.03851 0.92574 1.27552 0.86150 1.25037 0.96692 0.96355 0.97935 1.69620 1.19115 1.19480 1.43634 0.86703 0.80536 0.81026 0.81305 1.19539 1.20127 1.19589 1.22359 1.03712 0.99244 0.91502 1.23033 0.92513 1.02090 1.04174 1.22913 0.98125 1.03289 0.97129 0.92911 0.93297 0.90740 0.88920 0.88886 0.90771 0.90098 0.89920 0.88615 0.89296 0.92249 0.92785 0.89056 0.79738 0.91545 0.87738 0.88828 0.88852 0.88938 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.77 37.16 0.33 -1.19 16 2 C -0.04 -0.43 2.19 -90.62 -0.20 -0.63 16 3 H 0.08 0.88 7.71 -51.92 -0.40 0.48 16 4 C -0.13 -1.38 4.44 -27.88 -0.12 -1.50 16 5 C 0.53 6.82 7.61 -10.99 -0.08 6.74 16 6 O -0.54 -8.32 14.31 5.56 0.08 -8.24 16 7 N -0.62 -7.63 2.95 -155.07 -0.46 -8.09 16 8 C 0.05 0.70 5.62 -1.68 -0.01 0.69 16 9 C 0.07 1.00 4.13 -62.32 -0.26 0.74 16 10 H 0.16 2.61 6.35 -51.93 -0.33 2.28 16 11 C -0.14 -1.52 6.85 -22.10 -0.15 -1.67 16 12 C 0.11 1.24 5.34 -60.97 -0.33 0.92 16 13 H 0.13 1.37 8.05 -51.93 -0.42 0.95 16 14 C 0.03 0.32 6.40 -0.06 0.00 0.32 16 15 N -0.49 -7.32 5.17 -216.52 -1.12 -8.44 16 16 C 0.03 0.42 4.66 -4.98 -0.02 0.40 16 17 C 0.45 9.51 7.44 -10.99 -0.08 9.43 16 18 O -0.56 -13.68 13.57 5.54 0.08 -13.61 16 19 N -0.59 -13.25 5.09 -10.96 -0.06 -13.30 16 20 C -0.31 -8.24 10.16 -14.93 -0.15 -8.40 16 21 H 0.12 3.72 7.39 -52.49 -0.39 3.33 16 22 C 0.04 1.14 5.50 -17.46 -0.10 1.05 16 23 N -0.88 -24.93 13.96 55.50 0.77 -24.15 16 24 Si 0.88 18.78 27.74 -169.99 -4.71 14.06 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.27 -5.24 6.52 56.52 0.37 -4.88 16 28 C -0.15 -1.33 5.15 -90.62 -0.47 -1.80 16 29 C -0.18 -1.54 10.18 -26.73 -0.27 -1.81 16 30 C -0.18 -1.43 9.73 -26.73 -0.26 -1.69 16 31 H 0.05 0.49 7.29 -51.93 -0.38 0.11 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.91 5.95 -51.93 -0.31 0.60 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.08 1.12 5.19 -51.93 -0.27 0.85 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 0.74 7.62 -51.93 -0.40 0.34 16 42 H 0.05 0.79 5.64 -51.93 -0.29 0.49 16 43 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.37 7.40 5.76 -40.82 -0.24 7.17 16 45 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.10 0.90 8.11 -51.93 -0.42 0.47 16 47 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 48 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.09 0.74 7.61 -51.93 -0.40 0.35 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -31.12 388.12 -9.79 -40.91 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -8.05 Total: 13.41 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -2.18 Total: 1.60 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.86 Total: -53.98 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: 0.15 Total: -21.84 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.71 Total: 14.06 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.12 -9.79 -40.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665432682.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.761 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds