Wall clock time and date at job start Tue Mar 31 2020 19:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46930 * 2 1 4 4 C 1.52998 * 109.47260 * 119.99121 * 2 1 3 5 5 C 1.50702 * 109.47582 * 295.00705 * 4 2 1 6 6 O 1.21282 * 119.99676 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00044 * 179.72055 * 5 4 2 8 8 C 1.47862 * 126.93124 * 0.29911 * 7 5 4 9 9 C 1.56020 * 105.11489 * 181.91220 * 8 7 5 10 10 H 1.08999 * 116.25575 * 158.85279 * 9 8 7 11 11 C 1.57082 * 99.59929 * 32.80623 * 9 8 7 12 12 C 1.49286 * 126.92527 * 179.97438 * 7 5 4 13 13 H 1.08998 * 116.12296 * 16.01750 * 12 7 5 14 14 C 1.58432 * 103.73121 * 246.73661 * 12 7 5 15 15 N 1.48288 * 104.80203 * 288.57311 * 14 12 7 16 16 C 1.46891 * 111.00201 * 122.84693 * 15 14 12 17 17 C 1.50696 * 109.47360 * 183.92421 * 16 15 14 18 18 O 1.21297 * 119.99775 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00407 * 179.97438 * 17 16 15 20 20 C 1.37099 * 120.00112 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99922 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99730 * 180.02562 * 20 19 17 23 23 N 1.31417 * 119.99557 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00300 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.46956 * 89.99830 * 24 22 20 26 26 H 1.48501 * 109.47033 * 210.00155 * 24 22 20 27 27 H 1.48503 * 109.47102 * 330.00308 * 24 22 20 28 28 C 1.52997 * 109.47636 * 239.99612 * 2 1 3 29 29 C 1.53003 * 117.49894 * 128.61881 * 28 2 1 30 30 C 1.52995 * 59.99970 * 252.51272 * 29 28 2 31 31 H 1.08997 * 109.46810 * 60.00938 * 1 2 3 32 32 H 1.09000 * 109.46574 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47488 * 300.00389 * 1 2 3 34 34 H 1.09001 * 109.47286 * 175.00272 * 4 2 1 35 35 H 1.09004 * 109.46953 * 55.00698 * 4 2 1 36 36 H 1.09000 * 110.31567 * 300.82252 * 8 7 5 37 37 H 1.09006 * 110.31228 * 62.90652 * 8 7 5 38 38 H 1.09007 * 112.35608 * 64.33400 * 11 9 8 39 39 H 1.08993 * 112.36106 * 191.74175 * 11 9 8 40 40 H 1.09001 * 110.19329 * 169.88951 * 14 12 7 41 41 H 1.09001 * 110.79742 * 47.55860 * 14 12 7 42 42 H 1.08998 * 109.47378 * 303.92177 * 16 15 14 43 43 H 1.08997 * 109.47338 * 63.92240 * 16 15 14 44 44 H 0.97002 * 119.99999 * 0.02562 * 19 17 16 45 45 H 0.97000 * 119.99491 * 180.02562 * 23 22 20 46 46 H 1.09001 * 115.55059 * 274.33040 * 28 2 1 47 47 H 1.08997 * 117.49781 * 0.02562 * 29 28 2 48 48 H 1.08995 * 117.49861 * 145.02346 * 29 28 2 49 49 H 1.08997 * 117.50177 * 252.50896 * 30 29 28 50 50 H 1.09003 * 117.50077 * 107.48987 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7210 1.2493 5 6 1.6413 0.0573 2.4766 6 8 1.0115 1.0876 2.3632 7 7 1.9800 -0.3942 3.7004 8 6 2.7412 -1.6222 4.0151 9 6 2.7985 -1.6773 5.5733 10 1 2.9931 -2.6548 6.0144 11 6 1.4124 -1.0192 5.9098 12 6 1.6680 0.2481 5.0114 13 1 0.8929 1.0144 4.9981 14 6 3.0874 0.6846 5.5635 15 7 3.7538 -0.5851 5.9415 16 6 5.0305 -0.7411 5.2320 17 6 5.6305 -2.0823 5.5666 18 8 5.0516 -2.8342 6.3223 19 7 6.8103 -2.4466 5.0263 20 6 7.3563 -3.6666 5.3312 21 1 6.8409 -4.3360 6.0040 22 6 8.5729 -4.0418 4.7745 23 7 9.0961 -5.2115 5.0663 24 14 9.4648 -2.8838 3.6114 25 1 10.3744 -2.0047 4.3892 26 1 10.2560 -3.6751 2.6352 27 1 8.4728 -2.0508 2.8852 28 6 2.0401 -0.7213 -1.2491 29 6 3.0742 0.0051 -2.1116 30 6 1.6359 -0.1497 -2.6095 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 3.1263 -0.7992 1.2057 35 1 1.6055 -1.7197 1.2953 36 1 2.2242 -2.4985 3.6242 37 1 3.7472 -1.5606 3.5999 38 1 0.5726 -1.6183 5.5576 39 1 1.3192 -0.7658 6.9657 40 1 2.9704 1.3255 6.4375 41 1 3.6614 1.1984 4.7923 42 1 4.8592 -0.6777 4.1575 43 1 5.7152 0.0498 5.5381 44 1 7.2734 -1.8452 4.4223 45 1 9.9456 -5.4733 4.6780 46 1 2.1269 -1.8045 -1.1640 47 1 3.3915 0.9967 -1.7888 48 1 3.8417 -0.6001 -2.5940 49 1 1.4570 -0.8567 -3.4195 50 1 1.0065 0.7403 -2.6146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665432682.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:59 Heat of formation + Delta-G solvation = -19.949173 kcal Electronic energy + Delta-G solvation = -30111.965486 eV Core-core repulsion = 26140.479785 eV Total energy + Delta-G solvation = -3971.485701 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.32942 -40.48096 -39.69716 -38.53911 -36.05186 -34.99776 -34.15067 -33.73914 -32.25525 -30.72109 -28.90745 -28.16293 -26.17530 -25.64511 -24.59735 -23.12544 -22.30408 -21.77492 -21.22597 -20.70019 -20.25581 -19.53551 -18.33576 -17.76118 -17.67756 -17.01139 -16.66548 -16.44701 -16.33936 -16.09541 -15.37567 -15.32461 -15.02412 -14.85301 -14.48982 -14.40497 -14.16471 -13.97923 -13.86812 -13.73264 -13.29530 -13.04452 -13.03835 -12.92008 -12.63420 -12.52037 -12.41951 -12.39638 -12.37196 -12.23492 -12.06824 -12.02317 -11.97167 -11.74318 -11.47216 -11.23087 -10.82482 -10.75423 -10.29749 -10.21713 -9.78884 -9.20424 -8.39513 -5.99444 1.30068 1.35393 1.43676 1.55534 1.79570 1.95296 2.23155 2.59293 2.90412 3.07495 3.16976 3.28393 3.42775 3.57756 3.69359 3.71015 3.93215 3.95190 3.98056 4.03551 4.16280 4.21661 4.28901 4.32192 4.39554 4.44476 4.51763 4.58371 4.62130 4.69281 4.71966 4.78245 4.79933 4.86278 4.89492 4.98060 4.98541 5.04462 5.14440 5.16516 5.24277 5.27298 5.40387 5.46189 5.54208 5.75055 5.87752 6.01843 6.45762 6.60469 6.90224 7.08511 7.41063 7.96495 8.77725 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009378 B = 0.003650 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2984.858841 B = 7670.179439 C = 9965.467744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.037 4.037 3 H 0.061 0.939 4 C -0.129 4.129 5 C 0.530 3.470 6 O -0.570 6.570 7 N -0.619 5.619 8 C 0.064 3.936 9 C 0.059 3.941 10 H 0.123 0.877 11 C -0.121 4.121 12 C 0.111 3.889 13 H 0.135 0.865 14 C 0.031 3.969 15 N -0.510 5.510 16 C 0.038 3.962 17 C 0.457 3.543 18 O -0.598 6.598 19 N -0.591 5.591 20 C -0.322 4.322 21 H 0.061 0.939 22 C -0.012 4.012 23 N -0.933 5.933 24 Si 0.957 3.043 25 H -0.260 1.260 26 H -0.276 1.276 27 H -0.232 1.232 28 C -0.154 4.154 29 C -0.184 4.184 30 C -0.173 4.173 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.387 0.613 45 H 0.278 0.722 46 H 0.110 0.890 47 H 0.090 0.910 48 H 0.099 0.901 49 H 0.103 0.897 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.844 13.810 -12.089 23.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.056 4.056 3 H 0.080 0.920 4 C -0.168 4.168 5 C 0.321 3.679 6 O -0.450 6.450 7 N -0.353 5.353 8 C -0.060 4.060 9 C -0.049 4.049 10 H 0.141 0.859 11 C -0.160 4.160 12 C 0.008 3.992 13 H 0.153 0.847 14 C -0.097 4.097 15 N -0.234 5.234 16 C -0.093 4.093 17 C 0.244 3.756 18 O -0.482 6.482 19 N -0.233 5.233 20 C -0.451 4.451 21 H 0.079 0.921 22 C -0.211 4.211 23 N -0.574 5.574 24 Si 0.778 3.222 25 H -0.185 1.185 26 H -0.201 1.201 27 H -0.156 1.156 28 C -0.173 4.173 29 C -0.221 4.221 30 C -0.210 4.210 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.131 0.869 44 H 0.222 0.778 45 H 0.088 0.912 46 H 0.128 0.872 47 H 0.108 0.892 48 H 0.118 0.882 49 H 0.121 0.879 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.282 13.724 -11.208 23.399 hybrid contribution 1.048 -0.100 -1.225 1.615 sum -14.234 13.624 -12.433 23.298 Atomic orbital electron populations 1.21849 0.94556 1.01716 1.02033 1.20361 0.96170 0.98062 0.91032 0.92048 1.21746 1.03486 1.00392 0.91223 1.20746 0.78122 0.85112 0.83872 1.90645 1.41897 1.26124 1.86311 1.49437 1.55080 1.25120 1.05696 1.23280 0.96497 0.87744 0.98507 1.24722 0.92077 0.97169 0.90960 0.85915 1.23959 0.95630 0.95332 1.01035 1.24663 0.97127 0.96445 0.80997 0.84708 1.24196 0.93321 0.91593 1.00585 1.64707 1.01922 1.02682 1.54090 1.22174 0.93543 0.95157 0.98429 1.20564 0.82035 0.89542 0.83422 1.90507 1.62381 1.55850 1.39477 1.42043 1.20430 1.16828 1.43988 1.18991 1.04517 0.93910 1.27679 0.92099 1.26016 0.97096 0.98268 0.99715 1.69796 1.19944 1.22157 1.45486 0.85466 0.79485 0.78695 0.78542 1.18489 1.20135 1.15580 1.22320 1.04283 0.99404 0.91248 1.23081 0.92913 1.01998 1.04136 1.22978 0.97763 1.03397 0.96872 0.92268 0.92531 0.92859 0.88297 0.87665 0.89817 0.90895 0.88883 0.87885 0.87678 0.92024 0.90579 0.86852 0.77794 0.91236 0.87161 0.89157 0.88210 0.87866 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.77 71.98 0.63 -2.09 16 2 C -0.04 -0.69 2.19 -10.80 -0.02 -0.71 16 3 H 0.06 1.33 7.71 -2.38 -0.02 1.31 16 4 C -0.13 -2.42 4.44 29.85 0.13 -2.29 16 5 C 0.53 12.58 7.61 87.66 0.67 13.25 16 6 O -0.57 -16.60 14.31 -3.04 -0.04 -16.64 16 7 N -0.62 -13.84 2.95 -762.93 -2.25 -16.08 16 8 C 0.06 1.52 5.62 87.16 0.49 2.01 16 9 C 0.06 1.61 4.13 46.85 0.19 1.80 16 10 H 0.12 4.26 6.35 -2.39 -0.02 4.24 16 11 C -0.12 -2.49 6.85 33.59 0.23 -2.26 16 12 C 0.11 2.27 5.34 47.96 0.26 2.53 16 13 H 0.14 2.59 8.05 -2.39 -0.02 2.57 16 14 C 0.03 0.67 6.40 87.98 0.56 1.24 16 15 N -0.51 -14.28 5.17 -838.93 -4.34 -18.62 16 16 C 0.04 1.13 4.66 85.56 0.40 1.53 16 17 C 0.46 19.15 7.44 87.66 0.65 19.81 16 18 O -0.60 -30.15 13.57 -3.08 -0.04 -30.20 16 19 N -0.59 -26.41 5.09 -306.98 -1.56 -27.97 16 20 C -0.32 -17.99 10.16 84.04 0.85 -17.14 16 21 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 22 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 23 N -0.93 -54.79 13.96 21.67 0.30 -54.49 16 24 Si 0.96 37.69 27.74 68.60 1.90 39.59 16 25 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 26 H -0.28 -10.86 7.11 99.48 0.71 -10.16 16 27 H -0.23 -7.65 6.52 99.48 0.65 -7.00 16 28 C -0.15 -2.41 5.15 -10.79 -0.06 -2.47 16 29 C -0.18 -2.77 10.18 30.59 0.31 -2.46 16 30 C -0.17 -2.42 9.73 30.59 0.30 -2.13 16 31 H 0.06 1.01 7.29 -2.39 -0.02 0.99 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 1.25 5.95 -2.39 -0.01 1.23 16 34 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 1.86 5.19 -2.38 -0.01 1.85 16 38 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.06 1.32 7.62 -2.39 -0.02 1.31 16 42 H 0.08 1.97 5.64 -2.39 -0.01 1.96 16 43 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 44 H 0.39 14.50 5.76 -92.71 -0.53 13.97 16 45 H 0.28 14.99 8.31 -92.71 -0.77 14.22 16 46 H 0.11 1.61 8.11 -2.39 -0.02 1.59 16 47 H 0.09 1.41 8.05 -2.39 -0.02 1.39 16 48 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 50 H 0.09 1.31 7.61 -2.39 -0.02 1.29 16 Total: -1.00 -71.45 388.12 0.40 -71.06 By element: Atomic # 1 Polarization: 42.56 SS G_CDS: 0.36 Total: 42.91 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 6.07 Total: 10.43 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -7.84 Total: -117.16 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -0.09 Total: -46.83 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 1.90 Total: 39.59 kcal Total: -71.45 0.40 -71.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665432682.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.106 kcal (2) G-P(sol) polarization free energy of solvation -71.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds