Wall clock time and date at job start Tue Mar 31 2020 19:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09005 * 109.47100 * 2 1 4 4 N 1.46906 * 109.47664 * 239.99996 * 2 1 3 5 5 C 1.46903 * 110.99529 * 84.99551 * 4 2 1 6 6 C 1.50706 * 109.46595 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00296 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99629 * 180.02562 * 6 5 4 9 9 C 1.37105 * 119.99733 * 179.97438 * 8 6 5 10 10 H 1.07991 * 119.99886 * 0.02562 * 9 8 6 11 11 C 1.38951 * 119.99643 * 180.02562 * 9 8 6 12 12 N 1.31414 * 120.00328 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99657 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47188 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46992 * 120.00183 * 13 11 9 16 16 H 1.48493 * 109.47084 * 239.99916 * 13 11 9 17 17 C 1.53001 * 109.47272 * 120.00088 * 2 1 3 18 18 H 1.09003 * 110.88904 * 59.98168 * 17 2 1 19 19 C 1.55157 * 111.00246 * 296.09750 * 17 2 1 20 20 C 1.54322 * 102.94418 * 206.41988 * 19 17 2 21 21 N 1.47026 * 107.26992 * 22.20033 * 20 19 17 22 22 C 1.34773 * 125.64690 * 181.01568 * 21 20 19 23 23 O 1.21608 * 120.00505 * 5.40939 * 22 21 20 24 24 C 1.47106 * 119.99509 * 185.41236 * 22 21 20 25 25 C 1.32613 * 124.61549 * 186.01019 * 24 22 21 26 26 C 1.51112 * 110.75808 * 180.02562 * 25 24 22 27 27 C 1.54580 * 104.84118 * 16.59886 * 26 25 24 28 28 C 1.51107 * 124.62411 * 5.70958 * 24 22 21 29 29 C 1.47425 * 108.70114 * 1.05216 * 21 20 19 30 30 H 1.09003 * 109.46806 * 185.16432 * 1 2 3 31 31 H 1.08996 * 109.47844 * 305.16484 * 1 2 3 32 32 H 1.09002 * 109.47061 * 65.17006 * 1 2 3 33 33 H 1.00901 * 110.99644 * 321.04711 * 4 2 1 34 34 H 1.09000 * 109.47099 * 60.00807 * 5 4 2 35 35 H 1.08994 * 109.47638 * 300.00437 * 5 4 2 36 36 H 0.96996 * 120.00494 * 0.02562 * 8 6 5 37 37 H 0.96996 * 120.00048 * 180.02562 * 12 11 9 38 38 H 1.08998 * 110.72038 * 324.78960 * 19 17 2 39 39 H 1.09009 * 110.71755 * 88.06118 * 19 17 2 40 40 H 1.09005 * 109.88230 * 141.60851 * 20 19 17 41 41 H 1.08997 * 109.88596 * 262.62729 * 20 19 17 42 42 H 1.07994 * 124.62804 * 0.02562 * 25 24 22 43 43 H 1.09006 * 110.36911 * 135.43505 * 26 25 24 44 44 H 1.09003 * 110.37070 * 257.65270 * 26 25 24 45 45 H 1.08997 * 110.98375 * 93.07163 * 27 26 25 46 46 H 1.09002 * 110.98459 * 216.83775 * 27 26 25 47 47 H 1.09007 * 110.36301 * 282.24238 * 28 24 22 48 48 H 1.08999 * 110.36857 * 44.55882 * 28 24 22 49 49 H 1.09001 * 110.36833 * 217.03503 * 29 21 20 50 50 H 1.09004 * 110.36674 * 94.71649 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0824 0.2227 -2.3469 6 6 2.5874 -0.5218 -3.5560 7 8 2.8671 -1.6988 -3.4704 8 7 2.7283 0.1206 -4.7324 9 6 3.1882 -0.5565 -5.8323 10 1 3.4372 -1.6046 -5.7561 11 6 3.3340 0.1058 -7.0451 12 7 3.0315 1.3813 -7.1377 13 14 3.9599 -0.8169 -8.5438 14 1 4.2265 -2.2313 -8.1786 15 1 2.9361 -0.7680 -9.6184 16 1 5.2141 -0.1848 -9.0260 17 6 2.0399 -0.7213 1.2492 18 1 1.6892 -1.7530 1.2727 19 6 1.6246 0.0369 2.5376 20 6 2.7180 -0.3719 3.5470 21 7 3.8897 -0.8028 2.7705 22 6 5.0502 -1.2552 3.2854 23 8 5.1576 -1.4264 4.4845 24 6 6.1868 -1.5420 2.3967 25 6 7.3273 -2.0950 2.7868 26 6 8.2760 -2.2457 1.6203 27 6 7.7087 -1.3134 0.5256 28 6 6.2116 -1.2525 0.9138 29 6 3.5853 -0.6573 1.3353 30 1 -0.3633 -1.0235 0.0925 31 1 -0.3635 0.5918 0.8400 32 1 -0.3633 0.4316 -0.9327 33 1 1.4496 -1.4979 -1.4100 34 1 2.7588 1.0463 -2.1182 35 1 1.0871 0.6164 -2.5525 36 1 2.5050 1.0620 -4.8008 37 1 3.1328 1.8436 -7.9844 38 1 1.6360 1.1141 2.3718 39 1 0.6427 -0.2915 2.8788 40 1 2.9816 0.4804 4.1734 41 1 2.3604 -1.1925 4.1689 42 1 7.5481 -2.3965 3.8000 43 1 9.2799 -1.9299 1.9045 44 1 8.2883 -3.2785 1.2722 45 1 8.1699 -0.3270 0.5754 46 1 7.8352 -1.7516 -0.4644 47 1 5.6443 -2.0081 0.3703 48 1 5.8099 -0.2591 0.7144 49 1 4.0310 -1.4744 0.7682 50 1 3.9464 0.3028 0.9664 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672198797.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:20 Heat of formation + Delta-G solvation = -55.912940 kcal Electronic energy + Delta-G solvation = -29328.760242 eV Core-core repulsion = 25355.715035 eV Total energy + Delta-G solvation = -3973.045207 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.50530 -38.81028 -38.14523 -37.50101 -35.87634 -33.93753 -32.23550 -31.24760 -30.38809 -29.26726 -28.91265 -28.00642 -26.35135 -24.37855 -24.05137 -22.25294 -21.21682 -20.69189 -20.22371 -19.19919 -18.41470 -17.90963 -16.77813 -16.68335 -16.22016 -15.89188 -15.39026 -15.21055 -14.73599 -14.57698 -14.26620 -14.07980 -13.83205 -13.78758 -13.49273 -13.24277 -12.97499 -12.78134 -12.52965 -12.41688 -12.20901 -12.15737 -11.90588 -11.82423 -11.62051 -11.59573 -11.42787 -11.37549 -11.27607 -11.08646 -11.04294 -10.72705 -10.63744 -10.36823 -10.25059 -9.97243 -9.54617 -9.15120 -8.61802 -8.49938 -8.09102 -7.98574 -6.44644 -3.85436 1.27953 2.90450 3.14037 3.19812 3.25010 3.31890 3.87917 3.98099 4.18840 4.21519 4.42943 4.47407 4.55665 4.74979 4.89273 4.92203 4.99344 5.08431 5.12737 5.15058 5.17971 5.22904 5.30029 5.40514 5.44995 5.53778 5.57427 5.62494 5.64884 5.67393 5.70903 5.72634 5.79367 5.80893 5.90871 5.92979 5.97189 6.04647 6.05223 6.13126 6.18246 6.25915 6.34696 6.43329 7.17754 7.42120 7.52704 7.61513 8.03776 8.09066 8.58203 9.15324 9.51664 10.02761 10.73117 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011012 B = 0.002880 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.021189 B = 9721.493342 C =11880.226367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.094 3.906 3 H 0.080 0.920 4 N -0.663 5.663 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.583 6.583 8 N -0.564 5.564 9 C -0.298 4.298 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.928 3.072 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.281 1.281 17 C -0.086 4.086 18 H 0.086 0.914 19 C -0.127 4.127 20 C 0.109 3.891 21 N -0.615 5.615 22 C 0.582 3.418 23 O -0.551 6.551 24 C -0.188 4.188 25 C -0.078 4.078 26 C -0.107 4.107 27 C -0.125 4.125 28 C -0.093 4.093 29 C 0.108 3.892 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.351 0.649 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.135 0.865 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.078 0.922 49 H 0.096 0.904 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.515 0.073 17.831 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.017 4.017 3 H 0.098 0.902 4 N -0.295 5.295 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.467 6.467 8 N -0.201 5.201 9 C -0.428 4.428 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.755 3.245 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.207 1.207 17 C -0.106 4.106 18 H 0.104 0.896 19 C -0.166 4.166 20 C -0.014 4.014 21 N -0.348 5.348 22 C 0.373 3.627 23 O -0.431 6.431 24 C -0.191 4.191 25 C -0.097 4.097 26 C -0.143 4.143 27 C -0.163 4.163 28 C -0.130 4.130 29 C -0.014 4.014 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.171 0.829 34 H 0.103 0.897 35 H 0.061 0.939 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.153 0.847 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.106 0.894 48 H 0.097 0.903 49 H 0.114 0.886 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.504 -0.629 18.520 18.591 hybrid contribution -0.922 0.427 -1.093 1.493 sum 0.582 -0.202 17.426 17.437 Atomic orbital electron populations 1.22517 0.97094 1.02369 1.02260 1.21515 0.92562 0.97733 0.89917 0.90213 1.60183 1.57638 1.09159 1.02501 1.21696 0.99898 0.95687 0.90901 1.19812 0.85151 0.88239 0.84169 1.90524 1.55321 1.16236 1.84623 1.41878 1.57783 1.12436 1.07987 1.19744 1.39876 0.96429 0.86756 0.87877 1.25256 0.97663 0.95760 0.99253 1.69616 1.48749 1.08841 1.27100 0.85819 0.78267 0.79659 0.80723 1.19202 1.20794 1.20730 1.22347 0.94639 1.00330 0.93314 0.89591 1.22732 0.98151 1.01013 0.94677 1.21894 0.85405 0.99611 0.94479 1.48401 1.13560 1.64288 1.08573 1.17690 0.81380 0.76494 0.87151 1.90766 1.83011 1.53696 1.15600 1.21800 0.95073 1.05730 0.96479 1.24019 0.93629 0.92803 0.99297 1.21486 0.98472 1.00949 0.93439 1.22497 0.94994 0.99902 0.98866 1.21602 0.97434 1.02891 0.91049 1.22678 0.95466 1.02970 0.80263 0.92268 0.92083 0.92335 0.82939 0.89695 0.93878 0.77507 0.91925 0.90381 0.89946 0.91629 0.91501 0.84741 0.90413 0.89609 0.90928 0.90134 0.89355 0.90317 0.88604 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 8.92 37.15 0.33 -1.30 16 2 C 0.09 0.95 2.09 -67.71 -0.14 0.81 16 3 H 0.08 0.79 7.80 -51.93 -0.40 0.38 16 4 N -0.66 -9.16 5.63 -107.99 -0.61 -9.77 16 5 C 0.05 0.81 5.96 -4.97 -0.03 0.78 16 6 C 0.44 9.78 7.82 -10.98 -0.09 9.69 16 7 O -0.58 -14.98 15.78 5.55 0.09 -14.89 16 8 N -0.56 -13.72 5.29 -10.96 -0.06 -13.77 16 9 C -0.30 -8.09 9.68 -14.93 -0.14 -8.23 16 10 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.00 13.05 55.50 0.72 -23.27 16 13 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 14 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 C -0.09 -0.82 2.77 -88.47 -0.25 -1.07 16 18 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 19 C -0.13 -0.99 5.56 -24.90 -0.14 -1.13 16 20 C 0.11 1.10 6.87 -3.06 -0.02 1.07 16 21 N -0.62 -7.40 3.33 -171.91 -0.57 -7.97 16 22 C 0.58 8.23 7.81 -12.66 -0.10 8.13 16 23 O -0.55 -9.41 17.11 5.27 0.09 -9.32 16 24 C -0.19 -2.30 6.02 -102.73 -0.62 -2.92 16 25 C -0.08 -0.84 10.43 -36.01 -0.38 -1.22 16 26 C -0.11 -0.94 6.80 -26.85 -0.18 -1.12 16 27 C -0.13 -1.22 7.17 -24.96 -0.18 -1.40 16 28 C -0.09 -1.03 4.61 -26.75 -0.12 -1.16 16 29 C 0.11 1.18 4.48 -2.53 -0.01 1.17 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.45 7.60 -51.93 -0.39 0.06 16 32 H 0.06 0.57 7.35 -51.93 -0.38 0.19 16 33 H 0.35 5.20 8.18 -39.29 -0.32 4.88 16 34 H 0.08 1.24 8.06 -51.93 -0.42 0.82 16 35 H 0.04 0.62 7.36 -51.93 -0.38 0.24 16 36 H 0.39 9.13 7.90 -40.82 -0.32 8.81 16 37 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.08 0.55 8.04 -51.93 -0.42 0.14 16 39 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.13 1.41 8.04 -52.49 -0.42 0.98 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.09 1.04 6.82 -51.93 -0.35 0.69 16 48 H 0.08 0.88 6.33 -51.93 -0.33 0.55 16 49 H 0.10 1.16 5.39 -51.93 -0.28 0.88 16 50 H 0.07 0.77 7.21 -51.93 -0.37 0.40 16 LS Contribution 398.38 15.07 6.00 6.00 Total: -1.00 -32.01 398.38 -9.63 -41.64 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -8.12 Total: 13.17 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -2.16 Total: 2.60 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.51 Total: -54.78 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: 0.18 Total: -24.20 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.01 -9.63 -41.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672198797.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.274 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds