Wall clock time and date at job start Tue Mar 31 2020 19:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47472 * 2 1 4 4 N 1.46904 * 109.47217 * 240.00097 * 2 1 3 5 5 C 1.46902 * 110.99939 * 84.99964 * 4 2 1 6 6 C 1.50697 * 109.47300 * 180.02562 * 5 4 2 7 7 O 1.21298 * 119.99687 * 0.02562 * 6 5 4 8 8 N 1.34768 * 120.00104 * 180.02562 * 6 5 4 9 9 C 1.37105 * 120.00313 * 180.02562 * 8 6 5 10 10 H 1.07998 * 119.99388 * 0.02562 * 9 8 6 11 11 C 1.38946 * 120.00307 * 179.97438 * 9 8 6 12 12 N 1.31407 * 120.00051 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99980 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47315 * 59.99885 * 13 11 9 15 15 H 1.48501 * 109.47206 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47005 * 299.99847 * 13 11 9 17 17 C 1.53000 * 109.47088 * 120.00300 * 2 1 3 18 18 H 1.08999 * 110.88246 * 57.57131 * 17 2 1 19 19 C 1.55156 * 111.00379 * 181.44930 * 17 2 1 20 20 C 1.54333 * 103.09721 * 153.52583 * 19 17 2 21 21 N 1.47321 * 107.12037 * 338.02613 * 20 19 17 22 22 C 1.34772 * 125.61270 * 178.82132 * 21 20 19 23 23 O 1.21614 * 120.00086 * 175.41816 * 22 21 20 24 24 C 1.47103 * 120.00052 * 355.41659 * 22 21 20 25 25 C 1.32617 * 124.62050 * 173.38417 * 24 22 21 26 26 C 1.51110 * 110.75739 * 179.84369 * 25 24 22 27 27 C 1.54579 * 104.90223 * 343.80081 * 26 25 24 28 28 C 1.51114 * 124.62326 * 353.68004 * 24 22 21 29 29 C 1.47420 * 108.73562 * 358.69994 * 21 20 19 30 30 H 1.08998 * 109.46999 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46932 * 300.00299 * 1 2 3 32 32 H 1.09001 * 109.46974 * 59.99526 * 1 2 3 33 33 H 1.00893 * 111.00118 * 208.95523 * 4 2 1 34 34 H 1.08993 * 109.47392 * 300.00323 * 5 4 2 35 35 H 1.08999 * 109.46448 * 60.00393 * 5 4 2 36 36 H 0.96998 * 120.00626 * 0.02562 * 8 6 5 37 37 H 0.97004 * 120.00037 * 179.97438 * 12 11 9 38 38 H 1.09002 * 110.72228 * 271.97816 * 19 17 2 39 39 H 1.08994 * 110.71942 * 35.07873 * 19 17 2 40 40 H 1.08999 * 109.87733 * 97.31875 * 20 19 17 41 41 H 1.09006 * 109.87718 * 218.47858 * 20 19 17 42 42 H 1.07996 * 124.61635 * 359.97438 * 25 24 22 43 43 H 1.08995 * 110.51677 * 224.84650 * 26 25 24 44 44 H 1.09001 * 110.25025 * 102.61524 * 26 25 24 45 45 H 1.08999 * 110.98018 * 266.70949 * 27 26 25 46 46 H 1.09001 * 110.98494 * 142.91788 * 27 26 25 47 47 H 1.09010 * 110.36263 * 315.43698 * 28 24 22 48 48 H 1.09000 * 110.36594 * 77.64373 * 28 24 22 49 49 H 1.09004 * 110.36605 * 265.44570 * 29 21 20 50 50 H 1.08997 * 110.45950 * 143.17082 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5217 -3.5561 7 8 2.8669 -1.6989 -3.4705 8 7 2.7283 0.1206 -4.7324 9 6 3.1871 -0.5567 -5.8327 10 1 3.4352 -1.6050 -5.7567 11 6 3.3319 0.1054 -7.0457 12 7 3.0295 1.3809 -7.1382 13 14 3.9577 -0.8173 -8.5445 14 1 3.0358 -1.9390 -8.8559 15 1 4.0217 0.1080 -9.7043 16 1 5.3137 -1.3541 -8.2647 17 6 2.0400 -0.7213 1.2492 18 1 1.6546 -1.7399 1.2942 19 6 3.5906 -0.7104 1.3036 20 6 3.8882 -0.8138 2.8144 21 7 2.6858 -0.3471 3.5263 22 6 2.5337 -0.3032 4.8647 23 8 1.5269 0.1794 5.3467 24 6 3.5855 -0.8391 5.7425 25 6 3.5907 -0.7319 7.0643 26 6 4.8147 -1.3963 7.6506 27 6 5.3618 -2.2933 6.5167 28 6 4.8104 -1.5812 5.2605 29 6 1.6781 0.0665 2.5329 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.9173 -1.1205 -1.0288 34 1 1.0872 0.6164 -2.5525 35 1 2.7589 1.0461 -2.1181 36 1 2.5051 1.0621 -4.8009 37 1 3.1309 1.8432 -7.9850 38 1 4.0012 -1.5676 0.7701 39 1 3.9842 0.2206 0.8959 40 1 4.0975 -1.8498 3.0809 41 1 4.7411 -0.1841 3.0681 42 1 2.8236 -0.2389 7.6429 43 1 4.5435 -2.0015 8.5156 44 1 5.5539 -0.6457 7.9305 45 1 4.9675 -3.3064 6.5959 46 1 6.4518 -2.2993 6.5152 47 1 4.5361 -2.3123 4.4998 48 1 5.5467 -0.8815 4.8651 49 1 1.7431 1.1392 2.3507 50 1 0.6771 -0.2000 2.8721 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672198798.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:22 Heat of formation + Delta-G solvation = -76.380212 kcal Electronic energy + Delta-G solvation = -28543.045144 eV Core-core repulsion = 24569.112410 eV Total energy + Delta-G solvation = -3973.932734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.50343 -40.24821 -39.45499 -38.49183 -36.99275 -35.88716 -33.38117 -33.01344 -31.45278 -30.51395 -29.85037 -28.42558 -28.12132 -26.22840 -24.97418 -23.02296 -21.91726 -21.60761 -21.22541 -20.86898 -19.88639 -19.41598 -18.10922 -17.81243 -17.27818 -17.05886 -16.73269 -16.49679 -16.26446 -16.06990 -15.63060 -15.27964 -15.09568 -14.71938 -14.51184 -14.27275 -14.06134 -13.71068 -13.66217 -13.50899 -13.47294 -13.29032 -13.20402 -12.98740 -12.89994 -12.84279 -12.60253 -12.42210 -12.33840 -12.12453 -12.07976 -11.94899 -11.83278 -11.67421 -11.48503 -11.38780 -11.07025 -10.31919 -10.10481 -10.00305 -9.54867 -9.31233 -8.45239 -5.93987 0.33686 1.40898 1.42872 1.53664 1.90527 2.06954 2.16160 2.30157 2.87738 3.22181 3.29833 3.46134 3.53022 3.60983 3.67488 3.84506 4.04563 4.10089 4.25434 4.26102 4.30699 4.31667 4.34175 4.40552 4.49029 4.54941 4.58384 4.63148 4.74235 4.76843 4.81058 4.87695 4.92215 4.96140 4.99886 5.02181 5.08578 5.15348 5.18415 5.24477 5.35778 5.41270 5.42566 5.46324 5.53736 5.92452 6.13712 6.41581 6.47619 6.61452 7.02871 7.13852 7.57925 8.12917 8.71818 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023723 B = 0.001862 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.025538 B =15035.457288 C =15840.050100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.100 3.900 3 H 0.056 0.944 4 N -0.675 5.675 5 C 0.065 3.935 6 C 0.439 3.561 7 O -0.622 6.622 8 N -0.574 5.574 9 C -0.334 4.334 10 H 0.080 0.920 11 C -0.014 4.014 12 N -0.920 5.920 13 Si 0.993 3.007 14 H -0.273 1.273 15 H -0.272 1.272 16 H -0.270 1.270 17 C -0.090 4.090 18 H 0.089 0.911 19 C -0.135 4.135 20 C 0.097 3.903 21 N -0.613 5.613 22 C 0.571 3.429 23 O -0.593 6.593 24 C -0.212 4.212 25 C -0.072 4.072 26 C -0.103 4.103 27 C -0.122 4.122 28 C -0.093 4.093 29 C 0.116 3.884 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.348 0.652 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.396 0.604 37 H 0.277 0.723 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.127 0.873 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.072 0.928 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.006 -1.519 26.951 27.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.010 4.010 3 H 0.074 0.926 4 N -0.309 5.309 5 C -0.067 4.067 6 C 0.226 3.774 7 O -0.508 6.508 8 N -0.211 5.211 9 C -0.463 4.463 10 H 0.098 0.902 11 C -0.213 4.213 12 N -0.561 5.561 13 Si 0.816 3.184 14 H -0.198 1.198 15 H -0.196 1.196 16 H -0.196 1.196 17 C -0.110 4.110 18 H 0.107 0.893 19 C -0.172 4.172 20 C -0.024 4.024 21 N -0.345 5.345 22 C 0.363 3.637 23 O -0.476 6.476 24 C -0.215 4.215 25 C -0.092 4.092 26 C -0.140 4.140 27 C -0.159 4.159 28 C -0.129 4.129 29 C -0.007 4.007 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.168 0.832 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.145 0.855 43 H 0.111 0.889 44 H 0.118 0.882 45 H 0.094 0.906 46 H 0.114 0.886 47 H 0.102 0.898 48 H 0.109 0.891 49 H 0.090 0.910 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.076 -2.161 26.973 27.365 hybrid contribution 0.400 0.892 -0.881 1.316 sum 4.476 -1.269 26.092 26.504 Atomic orbital electron populations 1.21842 0.94182 1.02186 1.01766 1.21476 0.96242 0.95808 0.87479 0.92593 1.60124 1.34960 1.32484 1.03381 1.21567 1.02111 0.93788 0.89245 1.20855 0.83148 0.87983 0.85381 1.90488 1.56632 1.18090 1.85609 1.41936 1.58344 1.12554 1.08256 1.19636 1.42182 0.95954 0.88564 0.90222 1.26037 0.97275 0.96625 1.01388 1.69666 1.48616 1.09674 1.28173 0.84992 0.78758 0.77787 0.76823 1.19830 1.19609 1.19557 1.22383 0.96105 1.00131 0.92354 0.89280 1.22815 0.94889 1.04205 0.95340 1.22661 0.87199 1.01490 0.91098 1.48491 1.17855 1.63555 1.04553 1.18214 0.86400 0.77984 0.81096 1.90760 1.32716 1.48706 1.75430 1.21856 0.98082 1.06446 0.95124 1.24336 0.97256 0.93093 0.94491 1.21541 0.94111 0.99020 0.99331 1.22489 1.01904 0.98718 0.92797 1.21632 0.93177 0.98677 0.99432 1.22205 0.92385 0.99027 0.87103 0.92729 0.91079 0.92985 0.83197 0.88248 0.91508 0.77024 0.91341 0.88686 0.90123 0.88752 0.89450 0.85536 0.88874 0.88227 0.90639 0.88638 0.89801 0.89132 0.90992 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.26 71.98 0.67 -2.41 16 2 C 0.10 2.17 2.16 44.91 0.10 2.27 16 3 H 0.06 1.13 7.76 -2.39 -0.02 1.12 16 4 N -0.68 -19.91 5.93 -495.58 -2.94 -22.85 16 5 C 0.07 2.16 5.97 85.56 0.51 2.67 16 6 C 0.44 20.44 7.82 87.66 0.69 21.12 16 7 O -0.62 -33.69 15.78 -3.09 -0.05 -33.74 16 8 N -0.57 -29.08 5.29 -306.99 -1.62 -30.70 16 9 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 10 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 11 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 12 N -0.92 -49.36 13.05 21.66 0.28 -49.07 16 13 Si 0.99 42.55 29.55 68.60 2.03 44.58 16 14 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 16 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 17 C -0.09 -1.69 2.69 -9.40 -0.03 -1.72 16 18 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 19 C -0.13 -2.09 5.43 31.79 0.17 -1.92 16 20 C 0.10 1.35 5.35 86.67 0.46 1.81 16 21 N -0.61 -12.34 3.33 -815.29 -2.72 -15.06 16 22 C 0.57 13.91 7.81 86.57 0.68 14.58 16 23 O -0.59 -19.28 17.07 -4.08 -0.07 -19.35 16 24 C -0.21 -3.72 6.03 -18.57 -0.11 -3.83 16 25 C -0.07 -1.09 10.44 24.65 0.26 -0.83 16 26 C -0.10 -0.84 6.80 30.52 0.21 -0.63 16 27 C -0.12 -0.89 7.16 31.67 0.23 -0.66 16 28 C -0.09 -0.98 4.76 30.51 0.15 -0.84 16 29 C 0.12 2.33 5.55 86.85 0.48 2.81 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.29 7.45 -2.39 -0.02 1.28 16 32 H 0.05 1.18 7.45 -2.39 -0.02 1.17 16 33 H 0.35 10.39 6.73 -89.70 -0.60 9.79 16 34 H 0.10 3.06 7.44 -2.39 -0.02 3.04 16 35 H 0.07 1.91 8.05 -2.39 -0.02 1.90 16 36 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 37 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 38 H 0.09 1.46 7.73 -2.39 -0.02 1.44 16 39 H 0.08 1.24 8.04 -2.39 -0.02 1.22 16 40 H 0.09 1.07 5.51 -2.39 -0.01 1.06 16 41 H 0.09 0.98 7.25 -2.38 -0.02 0.96 16 42 H 0.13 2.11 8.04 -2.91 -0.02 2.09 16 43 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.08 0.84 5.65 -2.38 -0.01 0.83 16 48 H 0.09 0.77 7.32 -2.39 -0.02 0.75 16 49 H 0.07 1.41 8.01 -2.38 -0.02 1.40 16 50 H 0.07 1.56 8.01 -2.39 -0.02 1.54 16 Total: -1.00 -73.20 396.39 0.27 -72.92 By element: Atomic # 1 Polarization: 39.44 SS G_CDS: -0.37 Total: 39.06 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 5.73 Total: 14.20 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -7.00 Total: -117.68 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -0.12 Total: -53.09 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -73.20 0.27 -72.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672198798.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.456 kcal (2) G-P(sol) polarization free energy of solvation -73.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds