Wall clock time and date at job start Tue Mar 31 2020 19:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47120 * 2 1 4 4 N 1.46896 * 109.47164 * 120.00025 * 2 1 3 5 5 C 1.46908 * 111.00068 * 274.99827 * 4 2 1 6 6 C 1.50696 * 109.46991 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00345 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99718 * 180.02562 * 6 5 4 9 9 C 1.37099 * 120.00230 * 179.97438 * 8 6 5 10 10 H 1.08005 * 119.99824 * 0.02562 * 9 8 6 11 11 C 1.38948 * 120.00302 * 179.97438 * 9 8 6 12 12 N 1.31408 * 119.99782 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00020 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47125 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47073 * 120.00503 * 13 11 9 16 16 H 1.48506 * 109.46845 * 240.00090 * 13 11 9 17 17 C 1.53005 * 109.47111 * 240.00289 * 2 1 3 18 18 H 1.09005 * 110.88189 * 296.11563 * 17 2 1 19 19 C 1.55157 * 111.03534 * 172.21468 * 17 2 1 20 20 C 1.54320 * 102.93930 * 206.40417 * 19 17 2 21 21 N 1.47025 * 107.27222 * 22.19764 * 20 19 17 22 22 C 1.34776 * 125.65092 * 181.09877 * 21 20 19 23 23 O 1.21606 * 120.00112 * 174.49128 * 22 21 20 24 24 C 1.47110 * 119.99623 * 354.48316 * 22 21 20 25 25 C 1.32616 * 124.61705 * 185.51294 * 24 22 21 26 26 C 1.51113 * 110.75594 * 179.97438 * 25 24 22 27 27 C 1.54577 * 104.83973 * 16.59548 * 26 25 24 28 28 C 1.51106 * 124.62156 * 5.20521 * 24 22 21 29 29 C 1.47420 * 108.70359 * 1.05348 * 21 20 19 30 30 H 1.09002 * 109.47558 * 60.00025 * 1 2 3 31 31 H 1.09004 * 109.47120 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47025 * 299.99830 * 1 2 3 33 33 H 1.00896 * 111.00387 * 38.95626 * 4 2 1 34 34 H 1.08998 * 109.47107 * 300.00689 * 5 4 2 35 35 H 1.09000 * 109.46749 * 60.00204 * 5 4 2 36 36 H 0.97001 * 120.00185 * 359.97438 * 8 6 5 37 37 H 0.97005 * 120.00062 * 179.97438 * 12 11 9 38 38 H 1.08999 * 110.71759 * 88.04445 * 19 17 2 39 39 H 1.08998 * 110.72211 * 324.76764 * 19 17 2 40 40 H 1.08996 * 109.88963 * 262.77222 * 20 19 17 41 41 H 1.09001 * 109.88331 * 141.60873 * 20 19 17 42 42 H 1.08004 * 124.61867 * 0.02562 * 25 24 22 43 43 H 1.09008 * 110.36197 * 135.43557 * 26 25 24 44 44 H 1.08996 * 110.36579 * 257.64303 * 26 25 24 45 45 H 1.08997 * 110.98014 * 93.07528 * 27 26 25 46 46 H 1.09003 * 110.98093 * 216.83239 * 27 26 25 47 47 H 1.08996 * 110.36903 * 282.24456 * 28 24 22 48 48 H 1.09003 * 110.36585 * 44.56689 * 28 24 22 49 49 H 1.08998 * 110.36701 * 94.70924 * 29 21 20 50 50 H 1.08994 * 110.37011 * 216.92851 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5885 -0.5215 3.5557 7 8 2.8697 -1.6982 3.4697 8 7 2.7287 0.1206 4.7323 9 6 3.1886 -0.5564 5.8322 10 1 3.4389 -1.6042 5.7556 11 6 3.3336 0.1057 7.0452 12 7 3.0295 1.3807 7.1382 13 14 3.9609 -0.8167 8.5436 14 1 4.2292 -2.2307 8.1779 15 1 5.2143 -0.1830 9.0260 16 1 2.9371 -0.7695 9.6182 17 6 2.0400 -0.7212 -1.2493 18 1 1.7468 -1.7710 -1.2388 19 6 3.5784 -0.5747 -1.3879 20 6 3.8030 -0.7125 -2.9085 21 7 2.5326 -0.3795 -3.5694 22 6 2.3091 -0.4012 -4.8983 23 8 1.1896 -0.2034 -5.3300 24 6 3.4197 -0.6641 -5.8266 25 6 3.3271 -0.6041 -7.1482 26 6 4.6541 -0.9302 -7.7933 27 6 5.4783 -1.6150 -6.6792 28 6 4.8228 -1.0327 -5.4041 29 6 1.5433 -0.0189 -2.5376 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.4496 -1.4979 1.4100 34 1 2.7588 1.0463 2.1182 35 1 1.0871 0.6163 2.5525 36 1 2.5042 1.0618 4.8010 37 1 3.1303 1.8429 7.9851 38 1 4.0917 -1.3708 -0.8486 39 1 3.9058 0.4039 -1.0368 40 1 4.0892 -1.7362 -3.1498 41 1 4.5815 -0.0217 -3.2323 42 1 2.4263 -0.3552 -7.6895 43 1 4.5108 -1.6112 -8.6323 44 1 5.1483 -0.0176 -8.1266 45 1 5.3659 -2.6983 -6.7205 46 1 6.5289 -1.3309 -6.7403 47 1 5.3627 -0.1476 -5.0679 48 1 4.7963 -1.7844 -4.6152 49 1 1.5199 1.0616 -2.3956 50 1 0.5551 -0.3858 -2.8148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672198800.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:30 Heat of formation + Delta-G solvation = -54.539653 kcal Electronic energy + Delta-G solvation = -28501.712205 eV Core-core repulsion = 24528.726549 eV Total energy + Delta-G solvation = -3972.985656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.63687 -38.89941 -38.20215 -37.59341 -35.96048 -33.92466 -32.15192 -31.21330 -30.39183 -29.83061 -29.18674 -27.62565 -26.45047 -24.79965 -23.80604 -22.17358 -21.25027 -20.97749 -20.30041 -19.20571 -18.68020 -17.89012 -17.08741 -16.66717 -16.22266 -15.88721 -15.48062 -15.38230 -14.93226 -14.58021 -14.30953 -13.97102 -13.73457 -13.66816 -13.63485 -13.29206 -13.10876 -12.78304 -12.72904 -12.61877 -12.41374 -12.27656 -12.13842 -12.03152 -11.65739 -11.60744 -11.58433 -11.44425 -11.23809 -11.08263 -10.93987 -10.72997 -10.64551 -10.35392 -10.23398 -10.12018 -9.53031 -9.38223 -8.75104 -8.47238 -8.05144 -7.96547 -6.42897 -3.83672 1.07638 2.76809 3.02286 3.15391 3.26067 3.33226 3.89935 3.96849 4.06024 4.15320 4.23947 4.45982 4.49718 4.56377 4.64279 4.84669 4.87786 4.98936 5.09116 5.11325 5.19584 5.22158 5.24491 5.25456 5.27422 5.35659 5.38695 5.42648 5.49952 5.55556 5.65170 5.66748 5.73667 5.75369 5.80367 5.85025 5.87391 6.00927 6.08435 6.11380 6.15346 6.17998 6.25499 6.29796 7.22058 7.30383 7.54326 7.65745 7.95215 8.05609 8.60170 9.17030 9.53521 10.04817 10.74890 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024435 B = 0.001839 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.642658 B =15218.182893 C =15989.108490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.095 3.905 3 H 0.080 0.920 4 N -0.661 5.661 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.583 6.583 8 N -0.565 5.565 9 C -0.299 4.299 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.929 3.071 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.282 1.282 17 C -0.085 4.085 18 H 0.086 0.914 19 C -0.116 4.116 20 C 0.093 3.907 21 N -0.612 5.612 22 C 0.580 3.420 23 O -0.546 6.546 24 C -0.188 4.188 25 C -0.077 4.077 26 C -0.107 4.107 27 C -0.125 4.125 28 C -0.098 4.098 29 C 0.111 3.889 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.350 0.650 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.137 0.863 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.069 0.931 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.017 -0.376 -25.948 26.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.016 4.016 3 H 0.098 0.902 4 N -0.293 5.293 5 C -0.081 4.081 6 C 0.227 3.773 7 O -0.468 6.468 8 N -0.201 5.201 9 C -0.428 4.428 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.756 3.244 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.208 1.208 17 C -0.105 4.105 18 H 0.104 0.896 19 C -0.154 4.154 20 C -0.030 4.030 21 N -0.345 5.345 22 C 0.371 3.629 23 O -0.426 6.426 24 C -0.191 4.191 25 C -0.097 4.097 26 C -0.144 4.144 27 C -0.163 4.163 28 C -0.135 4.135 29 C -0.012 4.012 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.170 0.830 34 H 0.103 0.897 35 H 0.061 0.939 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.155 0.845 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.099 0.901 48 H 0.102 0.898 49 H 0.087 0.913 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.299 -0.868 -26.276 26.391 hybrid contribution -0.833 0.456 1.155 1.495 sum 1.466 -0.412 -25.121 25.167 Atomic orbital electron populations 1.22588 0.97297 1.02457 1.02328 1.21479 0.92368 0.97718 0.90035 0.90222 1.60116 1.57661 1.09096 1.02388 1.21690 0.99883 0.95689 0.90873 1.19822 0.85110 0.88231 0.84183 1.90522 1.55297 1.16297 1.84635 1.41879 1.57800 1.12475 1.07971 1.19752 1.39847 0.96467 0.86755 0.87872 1.25263 0.97689 0.95778 0.99266 1.69620 1.48752 1.08869 1.27075 0.85804 0.78243 0.79631 0.80689 1.19220 1.20749 1.20789 1.22291 0.95544 1.00379 0.92291 0.89560 1.22607 0.96061 1.03985 0.92762 1.22536 0.86096 1.00613 0.93744 1.48336 1.13714 1.67422 1.05032 1.17658 0.87903 0.76734 0.80643 1.90789 1.23987 1.50800 1.76977 1.21775 0.95437 1.07134 0.94783 1.24040 0.98435 0.92790 0.94450 1.21481 0.93034 1.01131 0.98740 1.22492 0.99395 1.00441 0.93938 1.21665 0.91678 1.01275 0.98868 1.22300 0.92868 0.99538 0.86484 0.92035 0.92199 0.92312 0.82980 0.89695 0.93870 0.77486 0.91935 0.88903 0.90481 0.90881 0.91079 0.84547 0.90238 0.89673 0.90758 0.90466 0.90108 0.89848 0.91318 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 8.94 37.16 0.33 -1.59 16 2 C 0.09 1.06 2.12 -67.71 -0.14 0.91 16 3 H 0.08 0.86 7.74 -51.93 -0.40 0.46 16 4 N -0.66 -9.75 5.73 -107.99 -0.62 -10.37 16 5 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 6 C 0.44 10.13 7.82 -10.99 -0.09 10.04 16 7 O -0.58 -15.47 15.78 5.55 0.09 -15.38 16 8 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 9 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 10 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 11 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 12 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 13 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 C -0.09 -0.87 2.79 -88.47 -0.25 -1.12 16 18 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 19 C -0.12 -1.12 6.28 -24.90 -0.16 -1.28 16 20 C 0.09 0.79 5.23 -3.06 -0.02 0.77 16 21 N -0.61 -6.60 3.33 -171.92 -0.57 -7.17 16 22 C 0.58 7.21 7.81 -12.66 -0.10 7.12 16 23 O -0.55 -8.68 17.00 5.27 0.09 -8.59 16 24 C -0.19 -1.79 6.05 -102.73 -0.62 -2.41 16 25 C -0.08 -0.64 10.43 -36.01 -0.38 -1.01 16 26 C -0.11 -0.59 6.80 -26.85 -0.18 -0.77 16 27 C -0.13 -0.67 7.17 -24.99 -0.18 -0.85 16 28 C -0.10 -0.66 4.75 -26.77 -0.13 -0.79 16 29 C 0.11 1.16 5.30 -2.53 -0.01 1.15 16 30 H 0.06 0.56 7.23 -51.93 -0.38 0.19 16 31 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 32 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 33 H 0.35 5.50 8.17 -39.29 -0.32 5.18 16 34 H 0.08 1.31 8.05 -51.93 -0.42 0.89 16 35 H 0.04 0.66 7.44 -51.93 -0.39 0.27 16 36 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 37 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 0.75 7.99 -51.93 -0.42 0.34 16 40 H 0.07 0.56 6.19 -51.93 -0.32 0.24 16 41 H 0.07 0.52 6.62 -51.93 -0.34 0.18 16 42 H 0.14 1.15 8.04 -52.48 -0.42 0.72 16 43 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 44 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.08 0.50 7.33 -51.93 -0.38 0.12 16 48 H 0.08 0.54 5.43 -51.93 -0.28 0.26 16 49 H 0.07 0.69 8.04 -51.93 -0.42 0.28 16 50 H 0.08 0.89 7.88 -51.93 -0.41 0.48 16 LS Contribution 397.63 15.07 5.99 5.99 Total: -1.00 -32.89 397.63 -9.64 -42.53 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -8.07 Total: 11.80 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -2.19 Total: 3.08 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.52 Total: -55.30 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: 0.18 Total: -23.97 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.89 -9.64 -42.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672198800.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.011 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds