Wall clock time and date at job start Tue Mar 31 2020 19:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47120 * 2 1 4 4 N 1.46896 * 109.47164 * 120.00025 * 2 1 3 5 5 C 1.46908 * 111.00068 * 274.99827 * 4 2 1 6 6 C 1.50696 * 109.46991 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00345 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99718 * 180.02562 * 6 5 4 9 9 C 1.37099 * 120.00230 * 179.97438 * 8 6 5 10 10 H 1.08005 * 119.99824 * 0.02562 * 9 8 6 11 11 C 1.38948 * 120.00302 * 179.97438 * 9 8 6 12 12 N 1.31408 * 119.99782 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00020 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47125 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47073 * 120.00503 * 13 11 9 16 16 H 1.48506 * 109.46845 * 240.00090 * 13 11 9 17 17 C 1.53005 * 109.47111 * 240.00289 * 2 1 3 18 18 H 1.09005 * 110.88189 * 296.11563 * 17 2 1 19 19 C 1.55157 * 111.03534 * 172.21468 * 17 2 1 20 20 C 1.54320 * 102.93930 * 206.40417 * 19 17 2 21 21 N 1.47025 * 107.27222 * 22.19764 * 20 19 17 22 22 C 1.34776 * 125.65092 * 181.09877 * 21 20 19 23 23 O 1.21606 * 120.00112 * 174.49128 * 22 21 20 24 24 C 1.47110 * 119.99623 * 354.48316 * 22 21 20 25 25 C 1.32616 * 124.61705 * 185.51294 * 24 22 21 26 26 C 1.51113 * 110.75594 * 179.97438 * 25 24 22 27 27 C 1.54577 * 104.83973 * 16.59548 * 26 25 24 28 28 C 1.51106 * 124.62156 * 5.20521 * 24 22 21 29 29 C 1.47420 * 108.70359 * 1.05348 * 21 20 19 30 30 H 1.09002 * 109.47558 * 60.00025 * 1 2 3 31 31 H 1.09004 * 109.47120 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47025 * 299.99830 * 1 2 3 33 33 H 1.00896 * 111.00387 * 38.95626 * 4 2 1 34 34 H 1.08998 * 109.47107 * 300.00689 * 5 4 2 35 35 H 1.09000 * 109.46749 * 60.00204 * 5 4 2 36 36 H 0.97001 * 120.00185 * 359.97438 * 8 6 5 37 37 H 0.97005 * 120.00062 * 179.97438 * 12 11 9 38 38 H 1.08999 * 110.71759 * 88.04445 * 19 17 2 39 39 H 1.08998 * 110.72211 * 324.76764 * 19 17 2 40 40 H 1.08996 * 109.88963 * 262.77222 * 20 19 17 41 41 H 1.09001 * 109.88331 * 141.60873 * 20 19 17 42 42 H 1.08004 * 124.61867 * 0.02562 * 25 24 22 43 43 H 1.09008 * 110.36197 * 135.43557 * 26 25 24 44 44 H 1.08996 * 110.36579 * 257.64303 * 26 25 24 45 45 H 1.08997 * 110.98014 * 93.07528 * 27 26 25 46 46 H 1.09003 * 110.98093 * 216.83239 * 27 26 25 47 47 H 1.08996 * 110.36903 * 282.24456 * 28 24 22 48 48 H 1.09003 * 110.36585 * 44.56689 * 28 24 22 49 49 H 1.08998 * 110.36701 * 94.70924 * 29 21 20 50 50 H 1.08994 * 110.37011 * 216.92851 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5885 -0.5215 3.5557 7 8 2.8697 -1.6982 3.4697 8 7 2.7287 0.1206 4.7323 9 6 3.1886 -0.5564 5.8322 10 1 3.4389 -1.6042 5.7556 11 6 3.3336 0.1057 7.0452 12 7 3.0295 1.3807 7.1382 13 14 3.9609 -0.8167 8.5436 14 1 4.2292 -2.2307 8.1779 15 1 5.2143 -0.1830 9.0260 16 1 2.9371 -0.7695 9.6182 17 6 2.0400 -0.7212 -1.2493 18 1 1.7468 -1.7710 -1.2388 19 6 3.5784 -0.5747 -1.3879 20 6 3.8030 -0.7125 -2.9085 21 7 2.5326 -0.3795 -3.5694 22 6 2.3091 -0.4012 -4.8983 23 8 1.1896 -0.2034 -5.3300 24 6 3.4197 -0.6641 -5.8266 25 6 3.3271 -0.6041 -7.1482 26 6 4.6541 -0.9302 -7.7933 27 6 5.4783 -1.6150 -6.6792 28 6 4.8228 -1.0327 -5.4041 29 6 1.5433 -0.0189 -2.5376 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.4496 -1.4979 1.4100 34 1 2.7588 1.0463 2.1182 35 1 1.0871 0.6163 2.5525 36 1 2.5042 1.0618 4.8010 37 1 3.1303 1.8429 7.9851 38 1 4.0917 -1.3708 -0.8486 39 1 3.9058 0.4039 -1.0368 40 1 4.0892 -1.7362 -3.1498 41 1 4.5815 -0.0217 -3.2323 42 1 2.4263 -0.3552 -7.6895 43 1 4.5108 -1.6112 -8.6323 44 1 5.1483 -0.0176 -8.1266 45 1 5.3659 -2.6983 -6.7205 46 1 6.5289 -1.3309 -6.7403 47 1 5.3627 -0.1476 -5.0679 48 1 4.7963 -1.7844 -4.6152 49 1 1.5199 1.0616 -2.3956 50 1 0.5551 -0.3858 -2.8148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672198800.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:29 Heat of formation + Delta-G solvation = -76.896015 kcal Electronic energy + Delta-G solvation = -28502.681650 eV Core-core repulsion = 24528.726549 eV Total energy + Delta-G solvation = -3973.955101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.46607 -40.22358 -39.39769 -38.46432 -37.08652 -35.88684 -33.38143 -33.04109 -31.30791 -30.48401 -29.83020 -28.41572 -27.89364 -26.13469 -25.07786 -23.03216 -21.87736 -21.66963 -21.35503 -20.82521 -19.88029 -19.41446 -17.92209 -17.81445 -17.18214 -16.98399 -16.67908 -16.41550 -16.24921 -16.01135 -15.67660 -15.28287 -14.92044 -14.66590 -14.56662 -14.34693 -13.96951 -13.74275 -13.62432 -13.54324 -13.47619 -13.39045 -13.16986 -13.02742 -12.87708 -12.75700 -12.59267 -12.39282 -12.25653 -12.10941 -12.07094 -11.99846 -11.81998 -11.51694 -11.48973 -11.44443 -11.04976 -10.31589 -10.08912 -9.99497 -9.52254 -9.25769 -8.45462 -5.93822 0.34742 1.37493 1.42862 1.56822 1.94561 2.08090 2.18098 2.30191 2.89330 3.22252 3.33652 3.51393 3.62574 3.66842 3.74622 3.92618 4.09716 4.15098 4.24790 4.27685 4.30621 4.35263 4.38807 4.41355 4.48986 4.55334 4.60909 4.64078 4.76971 4.80453 4.82485 4.84473 4.94244 4.97570 5.01638 5.06085 5.13694 5.19107 5.24166 5.31252 5.37047 5.38032 5.42816 5.47904 5.55008 5.93339 6.15052 6.42769 6.46397 6.62047 7.04859 7.14671 7.58925 8.14161 8.72105 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024435 B = 0.001839 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.642658 B =15218.182893 C =15989.108490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.100 3.900 3 H 0.090 0.910 4 N -0.669 5.669 5 C 0.067 3.933 6 C 0.439 3.561 7 O -0.622 6.622 8 N -0.575 5.575 9 C -0.332 4.332 10 H 0.079 0.921 11 C -0.014 4.014 12 N -0.921 5.921 13 Si 0.992 3.008 14 H -0.273 1.273 15 H -0.271 1.271 16 H -0.272 1.272 17 C -0.078 4.078 18 H 0.078 0.922 19 C -0.113 4.113 20 C 0.096 3.904 21 N -0.612 5.612 22 C 0.570 3.430 23 O -0.594 6.594 24 C -0.212 4.212 25 C -0.072 4.072 26 C -0.103 4.103 27 C -0.122 4.122 28 C -0.094 4.094 29 C 0.113 3.887 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.344 0.656 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.396 0.604 37 H 0.277 0.723 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.127 0.873 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.084 0.916 49 H 0.076 0.924 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.313 0.131 -26.730 26.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.010 4.010 3 H 0.108 0.892 4 N -0.301 5.301 5 C -0.066 4.066 6 C 0.227 3.773 7 O -0.509 6.509 8 N -0.212 5.212 9 C -0.461 4.461 10 H 0.097 0.903 11 C -0.213 4.213 12 N -0.562 5.562 13 Si 0.816 3.184 14 H -0.198 1.198 15 H -0.196 1.196 16 H -0.197 1.197 17 C -0.097 4.097 18 H 0.096 0.904 19 C -0.151 4.151 20 C -0.026 4.026 21 N -0.344 5.344 22 C 0.363 3.637 23 O -0.477 6.477 24 C -0.215 4.215 25 C -0.092 4.092 26 C -0.140 4.140 27 C -0.159 4.159 28 C -0.131 4.131 29 C -0.010 4.010 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.162 0.838 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.230 0.770 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.145 0.855 43 H 0.111 0.889 44 H 0.118 0.882 45 H 0.094 0.906 46 H 0.113 0.887 47 H 0.107 0.893 48 H 0.103 0.897 49 H 0.094 0.906 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.610 -0.338 -27.055 27.297 hybrid contribution -1.276 0.293 1.319 1.858 sum 2.334 -0.044 -25.737 25.842 Atomic orbital electron populations 1.22535 0.96465 1.02476 1.02775 1.21509 0.93004 0.97870 0.88636 0.89192 1.60110 1.58356 1.08946 1.02649 1.21543 1.00962 0.95388 0.88670 1.20908 0.83277 0.87996 0.85133 1.90493 1.56565 1.18339 1.85465 1.41950 1.58421 1.12628 1.08240 1.19696 1.41947 0.95945 0.88543 0.90319 1.26023 0.97332 0.96613 1.01380 1.69677 1.48793 1.09684 1.28032 0.84883 0.78142 0.78067 0.77320 1.19788 1.19641 1.19734 1.22165 0.96101 0.99743 0.91734 0.90365 1.22572 0.95273 1.03793 0.93485 1.22641 0.85474 1.01797 0.92666 1.48429 1.14506 1.66627 1.04812 1.18212 0.88113 0.76060 0.81334 1.90750 1.25918 1.53259 1.77783 1.21865 0.96001 1.08885 0.94742 1.24335 0.99514 0.91012 0.94368 1.21543 0.91319 1.02087 0.99030 1.22520 1.00147 1.00463 0.92761 1.21680 0.90008 1.01698 0.99729 1.22263 0.92456 0.99861 0.86447 0.90803 0.92468 0.92576 0.83752 0.87694 0.91846 0.77013 0.91370 0.89732 0.90198 0.89823 0.89271 0.85519 0.88887 0.88226 0.90595 0.88700 0.89286 0.89725 0.90622 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.52 8.94 71.98 0.64 -2.88 16 2 C 0.10 2.08 2.12 44.92 0.10 2.17 16 3 H 0.09 1.73 7.74 -2.38 -0.02 1.71 16 4 N -0.67 -19.10 5.73 -495.57 -2.84 -21.93 16 5 C 0.07 2.14 5.97 85.55 0.51 2.65 16 6 C 0.44 20.24 7.82 87.66 0.69 20.93 16 7 O -0.62 -33.60 15.78 -3.06 -0.05 -33.65 16 8 N -0.57 -28.96 5.29 -306.99 -1.62 -30.59 16 9 C -0.33 -18.64 9.68 84.04 0.81 -17.83 16 10 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 11 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 12 N -0.92 -49.26 13.05 21.66 0.28 -48.98 16 13 Si 0.99 42.61 29.55 68.60 2.03 44.64 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 15 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 16 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 17 C -0.08 -1.51 2.79 -9.40 -0.03 -1.54 16 18 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 19 C -0.11 -2.03 6.28 31.78 0.20 -1.83 16 20 C 0.10 1.48 5.23 86.73 0.45 1.93 16 21 N -0.61 -12.82 3.33 -816.08 -2.71 -15.53 16 22 C 0.57 14.25 7.81 86.57 0.68 14.93 16 23 O -0.59 -19.54 17.00 -4.05 -0.07 -19.61 16 24 C -0.21 -3.86 6.05 -18.57 -0.11 -3.98 16 25 C -0.07 -1.13 10.43 24.66 0.26 -0.87 16 26 C -0.10 -0.89 6.80 30.52 0.21 -0.68 16 27 C -0.12 -0.96 7.17 31.72 0.23 -0.74 16 28 C -0.09 -1.08 4.75 30.57 0.15 -0.94 16 29 C 0.11 2.29 5.30 86.86 0.46 2.75 16 30 H 0.07 1.24 7.23 -2.39 -0.02 1.23 16 31 H 0.06 1.13 8.13 -2.38 -0.02 1.11 16 32 H 0.06 1.11 7.45 -2.39 -0.02 1.09 16 33 H 0.34 10.69 8.17 -89.70 -0.73 9.96 16 34 H 0.11 3.00 8.05 -2.39 -0.02 2.98 16 35 H 0.06 1.82 7.44 -2.39 -0.02 1.80 16 36 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 37 H 0.28 13.85 8.31 -92.70 -0.77 13.08 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 39 H 0.08 1.40 7.99 -2.39 -0.02 1.38 16 40 H 0.08 1.15 6.19 -2.39 -0.01 1.13 16 41 H 0.09 1.10 6.62 -2.39 -0.02 1.08 16 42 H 0.13 2.16 8.04 -2.91 -0.02 2.14 16 43 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 44 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.09 0.86 7.33 -2.39 -0.02 0.84 16 48 H 0.08 0.93 5.43 -2.39 -0.01 0.91 16 49 H 0.08 1.44 8.04 -2.39 -0.02 1.42 16 50 H 0.07 1.53 7.88 -2.39 -0.02 1.51 16 Total: -1.00 -72.36 397.63 0.22 -72.14 By element: Atomic # 1 Polarization: 40.21 SS G_CDS: -0.50 Total: 39.70 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 5.70 Total: 13.81 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -6.89 Total: -117.03 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -0.12 Total: -53.26 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -72.36 0.22 -72.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672198800.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.756 kcal (2) G-P(sol) polarization free energy of solvation -72.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds