Wall clock time and date at job start Tue Mar 31 2020 19:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47094 * 2 1 4 4 C 1.53000 * 109.47251 * 119.99678 * 2 1 3 5 5 C 1.50694 * 109.47138 * 294.99968 * 4 2 1 6 6 O 1.21278 * 120.00264 * 0.02562 * 5 4 2 7 7 N 1.34784 * 119.99997 * 179.97438 * 5 4 2 8 8 C 1.46922 * 120.62736 * 0.02842 * 7 5 4 9 9 C 1.53189 * 108.77647 * 126.36868 * 8 7 5 10 10 C 1.53109 * 109.32997 * 54.63033 * 9 8 7 11 11 C 1.53041 * 109.50376 * 298.65619 * 10 9 8 12 12 C 1.53003 * 109.49836 * 181.31660 * 11 10 9 13 13 O 1.42906 * 109.46869 * 65.06573 * 12 11 10 14 14 N 1.46496 * 109.49771 * 301.38306 * 11 10 9 15 15 C 1.36939 * 120.00077 * 299.93275 * 14 11 10 16 16 H 1.07997 * 119.99728 * 359.72656 * 15 14 11 17 17 C 1.38815 * 119.99845 * 180.02562 * 15 14 11 18 18 N 1.31619 * 119.99884 * 359.72042 * 17 15 14 19 19 Si 1.86798 * 119.99660 * 179.72678 * 17 15 14 20 20 H 1.48498 * 109.47416 * 59.99578 * 19 17 15 21 21 H 1.48508 * 109.46609 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46903 * 299.99163 * 19 17 15 23 23 C 1.46924 * 120.62998 * 179.97438 * 7 5 4 24 24 N 1.46506 * 109.47230 * 240.00140 * 2 1 3 25 25 C 1.36343 * 125.62802 * 299.68902 * 24 2 1 26 26 C 1.34860 * 108.21176 * 179.83344 * 25 24 2 27 27 C 1.40888 * 107.41462 * 0.42424 * 26 25 24 28 28 C 1.34843 * 107.42261 * 359.73682 * 27 26 25 29 29 H 1.09005 * 109.47139 * 300.00278 * 1 2 3 30 30 H 1.09005 * 109.47189 * 60.00244 * 1 2 3 31 31 H 1.08997 * 109.47450 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47314 * 174.99873 * 4 2 1 33 33 H 1.09002 * 109.46864 * 55.00146 * 4 2 1 34 34 H 1.09003 * 109.58561 * 246.15048 * 8 7 5 35 35 H 1.08996 * 109.59020 * 6.43209 * 8 7 5 36 36 H 1.08999 * 109.50196 * 174.58428 * 9 8 7 37 37 H 1.09000 * 109.49556 * 294.68367 * 9 8 7 38 38 H 1.09005 * 109.50513 * 178.63431 * 10 9 8 39 39 H 1.08996 * 109.45440 * 58.65619 * 10 9 8 40 40 H 1.08993 * 109.47112 * 185.06888 * 12 11 10 41 41 H 1.08999 * 109.47225 * 305.07146 * 12 11 10 42 42 H 0.96702 * 113.99405 * 180.02562 * 13 12 11 43 43 H 0.97004 * 120.00009 * 119.93892 * 14 11 10 44 44 H 0.97000 * 119.99517 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.58357 * 113.84259 * 23 7 5 46 46 H 1.09002 * 109.58890 * 353.42290 * 23 7 5 47 47 H 1.07996 * 125.89819 * 359.96653 * 25 24 2 48 48 H 1.08001 * 126.28771 * 180.16718 * 26 25 24 49 49 H 1.08000 * 126.28750 * 179.73424 * 27 26 25 50 50 H 1.08000 * 125.89826 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0572 2.4765 6 8 1.0109 1.0870 2.3633 7 7 1.9845 -0.3918 3.7002 8 6 2.7476 -1.6379 3.8535 9 6 3.9916 -1.3531 4.7009 10 6 3.5673 -0.7090 6.0235 11 6 2.8599 0.6185 5.7416 12 6 2.4650 1.2778 7.0646 13 8 3.6438 1.6267 7.7934 14 7 3.7617 1.5058 5.0031 15 6 4.9574 1.8807 5.5553 16 1 5.2337 1.5256 6.5371 17 6 5.8116 2.7219 4.8556 18 7 5.4747 3.1549 3.6592 19 14 7.4393 3.2394 5.6121 20 1 8.2644 2.0348 5.8830 21 1 8.1614 4.1319 4.6700 22 1 7.1862 3.9625 6.8842 23 6 1.6036 0.3563 4.9060 24 7 2.0183 -0.6906 -1.1962 25 6 1.7656 -1.9902 -1.5218 26 6 2.3800 -2.2587 -2.6919 27 6 3.0440 -1.0846 -3.0986 28 6 2.8054 -0.1417 -2.1647 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1263 -0.7994 1.2056 33 1 1.6053 -1.7197 1.2952 34 1 2.1300 -2.3857 4.3509 35 1 3.0476 -2.0057 2.8723 36 1 4.5158 -2.2872 4.9030 37 1 4.6518 -0.6742 4.1612 38 1 4.4484 -0.5274 6.6391 39 1 2.8875 -1.3779 6.5514 40 1 1.8830 2.1770 6.8630 41 1 1.8668 0.5821 7.6530 42 1 3.4687 2.0498 8.6451 43 1 3.5117 1.8280 4.1229 44 1 6.0718 3.7424 3.1702 45 1 0.8924 -0.2285 5.4894 46 1 1.1509 1.3056 4.6194 47 1 1.1736 -2.6843 -0.9437 48 1 2.3687 -3.2018 -3.2181 49 1 3.6356 -0.9623 -3.9939 50 1 3.1739 0.8734 -2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673702892.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:24 Heat of formation + Delta-G solvation = -32.786288 kcal Electronic energy + Delta-G solvation = -30809.868614 eV Core-core repulsion = 26837.826254 eV Total energy + Delta-G solvation = -3972.042360 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.19760 -41.31133 -39.45047 -37.19339 -35.97783 -35.54450 -33.79913 -32.69656 -31.06669 -30.40075 -29.59808 -29.07951 -26.70458 -26.21084 -25.50583 -23.62632 -23.07077 -21.40082 -20.84720 -20.18810 -19.56653 -19.18297 -18.73786 -17.90579 -17.43032 -16.93919 -16.68014 -16.45861 -15.80055 -15.62844 -15.53515 -15.24208 -15.05209 -14.78682 -14.71766 -14.46081 -14.27913 -13.87918 -13.72782 -13.55003 -13.46992 -13.25994 -13.11394 -12.91601 -12.87396 -12.77503 -12.68648 -12.63486 -12.35421 -12.13002 -12.02690 -11.76372 -11.71109 -11.50333 -11.26705 -10.86292 -10.67544 -10.54065 -9.53135 -9.49639 -9.01462 -8.86690 -7.78498 -5.02625 1.40972 1.45584 1.47806 1.53540 1.59626 1.81750 2.20698 2.27310 2.64654 3.41659 3.46085 3.55244 3.69337 3.77206 3.85319 4.00170 4.11658 4.15149 4.21163 4.26764 4.41524 4.42202 4.42976 4.47929 4.51495 4.57806 4.63893 4.66315 4.69225 4.77865 4.81764 4.86175 4.91081 4.95187 5.00681 5.04474 5.20489 5.31937 5.44482 5.48763 5.55738 5.59281 5.69526 5.92809 6.15849 6.38911 6.42740 6.46119 6.54763 7.14243 7.18358 7.50837 8.22565 8.45272 9.45709 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.003652 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.088379 B = 7664.419096 C = 8826.458156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.151 3.849 3 H 0.078 0.922 4 C -0.135 4.135 5 C 0.517 3.483 6 O -0.577 6.577 7 N -0.597 5.597 8 C 0.111 3.889 9 C -0.127 4.127 10 C -0.110 4.110 11 C 0.175 3.825 12 C 0.074 3.926 13 O -0.565 6.565 14 N -0.714 5.714 15 C -0.174 4.174 16 H 0.094 0.906 17 C -0.096 4.096 18 N -0.983 5.983 19 Si 0.958 3.042 20 H -0.283 1.283 21 H -0.308 1.308 22 H -0.285 1.285 23 C 0.120 3.880 24 N -0.443 5.443 25 C -0.014 4.014 26 C -0.220 4.220 27 C -0.216 4.216 28 C -0.038 4.038 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.133 0.867 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.035 0.965 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.023 0.977 41 H 0.069 0.931 42 H 0.373 0.627 43 H 0.364 0.636 44 H 0.238 0.762 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.185 0.815 48 H 0.150 0.850 49 H 0.142 0.858 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.044 -16.190 -2.146 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.049 3.951 3 H 0.096 0.904 4 C -0.175 4.175 5 C 0.306 3.694 6 O -0.457 6.457 7 N -0.328 5.328 8 C -0.011 4.011 9 C -0.165 4.165 10 C -0.149 4.149 11 C 0.084 3.916 12 C -0.007 4.007 13 O -0.371 6.371 14 N -0.352 5.352 15 C -0.306 4.306 16 H 0.112 0.888 17 C -0.286 4.286 18 N -0.638 5.638 19 Si 0.790 3.210 20 H -0.210 1.210 21 H -0.235 1.235 22 H -0.212 1.212 23 C -0.003 4.003 24 N -0.119 5.119 25 C -0.144 4.144 26 C -0.244 4.244 27 C -0.241 4.241 28 C -0.168 4.168 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.151 0.849 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.042 0.958 41 H 0.087 0.913 42 H 0.221 0.779 43 H 0.195 0.805 44 H 0.047 0.953 45 H 0.125 0.875 46 H 0.083 0.917 47 H 0.202 0.798 48 H 0.167 0.833 49 H 0.159 0.841 50 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.074 -15.739 -2.279 19.967 hybrid contribution 1.180 1.696 0.366 2.099 sum -10.894 -14.042 -1.913 17.875 Atomic orbital electron populations 1.22149 0.91873 1.03626 1.03398 1.20984 0.96503 0.95705 0.81948 0.90381 1.21914 1.03473 1.01441 0.90693 1.20643 0.78688 0.84966 0.85103 1.90664 1.42620 1.25868 1.86591 1.47960 1.54500 1.25237 1.05108 1.21994 0.92414 0.84723 1.01933 1.21758 0.97603 1.00531 0.96633 1.21783 1.00356 0.95828 0.96968 1.20401 0.90127 0.90927 0.90188 1.22656 0.87012 0.97556 0.93435 1.86801 1.31921 1.82579 1.35751 1.42547 1.18595 1.55351 1.18732 1.19772 0.93279 1.18539 0.99011 0.88809 1.25379 1.02158 1.03329 0.97701 1.69844 1.38395 1.41199 1.14340 0.85406 0.81363 0.77439 0.76784 1.21022 1.23538 1.21201 1.21632 0.95561 0.97306 0.85787 1.44400 1.39106 1.10580 1.17790 1.22205 1.06598 0.85876 0.99692 1.21169 1.05057 0.99721 0.98457 1.21137 1.07051 0.94347 1.01540 1.22125 1.01910 1.00514 0.92271 0.90290 0.92352 0.90227 0.88864 0.84929 0.87768 0.88680 0.89513 0.94621 0.93784 0.89946 0.95829 0.91331 0.77905 0.80496 0.95273 0.87500 0.91665 0.79759 0.83260 0.84063 0.82465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.98 71.98 0.65 -2.77 16 2 C 0.15 3.83 2.67 44.99 0.12 3.95 16 3 H 0.08 2.45 7.88 -2.39 -0.02 2.43 16 4 C -0.14 -3.19 3.50 29.85 0.10 -3.09 16 5 C 0.52 15.90 7.42 87.65 0.65 16.55 16 6 O -0.58 -22.08 13.38 -3.02 -0.04 -22.12 16 7 N -0.60 -16.74 2.87 -819.01 -2.35 -19.09 16 8 C 0.11 2.38 6.34 86.36 0.55 2.93 16 9 C -0.13 -3.63 5.93 30.69 0.18 -3.45 16 10 C -0.11 -3.36 4.43 30.64 0.14 -3.22 16 11 C 0.17 6.13 0.68 3.67 0.00 6.13 16 12 C 0.07 2.35 6.09 71.98 0.44 2.79 16 13 O -0.56 -20.12 9.91 -148.98 -1.48 -21.59 16 14 N -0.71 -34.62 4.22 -303.06 -1.28 -35.89 16 15 C -0.17 -9.46 8.14 84.03 0.68 -8.77 16 16 H 0.09 5.04 5.29 -2.91 -0.02 5.02 16 17 C -0.10 -5.68 5.50 84.86 0.47 -5.22 16 18 N -0.98 -62.88 13.06 21.65 0.28 -62.59 16 19 Si 0.96 48.70 29.55 68.60 2.03 50.73 16 20 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 21 H -0.31 -16.13 7.11 99.48 0.71 -15.42 16 22 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 23 C 0.12 3.61 5.14 86.35 0.44 4.06 16 24 N -0.44 -10.82 2.62 -502.00 -1.31 -12.14 16 25 C -0.01 -0.29 10.45 83.22 0.87 0.58 16 26 C -0.22 -4.82 10.86 22.14 0.24 -4.58 16 27 C -0.22 -5.30 10.86 22.14 0.24 -5.06 16 28 C -0.04 -1.02 11.39 83.21 0.95 -0.07 16 29 H 0.08 2.08 5.95 -2.38 -0.01 2.07 16 30 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.08 1.37 7.92 -2.39 -0.02 1.35 16 32 H 0.09 2.44 7.69 -2.39 -0.02 2.42 16 33 H 0.13 2.10 7.85 -2.39 -0.02 2.08 16 34 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.09 1.73 5.93 -2.39 -0.01 1.72 16 36 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.03 1.41 7.53 -2.39 -0.02 1.39 16 38 H 0.04 1.62 6.98 -2.38 -0.02 1.60 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.37 9.57 9.12 -74.06 -0.68 8.89 16 43 H 0.36 20.28 7.65 -92.71 -0.71 19.58 16 44 H 0.24 15.18 8.31 -92.71 -0.77 14.41 16 45 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.06 2.37 7.01 -2.39 -0.02 2.35 16 47 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16 48 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 49 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 50 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -77.35 389.64 2.14 -75.21 By element: Atomic # 1 Polarization: 47.15 SS G_CDS: -0.43 Total: 46.72 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 6.72 Total: 0.76 kcal Atomic # 7 Polarization: -125.06 SS G_CDS: -4.66 Total: -129.71 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -1.52 Total: -43.71 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.03 Total: 50.73 kcal Total: -77.35 2.14 -75.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673702892.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.428 kcal (2) G-P(sol) polarization free energy of solvation -77.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds