Wall clock time and date at job start Tue Mar 31 2020 19:24:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08999 * 109.47636 * 2 1
4 4 C 1.53005 * 109.46650 * 239.99917 * 2 1 3
5 5 C 1.50699 * 109.46993 * 65.00744 * 4 2 1
6 6 O 1.21280 * 120.00227 * 359.97438 * 5 4 2
7 7 N 1.34777 * 120.00219 * 179.97438 * 5 4 2
8 8 C 1.46932 * 120.62586 * 359.97438 * 7 5 4
9 9 C 1.53194 * 108.77197 * 233.62510 * 8 7 5
10 10 C 1.53103 * 109.33643 * 305.36933 * 9 8 7
11 11 C 1.53042 * 109.50469 * 61.33744 * 10 9 8
12 12 C 1.52999 * 109.49905 * 178.68843 * 11 10 9
13 13 O 1.42908 * 109.46749 * 299.93591 * 12 11 10
14 14 N 1.46506 * 109.49433 * 58.62143 * 11 10 9
15 15 C 1.36938 * 119.99589 * 60.06738 * 14 11 10
16 16 H 1.07999 * 120.00325 * 359.97438 * 15 14 11
17 17 C 1.38815 * 119.99817 * 180.02562 * 15 14 11
18 18 N 1.31621 * 119.99673 * 359.71804 * 17 15 14
19 19 Si 1.86795 * 120.00115 * 179.97438 * 17 15 14
20 20 H 1.48494 * 109.47071 * 359.97438 * 19 17 15
21 21 H 1.48506 * 109.47211 * 119.99797 * 19 17 15
22 22 H 1.48493 * 109.47327 * 239.99664 * 19 17 15
23 23 C 1.46928 * 120.63516 * 179.97438 * 7 5 4
24 24 N 1.46498 * 109.47102 * 120.00618 * 2 1 3
25 25 C 1.36340 * 125.64023 * 59.68917 * 24 2 1
26 26 C 1.34851 * 108.22109 * 179.83324 * 25 24 2
27 27 C 1.40892 * 107.41393 * 0.42386 * 26 25 24
28 28 C 1.34848 * 107.41840 * 359.73583 * 27 26 25
29 29 H 1.08999 * 109.47636 * 179.97438 * 1 2 3
30 30 H 1.08999 * 109.46916 * 300.00289 * 1 2 3
31 31 H 1.09000 * 109.46710 * 59.99542 * 1 2 3
32 32 H 1.08994 * 109.47245 * 305.00338 * 4 2 1
33 33 H 1.09007 * 109.46979 * 185.00125 * 4 2 1
34 34 H 1.08992 * 109.58580 * 353.41696 * 8 7 5
35 35 H 1.09004 * 109.58329 * 113.84435 * 8 7 5
36 36 H 1.09005 * 109.49336 * 65.32205 * 9 8 7
37 37 H 1.09002 * 109.49679 * 185.37768 * 9 8 7
38 38 H 1.09004 * 109.44467 * 301.34847 * 10 9 8
39 39 H 1.08990 * 109.50906 * 181.36848 * 10 9 8
40 40 H 1.08991 * 109.46846 * 59.93708 * 12 11 10
41 41 H 1.09001 * 109.47011 * 179.97438 * 12 11 10
42 42 H 0.96699 * 113.99169 * 180.02562 * 13 12 11
43 43 H 0.96999 * 120.00080 * 240.06228 * 14 11 10
44 44 H 0.97000 * 120.00043 * 180.02562 * 18 17 15
45 45 H 1.09003 * 109.58344 * 6.58161 * 23 7 5
46 46 H 1.08993 * 109.70445 * 246.22743 * 23 7 5
47 47 H 1.08009 * 125.88789 * 359.95701 * 25 24 2
48 48 H 1.07997 * 126.28820 * 180.15799 * 26 25 24
49 49 H 1.07997 * 126.28535 * 179.73435 * 27 26 25
50 50 H 1.07997 * 125.88894 * 180.02562 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0399 -0.7213 -1.2493
5 6 1.6413 0.0571 -2.4766
6 8 1.0111 1.0871 -2.3633
7 7 1.9852 -0.3913 -3.7002
8 6 2.7491 -1.6370 -3.8535
9 6 3.9932 -1.3513 -4.7005
10 6 3.5691 -0.7072 -6.0231
11 6 2.8607 0.6198 -5.7412
12 6 2.4660 1.2791 -7.0642
13 8 3.6388 1.5231 -7.8433
14 7 3.7617 1.5076 -5.0020
15 6 4.9574 1.8832 -5.5537
16 1 5.2364 1.5247 -6.5335
17 6 5.8114 2.7240 -4.8532
18 7 5.4693 3.1646 -3.6610
19 14 7.4427 3.2359 -5.6054
20 1 7.5867 2.6134 -6.9459
21 1 7.4842 4.7144 -5.7387
22 1 8.5544 2.7866 -4.7295
23 6 1.6034 0.3562 -4.9061
24 7 2.0183 -0.6907 1.1961
25 6 1.7559 -1.9869 1.5278
26 6 2.3799 -2.2589 2.6919
27 6 3.0441 -1.0848 3.0986
28 6 2.8055 -0.1419 2.1646
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 1.6052 -1.7198 -1.2952
33 1 3.1263 -0.7996 -1.2057
34 1 3.0511 -2.0035 -2.8724
35 1 2.1321 -2.3851 -4.3513
36 1 4.6529 -0.6722 -4.1603
37 1 4.5184 -2.2850 -4.9020
38 1 2.8899 -1.3764 -6.5512
39 1 4.4502 -0.5250 -6.6382
40 1 1.7957 0.6182 -7.6136
41 1 1.9611 2.2239 -6.8628
42 1 3.4635 1.9410 -8.6975
43 1 3.5113 1.8294 -4.1219
44 1 6.0658 3.7524 -3.1716
45 1 1.1495 1.3049 -4.6195
46 1 0.8921 -0.2274 -5.4904
47 1 1.1539 -2.6774 0.9556
48 1 2.3686 -3.2019 3.2180
49 1 3.6356 -0.9626 3.9939
50 1 3.1747 0.8729 2.1807
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001673702894.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:24:31
Heat of formation + Delta-G solvation = -11.560586 kcal
Electronic energy + Delta-G solvation = -30800.720706 eV
Core-core repulsion = 26829.598761 eV
Total energy + Delta-G solvation = -3971.121944 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-41.22952 -40.09928 -38.08999 -35.87731 -34.93044 -33.89740 -32.09255 -31.38705
-29.87575 -28.88206 -28.64114 -27.95279 -25.47191 -24.95200 -23.54302 -22.59539
-21.81957 -20.43664 -19.74511 -18.99124 -18.28816 -17.70257 -17.34028 -16.37005
-16.33248 -15.71904 -15.47444 -14.90760 -14.60318 -14.24287 -14.11795 -13.87266
-13.70166 -13.63311 -13.44145 -13.15512 -13.04007 -12.77641 -12.57031 -12.39838
-12.21153 -12.01251 -11.99296 -11.90584 -11.72931 -11.44272 -11.22665 -11.08752
-10.82167 -10.74443 -10.42916 -10.37775 -10.12372 -9.89804 -9.60075 -9.53841
-9.00577 -8.78815 -8.55242 -8.31859 -8.07947 -6.88393 -5.63136 -2.90601
2.36089 2.78130 2.85746 3.13622 3.33337 3.49264 3.56033 3.58310
4.46447 4.61671 4.69397 4.77603 4.85535 5.03908 5.07593 5.16289
5.29751 5.31247 5.33155 5.38576 5.45995 5.49669 5.59254 5.62228
5.67885 5.70735 5.73893 5.80565 5.83649 5.88557 5.89955 6.01320
6.06916 6.09549 6.15875 6.31692 6.34828 6.40466 6.48289 6.70878
6.78198 6.94882 7.05630 7.07615 7.33697 7.47076 7.61257 8.07455
8.31528 8.36767 8.54820 9.67027 10.18212 10.54563 11.59719
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.012429 B = 0.003652 C = 0.003169
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2252.297162 B = 7664.528325 C = 8833.970156
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.148 3.852
3 H 0.110 0.890
4 C -0.148 4.148
5 C 0.526 3.474
6 O -0.539 6.539
7 N -0.595 5.595
8 C 0.109 3.891
9 C -0.130 4.130
10 C -0.116 4.116
11 C 0.189 3.811
12 C 0.075 3.925
13 O -0.539 6.539
14 N -0.705 5.705
15 C -0.208 4.208
16 H 0.093 0.907
17 C -0.024 4.024
18 N -0.940 5.940
19 Si 0.901 3.099
20 H -0.281 1.281
21 H -0.296 1.296
22 H -0.297 1.297
23 C 0.116 3.884
24 N -0.440 5.440
25 C -0.017 4.017
26 C -0.206 4.206
27 C -0.208 4.208
28 C -0.009 4.009
29 H 0.055 0.945
30 H 0.060 0.940
31 H 0.095 0.905
32 H 0.095 0.905
33 H 0.103 0.897
34 H 0.077 0.923
35 H 0.063 0.937
36 H 0.089 0.911
37 H 0.060 0.940
38 H 0.041 0.959
39 H 0.075 0.925
40 H 0.024 0.976
41 H 0.038 0.962
42 H 0.354 0.646
43 H 0.383 0.617
44 H 0.250 0.750
45 H 0.094 0.906
46 H 0.065 0.935
47 H 0.155 0.845
48 H 0.130 0.870
49 H 0.131 0.869
50 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.546 -12.510 3.450 16.722
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.045 3.955
3 H 0.128 0.872
4 C -0.188 4.188
5 C 0.313 3.687
6 O -0.417 6.417
7 N -0.327 5.327
8 C -0.013 4.013
9 C -0.168 4.168
10 C -0.156 4.156
11 C 0.095 3.905
12 C -0.007 4.007
13 O -0.341 6.341
14 N -0.345 5.345
15 C -0.339 4.339
16 H 0.110 0.890
17 C -0.218 4.218
18 N -0.590 5.590
19 Si 0.734 3.266
20 H -0.206 1.206
21 H -0.224 1.224
22 H -0.225 1.225
23 C -0.007 4.007
24 N -0.115 5.115
25 C -0.147 4.147
26 C -0.231 4.231
27 C -0.233 4.233
28 C -0.139 4.139
29 H 0.074 0.926
30 H 0.079 0.921
31 H 0.114 0.886
32 H 0.113 0.887
33 H 0.121 0.879
34 H 0.095 0.905
35 H 0.081 0.919
36 H 0.107 0.893
37 H 0.078 0.922
38 H 0.059 0.941
39 H 0.094 0.906
40 H 0.042 0.958
41 H 0.056 0.944
42 H 0.198 0.802
43 H 0.218 0.782
44 H 0.060 0.940
45 H 0.112 0.888
46 H 0.083 0.917
47 H 0.172 0.828
48 H 0.148 0.852
49 H 0.149 0.851
50 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -10.567 -12.023 3.631 16.413
hybrid contribution 0.781 0.648 -0.635 1.197
sum -9.785 -11.375 2.996 15.301
Atomic orbital electron populations
1.22267 0.92990 1.02440 1.04399 1.21139 0.95767 0.97065 0.81508
0.87239 1.21983 1.04087 1.00243 0.92500 1.20098 0.79236 0.85265
0.84101 1.90675 1.40815 1.24193 1.86011 1.47818 1.54584 1.24686
1.05586 1.21794 0.93438 0.85210 1.00907 1.21829 0.96801 1.00744
0.97410 1.21862 1.01124 0.96198 0.96414 1.19950 0.89855 0.91046
0.89600 1.22715 0.87081 0.97840 0.93025 1.86842 1.31544 1.83513
1.32244 1.42415 1.18528 1.54396 1.19183 1.19604 0.92972 1.21320
1.00028 0.88980 1.24740 0.98896 1.01253 0.96901 1.69694 1.37239
1.39056 1.13017 0.86174 0.84423 0.77871 0.78143 1.20615 1.22389
1.22453 1.21704 0.96279 0.97445 0.85314 1.44384 1.38871 1.10234
1.18025 1.21678 1.06838 0.86436 0.99728 1.20837 1.04885 0.99201
0.98159 1.20850 1.07129 0.93966 1.01328 1.21924 1.00822 0.99938
0.91233 0.92623 0.92099 0.88605 0.88682 0.87865 0.90465 0.91918
0.89286 0.92150 0.94067 0.90603 0.95841 0.94386 0.80177 0.78239
0.94039 0.88786 0.91668 0.82780 0.85178 0.85069 0.82298
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.90 8.97 37.16 0.33 -1.57 16
2 C 0.15 1.88 2.67 -67.93 -0.18 1.70 16
3 H 0.11 1.59 7.88 -51.93 -0.41 1.19 16
4 C -0.15 -1.85 3.52 -27.88 -0.10 -1.95 16
5 C 0.53 8.23 7.42 -10.99 -0.08 8.15 16
6 O -0.54 -10.02 13.38 5.56 0.07 -9.95 16
7 N -0.59 -8.94 2.87 -172.75 -0.50 -9.44 16
8 C 0.11 1.39 6.34 -3.71 -0.02 1.36 16
9 C -0.13 -2.01 5.93 -26.58 -0.16 -2.17 16
10 C -0.12 -1.94 4.39 -26.66 -0.12 -2.06 16
11 C 0.19 3.46 0.68 -131.68 -0.09 3.37 16
12 C 0.07 1.27 6.08 37.16 0.23 1.49 16
13 O -0.54 -9.88 9.97 -35.23 -0.35 -10.23 16
14 N -0.70 -16.74 4.22 -47.10 -0.20 -16.94 16
15 C -0.21 -5.56 8.29 -15.06 -0.12 -5.68 16
16 H 0.09 2.48 5.31 -52.49 -0.28 2.20 16
17 C -0.02 -0.68 5.50 -17.43 -0.10 -0.77 16
18 N -0.94 -28.61 13.06 55.49 0.72 -27.88 16
19 Si 0.90 22.90 29.55 -169.99 -5.02 17.88 16
20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16
21 H -0.30 -7.67 7.11 56.52 0.40 -7.26 16
22 H -0.30 -7.63 7.11 56.52 0.40 -7.22 16
23 C 0.12 1.85 5.15 -3.69 -0.02 1.83 16
24 N -0.44 -5.54 2.62 -110.02 -0.29 -5.83 16
25 C -0.02 -0.20 10.45 -16.75 -0.18 -0.37 16
26 C -0.21 -2.47 10.86 -39.78 -0.43 -2.90 16
27 C -0.21 -2.62 10.86 -39.78 -0.43 -3.05 16
28 C -0.01 -0.12 11.39 -16.75 -0.19 -0.31 16
29 H 0.05 0.56 7.91 -51.93 -0.41 0.15 16
30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
31 H 0.10 1.27 5.95 -51.93 -0.31 0.96 16
32 H 0.09 0.95 7.86 -51.93 -0.41 0.54 16
33 H 0.10 1.39 7.69 -51.92 -0.40 0.99 16
34 H 0.08 0.86 5.93 -51.93 -0.31 0.55 16
35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
36 H 0.09 1.77 7.53 -51.93 -0.39 1.38 16
37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
38 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16
39 H 0.08 1.48 6.83 -51.93 -0.35 1.12 16
40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16
41 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16
42 H 0.35 4.77 9.12 45.56 0.42 5.18 16
43 H 0.38 10.22 7.65 -40.82 -0.31 9.90 16
44 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16
45 H 0.09 1.70 7.01 -51.93 -0.36 1.34 16
46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
47 H 0.15 1.41 8.06 -52.48 -0.42 0.99 16
48 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16
49 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16
50 H 0.16 1.86 8.06 -52.49 -0.42 1.43 16
LS Contribution 389.66 15.07 5.87 5.87
Total: -1.00 -33.22 389.66 -8.66 -41.88
By element:
Atomic # 1 Polarization: 24.88 SS G_CDS: -7.32 Total: 17.57 kcal
Atomic # 6 Polarization: -1.27 SS G_CDS: -1.66 Total: -2.93 kcal
Atomic # 7 Polarization: -59.83 SS G_CDS: -0.26 Total: -60.09 kcal
Atomic # 8 Polarization: -19.91 SS G_CDS: -0.28 Total: -20.18 kcal
Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -33.22 -8.66 -41.88 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001673702894.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.323 kcal
(2) G-P(sol) polarization free energy of solvation -33.224 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.901 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.883 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.561 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds