Wall clock time and date at job start Tue Mar 31 2020 19:24:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08999 * 109.47636 * 2 1
4 4 C 1.53005 * 109.46650 * 239.99917 * 2 1 3
5 5 C 1.50699 * 109.46993 * 65.00744 * 4 2 1
6 6 O 1.21280 * 120.00227 * 359.97438 * 5 4 2
7 7 N 1.34777 * 120.00219 * 179.97438 * 5 4 2
8 8 C 1.46932 * 120.62586 * 359.97438 * 7 5 4
9 9 C 1.53194 * 108.77197 * 233.62510 * 8 7 5
10 10 C 1.53103 * 109.33643 * 305.36933 * 9 8 7
11 11 C 1.53042 * 109.50469 * 61.33744 * 10 9 8
12 12 C 1.52999 * 109.49905 * 178.68843 * 11 10 9
13 13 O 1.42908 * 109.46749 * 299.93591 * 12 11 10
14 14 N 1.46506 * 109.49433 * 58.62143 * 11 10 9
15 15 C 1.36938 * 119.99589 * 60.06738 * 14 11 10
16 16 H 1.07999 * 120.00325 * 359.97438 * 15 14 11
17 17 C 1.38815 * 119.99817 * 180.02562 * 15 14 11
18 18 N 1.31621 * 119.99673 * 359.71804 * 17 15 14
19 19 Si 1.86795 * 120.00115 * 179.97438 * 17 15 14
20 20 H 1.48494 * 109.47071 * 359.97438 * 19 17 15
21 21 H 1.48506 * 109.47211 * 119.99797 * 19 17 15
22 22 H 1.48493 * 109.47327 * 239.99664 * 19 17 15
23 23 C 1.46928 * 120.63516 * 179.97438 * 7 5 4
24 24 N 1.46498 * 109.47102 * 120.00618 * 2 1 3
25 25 C 1.36340 * 125.64023 * 59.68917 * 24 2 1
26 26 C 1.34851 * 108.22109 * 179.83324 * 25 24 2
27 27 C 1.40892 * 107.41393 * 0.42386 * 26 25 24
28 28 C 1.34848 * 107.41840 * 359.73583 * 27 26 25
29 29 H 1.08999 * 109.47636 * 179.97438 * 1 2 3
30 30 H 1.08999 * 109.46916 * 300.00289 * 1 2 3
31 31 H 1.09000 * 109.46710 * 59.99542 * 1 2 3
32 32 H 1.08994 * 109.47245 * 305.00338 * 4 2 1
33 33 H 1.09007 * 109.46979 * 185.00125 * 4 2 1
34 34 H 1.08992 * 109.58580 * 353.41696 * 8 7 5
35 35 H 1.09004 * 109.58329 * 113.84435 * 8 7 5
36 36 H 1.09005 * 109.49336 * 65.32205 * 9 8 7
37 37 H 1.09002 * 109.49679 * 185.37768 * 9 8 7
38 38 H 1.09004 * 109.44467 * 301.34847 * 10 9 8
39 39 H 1.08990 * 109.50906 * 181.36848 * 10 9 8
40 40 H 1.08991 * 109.46846 * 59.93708 * 12 11 10
41 41 H 1.09001 * 109.47011 * 179.97438 * 12 11 10
42 42 H 0.96699 * 113.99169 * 180.02562 * 13 12 11
43 43 H 0.96999 * 120.00080 * 240.06228 * 14 11 10
44 44 H 0.97000 * 120.00043 * 180.02562 * 18 17 15
45 45 H 1.09003 * 109.58344 * 6.58161 * 23 7 5
46 46 H 1.08993 * 109.70445 * 246.22743 * 23 7 5
47 47 H 1.08009 * 125.88789 * 359.95701 * 25 24 2
48 48 H 1.07997 * 126.28820 * 180.15799 * 26 25 24
49 49 H 1.07997 * 126.28535 * 179.73435 * 27 26 25
50 50 H 1.07997 * 125.88894 * 180.02562 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0399 -0.7213 -1.2493
5 6 1.6413 0.0571 -2.4766
6 8 1.0111 1.0871 -2.3633
7 7 1.9852 -0.3913 -3.7002
8 6 2.7491 -1.6370 -3.8535
9 6 3.9932 -1.3513 -4.7005
10 6 3.5691 -0.7072 -6.0231
11 6 2.8607 0.6198 -5.7412
12 6 2.4660 1.2791 -7.0642
13 8 3.6388 1.5231 -7.8433
14 7 3.7617 1.5076 -5.0020
15 6 4.9574 1.8832 -5.5537
16 1 5.2364 1.5247 -6.5335
17 6 5.8114 2.7240 -4.8532
18 7 5.4693 3.1646 -3.6610
19 14 7.4427 3.2359 -5.6054
20 1 7.5867 2.6134 -6.9459
21 1 7.4842 4.7144 -5.7387
22 1 8.5544 2.7866 -4.7295
23 6 1.6034 0.3562 -4.9061
24 7 2.0183 -0.6907 1.1961
25 6 1.7559 -1.9869 1.5278
26 6 2.3799 -2.2589 2.6919
27 6 3.0441 -1.0848 3.0986
28 6 2.8055 -0.1419 2.1646
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 1.6052 -1.7198 -1.2952
33 1 3.1263 -0.7996 -1.2057
34 1 3.0511 -2.0035 -2.8724
35 1 2.1321 -2.3851 -4.3513
36 1 4.6529 -0.6722 -4.1603
37 1 4.5184 -2.2850 -4.9020
38 1 2.8899 -1.3764 -6.5512
39 1 4.4502 -0.5250 -6.6382
40 1 1.7957 0.6182 -7.6136
41 1 1.9611 2.2239 -6.8628
42 1 3.4635 1.9410 -8.6975
43 1 3.5113 1.8294 -4.1219
44 1 6.0658 3.7524 -3.1716
45 1 1.1495 1.3049 -4.6195
46 1 0.8921 -0.2274 -5.4904
47 1 1.1539 -2.6774 0.9556
48 1 2.3686 -3.2019 3.2180
49 1 3.6356 -0.9626 3.9939
50 1 3.1747 0.8729 2.1807
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001673702894.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:24:30
Heat of formation + Delta-G solvation = -34.018603 kcal
Electronic energy + Delta-G solvation = -30801.694558 eV
Core-core repulsion = 26829.598761 eV
Total energy + Delta-G solvation = -3972.095797 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-42.19775 -41.31067 -39.45038 -37.19188 -35.97817 -35.56976 -33.79757 -32.70074
-31.07157 -30.39888 -29.59947 -29.07362 -26.71684 -26.20570 -25.52338 -23.62758
-23.07391 -21.40021 -20.84506 -20.18885 -19.56769 -19.16286 -18.73745 -17.92393
-17.43189 -16.97546 -16.67735 -16.47501 -15.80039 -15.62648 -15.52531 -15.24002
-15.06892 -14.77087 -14.72357 -14.46551 -14.28048 -13.88319 -13.73029 -13.54868
-13.47780 -13.25732 -13.11419 -12.91903 -12.90802 -12.82155 -12.68475 -12.59520
-12.35597 -12.12253 -11.96952 -11.78093 -11.69669 -11.51251 -11.32211 -10.86868
-10.69026 -10.54424 -9.53350 -9.49676 -9.01549 -8.87914 -7.80310 -5.04743
1.40946 1.44437 1.45775 1.55426 1.59510 1.81507 2.20629 2.27286
2.63359 3.41600 3.46039 3.55165 3.68621 3.77135 3.83948 3.99662
4.11568 4.15586 4.21143 4.26789 4.40110 4.42295 4.42865 4.47587
4.51447 4.58499 4.64329 4.66379 4.69151 4.77874 4.81645 4.86107
4.91043 4.95136 5.00832 5.05169 5.20499 5.32621 5.44435 5.48702
5.56161 5.59882 5.69727 5.90949 6.15795 6.38819 6.41879 6.45685
6.54728 7.13589 7.18153 7.49219 8.21340 8.43807 9.44214
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.012429 B = 0.003652 C = 0.003169
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2252.297162 B = 7664.528325 C = 8833.970156
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.151 3.849
3 H 0.078 0.922
4 C -0.135 4.135
5 C 0.517 3.483
6 O -0.577 6.577
7 N -0.597 5.597
8 C 0.111 3.889
9 C -0.127 4.127
10 C -0.109 4.109
11 C 0.175 3.825
12 C 0.075 3.925
13 O -0.567 6.567
14 N -0.715 5.715
15 C -0.175 4.175
16 H 0.095 0.905
17 C -0.096 4.096
18 N -0.982 5.982
19 Si 0.956 3.044
20 H -0.267 1.267
21 H -0.306 1.306
22 H -0.304 1.304
23 C 0.120 3.880
24 N -0.443 5.443
25 C -0.014 4.014
26 C -0.220 4.220
27 C -0.216 4.216
28 C -0.038 4.038
29 H 0.079 0.921
30 H 0.057 0.943
31 H 0.078 0.922
32 H 0.133 0.867
33 H 0.093 0.907
34 H 0.095 0.905
35 H 0.104 0.896
36 H 0.035 0.965
37 H 0.086 0.914
38 H 0.081 0.919
39 H 0.044 0.956
40 H 0.069 0.931
41 H 0.022 0.978
42 H 0.376 0.624
43 H 0.364 0.636
44 H 0.239 0.761
45 H 0.065 0.935
46 H 0.107 0.893
47 H 0.185 0.815
48 H 0.150 0.850
49 H 0.142 0.858
50 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.103 -16.194 2.122 20.328
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C 0.049 3.951
3 H 0.096 0.904
4 C -0.175 4.175
5 C 0.306 3.694
6 O -0.457 6.457
7 N -0.328 5.328
8 C -0.011 4.011
9 C -0.166 4.166
10 C -0.148 4.148
11 C 0.084 3.916
12 C -0.005 4.005
13 O -0.373 6.373
14 N -0.353 5.353
15 C -0.307 4.307
16 H 0.112 0.888
17 C -0.285 4.285
18 N -0.637 5.637
19 Si 0.789 3.211
20 H -0.191 1.191
21 H -0.234 1.234
22 H -0.232 1.232
23 C -0.003 4.003
24 N -0.119 5.119
25 C -0.144 4.144
26 C -0.244 4.244
27 C -0.241 4.241
28 C -0.168 4.168
29 H 0.098 0.902
30 H 0.077 0.923
31 H 0.097 0.903
32 H 0.151 0.849
33 H 0.111 0.889
34 H 0.113 0.887
35 H 0.122 0.878
36 H 0.054 0.946
37 H 0.105 0.895
38 H 0.099 0.901
39 H 0.063 0.937
40 H 0.087 0.913
41 H 0.041 0.959
42 H 0.223 0.777
43 H 0.195 0.805
44 H 0.048 0.952
45 H 0.084 0.916
46 H 0.125 0.875
47 H 0.202 0.798
48 H 0.167 0.833
49 H 0.159 0.841
50 H 0.175 0.825
Dipole moment (debyes) X Y Z Total
from point charges -12.136 -15.765 2.227 20.019
hybrid contribution 1.195 1.725 -0.314 2.122
sum -10.940 -14.040 1.913 17.902
Atomic orbital electron populations
1.22152 0.91868 1.03634 1.03408 1.20985 0.96507 0.95697 0.81953
0.90375 1.21914 1.03468 1.01437 0.90692 1.20642 0.78688 0.84971
0.85098 1.90665 1.42633 1.25848 1.86588 1.47956 1.54443 1.25292
1.05106 1.22001 0.92398 0.84741 1.01922 1.21765 0.97603 1.00536
0.96653 1.21752 1.00388 0.95777 0.96908 1.20408 0.90127 0.90936
0.90139 1.22639 0.87131 0.98007 0.92743 1.86728 1.32768 1.83957
1.33842 1.42577 1.18652 1.55325 1.18771 1.19851 0.93255 1.18412
0.99231 0.88791 1.25382 1.02129 1.03273 0.97724 1.69856 1.38163
1.41017 1.14671 0.85266 0.81245 0.76802 0.77813 1.19143 1.23424
1.23224 1.21639 0.95531 0.97338 0.85802 1.44397 1.38969 1.10781
1.17735 1.22204 1.06380 0.86009 0.99769 1.21168 1.04894 0.99706
0.98636 1.21139 1.07115 0.94297 1.01528 1.22126 1.02054 1.00487
0.92157 0.90215 0.92346 0.90287 0.84938 0.88874 0.88685 0.87762
0.94622 0.89519 0.90051 0.93717 0.91278 0.95934 0.77658 0.80455
0.95237 0.91639 0.87486 0.79760 0.83260 0.84065 0.82466
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.41 8.97 71.98 0.65 -2.76 16
2 C 0.15 3.83 2.67 44.99 0.12 3.95 16
3 H 0.08 2.45 7.88 -2.39 -0.02 2.43 16
4 C -0.13 -3.19 3.52 29.85 0.10 -3.08 16
5 C 0.52 15.88 7.42 87.66 0.65 16.53 16
6 O -0.58 -22.04 13.38 -3.03 -0.04 -22.08 16
7 N -0.60 -16.73 2.87 -818.84 -2.35 -19.08 16
8 C 0.11 2.38 6.34 86.36 0.55 2.93 16
9 C -0.13 -3.65 5.93 30.69 0.18 -3.46 16
10 C -0.11 -3.34 4.39 30.64 0.13 -3.20 16
11 C 0.17 6.14 0.68 3.69 0.00 6.14 16
12 C 0.08 2.39 6.08 71.98 0.44 2.83 16
13 O -0.57 -19.84 9.97 -148.98 -1.48 -21.33 16
14 N -0.72 -34.60 4.22 -302.94 -1.28 -35.88 16
15 C -0.18 -9.52 8.29 84.03 0.70 -8.82 16
16 H 0.09 5.06 5.31 -2.91 -0.02 5.04 16
17 C -0.10 -5.63 5.50 84.86 0.47 -5.17 16
18 N -0.98 -62.76 13.06 21.65 0.28 -62.48 16
19 Si 0.96 48.61 29.55 68.60 2.03 50.63 16
20 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16
21 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16
22 H -0.30 -15.61 7.11 99.48 0.71 -14.91 16
23 C 0.12 3.60 5.15 86.37 0.44 4.04 16
24 N -0.44 -10.82 2.62 -501.99 -1.31 -12.13 16
25 C -0.01 -0.29 10.45 83.21 0.87 0.58 16
26 C -0.22 -4.82 10.86 22.14 0.24 -4.58 16
27 C -0.22 -5.31 10.86 22.14 0.24 -5.06 16
28 C -0.04 -1.02 11.39 83.21 0.95 -0.07 16
29 H 0.08 1.37 7.91 -2.39 -0.02 1.35 16
30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16
31 H 0.08 2.08 5.95 -2.39 -0.01 2.06 16
32 H 0.13 2.10 7.86 -2.39 -0.02 2.08 16
33 H 0.09 2.44 7.69 -2.38 -0.02 2.42 16
34 H 0.09 1.73 5.93 -2.39 -0.01 1.72 16
35 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16
36 H 0.03 1.41 7.53 -2.38 -0.02 1.39 16
37 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16
38 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16
39 H 0.04 1.65 6.83 -2.39 -0.02 1.64 16
40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16
41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16
42 H 0.38 9.38 9.12 -74.06 -0.68 8.71 16
43 H 0.36 20.26 7.65 -92.71 -0.71 19.55 16
44 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16
45 H 0.07 2.37 7.01 -2.39 -0.02 2.35 16
46 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16
47 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16
48 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16
49 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16
50 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16
Total: -1.00 -77.33 389.66 2.14 -75.19
By element:
Atomic # 1 Polarization: 46.79 SS G_CDS: -0.43 Total: 46.36 kcal
Atomic # 6 Polarization: -5.93 SS G_CDS: 6.73 Total: 0.80 kcal
Atomic # 7 Polarization: -124.91 SS G_CDS: -4.66 Total: -129.56 kcal
Atomic # 8 Polarization: -41.89 SS G_CDS: -1.53 Total: -43.41 kcal
Atomic # 14 Polarization: 48.61 SS G_CDS: 2.03 Total: 50.63 kcal
Total: -77.33 2.14 -75.19 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001673702894.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.169 kcal
(2) G-P(sol) polarization free energy of solvation -77.331 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.163 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.187 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.019 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds