Wall clock time and date at job start Tue Mar 31 2020 18:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47764 * 2 1 4 4 N 1.46504 * 109.47612 * 239.99476 * 2 1 3 5 5 C 1.34778 * 119.99632 * 84.99754 * 4 2 1 6 6 O 1.21285 * 119.99772 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99843 * 180.02562 * 5 4 2 8 8 H 1.08992 * 109.64378 * 299.57952 * 7 5 4 9 9 C 1.53022 * 109.64123 * 60.00469 * 7 5 4 10 10 C 1.50070 * 110.14373 * 169.11986 * 9 7 5 11 11 C 1.29435 * 124.08243 * 342.86420 * 10 9 7 12 12 C 1.50071 * 124.07222 * 0.45312 * 11 10 9 13 13 C 1.53014 * 110.15194 * 342.90238 * 12 11 10 14 14 C 1.53010 * 109.47158 * 119.99884 * 2 1 3 15 15 C 1.53935 * 113.72848 * 300.00172 * 14 2 1 16 16 N 1.47962 * 86.30001 * 221.86345 * 15 14 2 17 17 C 1.46903 * 111.00056 * 137.63674 * 16 15 14 18 18 C 1.50700 * 109.47048 * 169.99964 * 17 16 15 19 19 O 1.21287 * 120.00092 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99908 * 180.02562 * 18 17 16 21 21 C 1.37093 * 120.00045 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99958 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00062 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00011 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99890 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.46808 * 90.00563 * 25 23 21 27 27 H 1.48498 * 109.47104 * 210.00361 * 25 23 21 28 28 H 1.48500 * 109.47382 * 330.00644 * 25 23 21 29 29 C 1.48308 * 90.62534 * 24.68684 * 16 15 14 30 30 H 1.09001 * 109.47087 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47529 * 300.00148 * 1 2 3 32 32 H 1.09002 * 109.46903 * 60.00721 * 1 2 3 33 33 H 0.96998 * 120.00343 * 265.00206 * 4 2 1 34 34 H 1.08995 * 109.35893 * 289.32712 * 9 7 5 35 35 H 1.08996 * 109.36160 * 48.91505 * 9 7 5 36 36 H 1.08006 * 117.95910 * 162.88842 * 10 9 7 37 37 H 1.08003 * 117.96982 * 180.47059 * 11 10 9 38 38 H 1.08997 * 109.36303 * 103.09287 * 12 11 10 39 39 H 1.08996 * 109.35785 * 222.82172 * 12 11 10 40 40 H 1.08997 * 109.62653 * 289.72576 * 13 12 11 41 41 H 1.09006 * 109.64553 * 169.10384 * 13 12 11 42 42 H 1.09000 * 113.00869 * 71.63426 * 14 2 1 43 43 H 1.09002 * 113.76229 * 336.23742 * 15 14 2 44 44 H 1.09005 * 113.75703 * 107.49267 * 15 14 2 45 45 H 1.08997 * 109.47397 * 290.00293 * 17 16 15 46 46 H 1.09006 * 109.46564 * 49.99948 * 17 16 15 47 47 H 0.97002 * 119.99746 * 0.02562 * 20 18 17 48 48 H 0.97004 * 120.00081 * 179.97438 * 24 23 21 49 49 H 1.09003 * 113.75437 * 220.98675 * 29 16 15 50 50 H 1.08998 * 113.85723 * 89.64375 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8590 1.1585 -2.4115 7 6 2.6490 -0.7290 -3.5876 8 1 3.6512 -1.1162 -3.4040 9 6 1.7070 -1.8837 -3.9349 10 6 2.0383 -2.4305 -5.2926 11 6 2.7513 -1.8040 -6.1727 12 6 3.3545 -0.4473 -5.9547 13 6 2.6773 0.2467 -4.7709 14 6 2.0400 -0.7213 1.2493 15 6 1.5822 -0.0738 2.5687 16 7 2.9593 -0.3146 3.0533 17 6 3.4649 0.8452 3.7999 18 6 4.7577 0.4786 4.4821 19 8 5.2133 -0.6386 4.3582 20 7 5.4077 1.3923 5.2300 21 6 6.5840 1.0590 5.8502 22 1 6.9901 0.0645 5.7392 23 6 7.2538 2.0008 6.6216 24 7 8.3816 1.6815 7.2156 25 14 6.5518 3.7213 6.8130 26 1 5.6515 3.7600 7.9933 27 1 7.6609 4.6900 7.0044 28 1 5.7849 4.0815 5.5934 29 6 3.4669 -0.3154 1.6599 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 2.2491 -1.6318 -1.1525 34 1 1.8140 -2.6735 -3.1914 35 1 0.6780 -1.5242 -3.9315 36 1 1.6578 -3.4076 -5.5517 37 1 2.9226 -2.2875 -7.1231 38 1 4.4196 -0.5541 -5.7493 39 1 3.2182 0.1570 -6.8515 40 1 1.6585 0.5230 -5.0425 41 1 3.2415 1.1384 -4.4972 42 1 1.8840 -1.7994 1.2124 43 1 1.3279 0.9820 2.4748 44 1 0.8230 -0.6483 3.0996 45 1 3.6390 1.6724 3.1119 46 1 2.7309 1.1435 4.5485 47 1 5.0431 2.2857 5.3293 48 1 8.8494 2.3391 7.7539 49 1 4.2152 -1.0838 1.4656 50 1 3.7647 0.6690 1.2986 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675281065.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:48 Heat of formation + Delta-G solvation = -29.438836 kcal Electronic energy + Delta-G solvation = -28619.596007 eV Core-core repulsion = 24647.698803 eV Total energy + Delta-G solvation = -3971.897203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.79027 -39.94991 -38.17782 -37.78082 -35.46498 -33.90942 -32.37704 -31.65717 -31.29856 -30.75823 -29.46041 -26.39610 -25.63357 -24.64571 -23.91407 -23.19613 -21.62302 -20.66640 -19.63518 -19.31453 -18.35723 -18.31190 -17.52011 -16.72388 -16.11282 -16.10540 -15.36861 -15.25743 -15.04801 -14.89069 -14.46406 -14.34524 -14.11236 -13.73921 -13.61962 -13.46615 -13.21069 -13.12766 -12.87049 -12.65421 -12.64431 -12.57241 -12.38164 -12.18272 -11.92232 -11.54354 -11.38785 -11.21440 -11.17231 -10.97526 -10.79103 -10.72064 -10.70608 -10.57947 -9.95541 -9.88334 -9.53928 -9.42325 -9.33959 -8.79348 -8.27241 -8.14991 -6.28701 -3.79855 1.87043 2.41101 2.87702 3.03986 3.08156 3.16196 3.76332 3.85667 4.12102 4.14861 4.22479 4.30670 4.43810 4.49338 4.71696 4.78656 4.80331 4.89275 4.97273 5.02192 5.10830 5.13548 5.15337 5.18075 5.21949 5.32054 5.36055 5.42357 5.46594 5.52258 5.53957 5.56122 5.56912 5.64554 5.72917 5.83212 5.86292 5.91362 5.95614 5.97768 6.11227 6.22095 6.30710 6.48583 6.51649 7.07679 7.25744 7.60889 7.99949 8.16966 8.63378 8.98209 9.45369 9.87497 10.84594 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017058 B = 0.002041 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.071138 B =13717.032115 C =14268.219545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.088 0.912 4 N -0.723 5.723 5 C 0.519 3.481 6 O -0.540 6.540 7 C -0.109 4.109 8 H 0.101 0.899 9 C -0.080 4.080 10 C -0.157 4.157 11 C -0.153 4.153 12 C -0.095 4.095 13 C -0.099 4.099 14 C -0.125 4.125 15 C 0.010 3.990 16 N -0.449 5.449 17 C 0.007 3.993 18 C 0.456 3.544 19 O -0.557 6.557 20 N -0.595 5.595 21 C -0.303 4.303 22 H 0.119 0.881 23 C 0.040 3.960 24 N -0.883 5.883 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.016 3.984 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.401 0.599 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.105 0.895 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.058 0.942 46 H 0.089 0.911 47 H 0.369 0.631 48 H 0.273 0.727 49 H 0.092 0.908 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.625 -4.129 -24.326 30.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.106 0.894 4 N -0.374 5.374 5 C 0.306 3.694 6 O -0.416 6.416 7 C -0.130 4.130 8 H 0.119 0.881 9 C -0.117 4.117 10 C -0.175 4.175 11 C -0.171 4.171 12 C -0.131 4.131 13 C -0.137 4.137 14 C -0.144 4.144 15 C -0.120 4.120 16 N -0.171 5.171 17 C -0.125 4.125 18 C 0.241 3.759 19 O -0.438 6.438 20 N -0.235 5.235 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.163 4.163 24 N -0.523 5.523 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.112 4.112 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.235 0.765 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.123 0.877 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.076 0.924 46 H 0.107 0.893 47 H 0.202 0.798 48 H 0.083 0.917 49 H 0.110 0.890 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.180 -4.519 -23.839 29.729 hybrid contribution -0.355 1.688 -0.076 1.726 sum -17.534 -2.831 -23.914 29.789 Atomic orbital electron populations 1.22133 0.94997 1.02229 1.02541 1.21047 0.94160 0.97198 0.83139 0.89423 1.46104 1.67517 1.14147 1.09611 1.20618 0.77195 0.87219 0.84411 1.90703 1.49800 1.16042 1.85066 1.21426 1.01175 0.97033 0.93398 0.88128 1.20401 0.99260 0.96381 0.95692 1.21963 1.00323 0.99938 0.95282 1.22112 0.99027 0.96844 0.99093 1.20519 0.99933 0.93985 0.98707 1.21420 1.02091 0.97431 0.92772 1.23303 0.96900 1.01226 0.92972 1.23962 0.94145 0.99938 0.93938 1.68482 1.02015 1.35737 1.10837 1.22518 0.97911 0.93035 0.99083 1.19593 0.86383 0.86220 0.83703 1.90556 1.68164 1.21085 1.63999 1.42230 1.23012 1.12145 1.46082 1.19418 0.96957 1.01510 1.25296 0.86337 1.25033 0.95967 0.98347 0.96910 1.69621 1.15447 1.35282 1.31964 0.86673 0.79409 0.84559 0.78745 1.19625 1.20200 1.19578 1.24061 0.96359 1.01632 0.89186 0.92320 0.91385 0.92245 0.76490 0.90443 0.90400 0.87583 0.87841 0.90577 0.90632 0.91178 0.90545 0.87720 0.91214 0.89022 0.92354 0.89282 0.79803 0.91665 0.89001 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.29 37.16 0.35 -0.95 16 2 C 0.15 1.36 2.41 -67.92 -0.16 1.20 16 3 H 0.09 0.99 7.37 -51.93 -0.38 0.61 16 4 N -0.72 -5.87 4.98 -53.80 -0.27 -6.14 16 5 C 0.52 5.12 7.10 -10.99 -0.08 5.04 16 6 O -0.54 -7.44 15.56 5.55 0.09 -7.35 16 7 C -0.11 -0.81 2.58 -91.56 -0.24 -1.04 16 8 H 0.10 0.67 8.13 -51.93 -0.42 0.25 16 9 C -0.08 -0.47 5.27 -28.18 -0.15 -0.62 16 10 C -0.16 -0.93 9.80 -35.90 -0.35 -1.29 16 11 C -0.15 -0.93 9.80 -35.90 -0.35 -1.28 16 12 C -0.09 -0.59 6.12 -28.18 -0.17 -0.76 16 13 C -0.10 -0.79 4.69 -26.52 -0.12 -0.91 16 14 C -0.12 -1.22 3.49 -89.68 -0.31 -1.53 16 15 C 0.01 0.11 6.56 -2.77 -0.02 0.09 16 16 N -0.45 -7.00 5.66 -238.67 -1.35 -8.35 16 17 C 0.01 0.11 5.28 -4.97 -0.03 0.09 16 18 C 0.46 10.62 7.83 -10.98 -0.09 10.54 16 19 O -0.56 -15.39 16.01 5.55 0.09 -15.30 16 20 N -0.59 -14.48 5.09 -10.97 -0.06 -14.53 16 21 C -0.30 -8.72 10.16 -14.94 -0.15 -8.87 16 22 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -26.10 13.96 55.50 0.77 -25.33 16 25 Si 0.88 19.67 27.74 -169.99 -4.71 14.96 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 28 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 29 C 0.02 0.22 7.52 -2.58 -0.02 0.20 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.50 7.43 -51.93 -0.39 0.12 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.40 2.36 8.27 -40.82 -0.34 2.02 16 34 H 0.08 0.34 7.89 -51.93 -0.41 -0.07 16 35 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 36 H 0.11 0.52 8.06 -52.48 -0.42 0.09 16 37 H 0.10 0.52 8.06 -52.48 -0.42 0.10 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 41 H 0.08 0.69 7.89 -51.93 -0.41 0.28 16 42 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.68 7.85 -51.93 -0.41 0.27 16 44 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 0.87 7.39 -51.93 -0.38 0.49 16 46 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 47 H 0.37 7.90 5.76 -40.82 -0.24 7.66 16 48 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 49 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 50 H 0.07 0.92 7.31 -51.93 -0.38 0.54 16 LS Contribution 401.55 15.07 6.05 6.05 Total: -1.00 -35.57 401.55 -9.76 -45.33 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -8.38 Total: 9.74 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.99 Total: 0.92 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.90 Total: -54.35 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.18 Total: -22.65 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.71 Total: 14.96 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.57 -9.76 -45.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675281065.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.894 kcal (2) G-P(sol) polarization free energy of solvation -35.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds