Wall clock time and date at job start Tue Mar 31 2020 18:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47764 * 2 1 4 4 N 1.46504 * 109.47612 * 239.99476 * 2 1 3 5 5 C 1.34778 * 119.99632 * 84.99754 * 4 2 1 6 6 O 1.21285 * 119.99772 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99843 * 180.02562 * 5 4 2 8 8 H 1.08992 * 109.64378 * 299.57952 * 7 5 4 9 9 C 1.53022 * 109.64123 * 60.00469 * 7 5 4 10 10 C 1.50070 * 110.14373 * 169.11986 * 9 7 5 11 11 C 1.29435 * 124.08243 * 342.86420 * 10 9 7 12 12 C 1.50071 * 124.07222 * 0.45312 * 11 10 9 13 13 C 1.53014 * 110.15194 * 342.90238 * 12 11 10 14 14 C 1.53010 * 109.47158 * 119.99884 * 2 1 3 15 15 C 1.53935 * 113.72848 * 300.00172 * 14 2 1 16 16 N 1.47962 * 86.30001 * 221.86345 * 15 14 2 17 17 C 1.46903 * 111.00056 * 137.63674 * 16 15 14 18 18 C 1.50700 * 109.47048 * 169.99964 * 17 16 15 19 19 O 1.21287 * 120.00092 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99908 * 180.02562 * 18 17 16 21 21 C 1.37093 * 120.00045 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99958 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00062 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00011 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99890 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.46808 * 90.00563 * 25 23 21 27 27 H 1.48498 * 109.47104 * 210.00361 * 25 23 21 28 28 H 1.48500 * 109.47382 * 330.00644 * 25 23 21 29 29 C 1.48308 * 90.62534 * 24.68684 * 16 15 14 30 30 H 1.09001 * 109.47087 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47529 * 300.00148 * 1 2 3 32 32 H 1.09002 * 109.46903 * 60.00721 * 1 2 3 33 33 H 0.96998 * 120.00343 * 265.00206 * 4 2 1 34 34 H 1.08995 * 109.35893 * 289.32712 * 9 7 5 35 35 H 1.08996 * 109.36160 * 48.91505 * 9 7 5 36 36 H 1.08006 * 117.95910 * 162.88842 * 10 9 7 37 37 H 1.08003 * 117.96982 * 180.47059 * 11 10 9 38 38 H 1.08997 * 109.36303 * 103.09287 * 12 11 10 39 39 H 1.08996 * 109.35785 * 222.82172 * 12 11 10 40 40 H 1.08997 * 109.62653 * 289.72576 * 13 12 11 41 41 H 1.09006 * 109.64553 * 169.10384 * 13 12 11 42 42 H 1.09000 * 113.00869 * 71.63426 * 14 2 1 43 43 H 1.09002 * 113.76229 * 336.23742 * 15 14 2 44 44 H 1.09005 * 113.75703 * 107.49267 * 15 14 2 45 45 H 1.08997 * 109.47397 * 290.00293 * 17 16 15 46 46 H 1.09006 * 109.46564 * 49.99948 * 17 16 15 47 47 H 0.97002 * 119.99746 * 0.02562 * 20 18 17 48 48 H 0.97004 * 120.00081 * 179.97438 * 24 23 21 49 49 H 1.09003 * 113.75437 * 220.98675 * 29 16 15 50 50 H 1.08998 * 113.85723 * 89.64375 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8590 1.1585 -2.4115 7 6 2.6490 -0.7290 -3.5876 8 1 3.6512 -1.1162 -3.4040 9 6 1.7070 -1.8837 -3.9349 10 6 2.0383 -2.4305 -5.2926 11 6 2.7513 -1.8040 -6.1727 12 6 3.3545 -0.4473 -5.9547 13 6 2.6773 0.2467 -4.7709 14 6 2.0400 -0.7213 1.2493 15 6 1.5822 -0.0738 2.5687 16 7 2.9593 -0.3146 3.0533 17 6 3.4649 0.8452 3.7999 18 6 4.7577 0.4786 4.4821 19 8 5.2133 -0.6386 4.3582 20 7 5.4077 1.3923 5.2300 21 6 6.5840 1.0590 5.8502 22 1 6.9901 0.0645 5.7392 23 6 7.2538 2.0008 6.6216 24 7 8.3816 1.6815 7.2156 25 14 6.5518 3.7213 6.8130 26 1 5.6515 3.7600 7.9933 27 1 7.6609 4.6900 7.0044 28 1 5.7849 4.0815 5.5934 29 6 3.4669 -0.3154 1.6599 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 2.2491 -1.6318 -1.1525 34 1 1.8140 -2.6735 -3.1914 35 1 0.6780 -1.5242 -3.9315 36 1 1.6578 -3.4076 -5.5517 37 1 2.9226 -2.2875 -7.1231 38 1 4.4196 -0.5541 -5.7493 39 1 3.2182 0.1570 -6.8515 40 1 1.6585 0.5230 -5.0425 41 1 3.2415 1.1384 -4.4972 42 1 1.8840 -1.7994 1.2124 43 1 1.3279 0.9820 2.4748 44 1 0.8230 -0.6483 3.0996 45 1 3.6390 1.6724 3.1119 46 1 2.7309 1.1435 4.5485 47 1 5.0431 2.2857 5.3293 48 1 8.8494 2.3391 7.7539 49 1 4.2152 -1.0838 1.4656 50 1 3.7647 0.6690 1.2986 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675281065.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:47 Heat of formation + Delta-G solvation = -56.847057 kcal Electronic energy + Delta-G solvation = -28620.784516 eV Core-core repulsion = 24647.698803 eV Total energy + Delta-G solvation = -3973.085713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.66101 -40.92203 -39.76961 -38.58755 -36.37474 -35.93719 -33.77831 -33.10697 -31.91610 -31.52965 -30.43697 -27.65255 -26.90226 -25.64719 -24.90567 -23.92091 -22.54746 -21.43566 -21.24608 -20.49145 -20.19551 -18.85988 -18.28027 -17.79428 -17.53469 -16.89098 -16.69302 -16.51195 -16.17290 -16.02983 -15.60832 -15.25687 -14.96856 -14.82751 -14.66757 -14.46809 -14.38295 -14.17531 -13.98209 -13.88095 -13.68668 -13.46976 -13.16406 -13.09819 -13.03755 -12.70920 -12.67815 -12.43656 -12.00085 -11.99091 -11.84406 -11.81162 -11.67652 -11.63809 -11.51912 -11.30557 -10.65987 -10.46772 -10.25695 -10.11845 -9.86667 -9.61713 -8.42646 -6.03384 1.28285 1.33810 1.42535 1.42891 1.64864 1.95107 2.17469 2.21310 2.63546 3.11898 3.19868 3.40535 3.59123 3.64718 3.73745 3.86456 4.05440 4.16048 4.21077 4.22902 4.29877 4.34466 4.38438 4.41410 4.45806 4.46941 4.49304 4.52599 4.61533 4.73925 4.77171 4.82633 4.85462 4.92536 4.98627 5.05293 5.06673 5.21182 5.26615 5.32098 5.34406 5.42001 5.52361 5.57840 5.78129 5.90180 6.03372 6.07170 6.57703 6.58805 6.87318 7.27811 7.38775 7.96758 8.75132 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017058 B = 0.002041 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.071138 B =13717.032115 C =14268.219545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 H 0.067 0.933 4 N -0.713 5.713 5 C 0.517 3.483 6 O -0.583 6.583 7 C -0.105 4.105 8 H 0.110 0.890 9 C -0.077 4.077 10 C -0.161 4.161 11 C -0.162 4.162 12 C -0.092 4.092 13 C -0.099 4.099 14 C -0.099 4.099 15 C 0.018 3.982 16 N -0.486 5.486 17 C 0.019 3.981 18 C 0.452 3.548 19 O -0.609 6.609 20 N -0.595 5.595 21 C -0.328 4.328 22 H 0.054 0.946 23 C -0.017 4.017 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.255 1.255 27 H -0.274 1.274 28 H -0.234 1.234 29 C 0.008 3.992 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.414 0.586 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.118 0.882 43 H 0.088 0.912 44 H 0.108 0.892 45 H 0.084 0.916 46 H 0.120 0.880 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.069 0.931 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.552 -3.040 -25.191 32.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.050 3.950 3 H 0.085 0.915 4 N -0.364 5.364 5 C 0.305 3.695 6 O -0.463 6.463 7 C -0.126 4.126 8 H 0.128 0.872 9 C -0.114 4.114 10 C -0.179 4.179 11 C -0.180 4.180 12 C -0.129 4.129 13 C -0.137 4.137 14 C -0.118 4.118 15 C -0.111 4.111 16 N -0.208 5.208 17 C -0.112 4.112 18 C 0.239 3.761 19 O -0.493 6.493 20 N -0.237 5.237 21 C -0.457 4.457 22 H 0.072 0.928 23 C -0.215 4.215 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.180 1.180 27 H -0.199 1.199 28 H -0.157 1.157 29 C -0.121 4.121 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.250 0.750 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.136 0.864 43 H 0.107 0.893 44 H 0.126 0.874 45 H 0.102 0.898 46 H 0.137 0.863 47 H 0.224 0.776 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.133 -3.463 -24.715 32.065 hybrid contribution 0.617 1.210 0.181 1.370 sum -19.516 -2.253 -24.534 31.430 Atomic orbital electron populations 1.22073 0.93607 1.03185 1.02359 1.20924 0.95051 0.96029 0.83029 0.91527 1.46039 1.66705 1.14709 1.08969 1.21031 0.76443 0.86736 0.85287 1.90683 1.51874 1.17977 1.85774 1.21428 1.01953 0.97223 0.91984 0.87197 1.20411 0.98411 0.96104 0.96468 1.22116 1.00178 1.00504 0.95053 1.22238 0.99330 0.96644 0.99785 1.20505 0.99983 0.94292 0.98125 1.21376 1.01259 0.97227 0.93848 1.23120 0.93757 1.01957 0.92955 1.24079 0.91832 1.01504 0.93668 1.68436 1.04877 1.35767 1.11765 1.22452 0.94528 0.94282 0.99985 1.20938 0.87783 0.85100 0.82229 1.90528 1.69955 1.23449 1.65365 1.42076 1.21911 1.13397 1.46296 1.18991 0.99400 0.99640 1.27680 0.92794 1.26124 0.95897 1.04064 0.95416 1.69804 1.17330 1.37646 1.32735 0.85360 0.79092 0.76443 0.80585 1.17968 1.19936 1.15724 1.24078 0.98086 1.01032 0.88920 0.90761 0.90248 0.93775 0.74960 0.88501 0.90871 0.86198 0.86697 0.90187 0.90022 0.92368 0.92301 0.86359 0.89350 0.87371 0.89818 0.86253 0.77591 0.91138 0.91292 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.29 71.98 0.67 -1.39 16 2 C 0.15 2.51 2.41 44.99 0.11 2.62 16 3 H 0.07 1.42 7.37 -2.39 -0.02 1.40 16 4 N -0.71 -10.47 4.98 -442.51 -2.21 -12.68 16 5 C 0.52 9.90 7.10 87.66 0.62 10.53 16 6 O -0.58 -16.25 15.56 -3.05 -0.05 -16.29 16 7 C -0.10 -1.46 2.58 -11.40 -0.03 -1.49 16 8 H 0.11 1.34 8.13 -2.39 -0.02 1.32 16 9 C -0.08 -0.77 5.27 29.66 0.16 -0.61 16 10 C -0.16 -1.60 9.80 27.05 0.27 -1.33 16 11 C -0.16 -1.72 9.80 27.05 0.27 -1.46 16 12 C -0.09 -1.08 6.12 29.66 0.18 -0.90 16 13 C -0.10 -1.57 4.69 30.73 0.14 -1.43 16 14 C -0.10 -1.68 3.49 -10.15 -0.04 -1.72 16 15 C 0.02 0.32 6.56 86.41 0.57 0.89 16 16 N -0.49 -14.27 5.66 -909.03 -5.15 -19.41 16 17 C 0.02 0.61 5.28 85.56 0.45 1.06 16 18 C 0.45 21.14 7.83 87.66 0.69 21.83 16 19 O -0.61 -35.04 16.01 -3.05 -0.05 -35.09 16 20 N -0.59 -28.88 5.09 -306.99 -1.56 -30.44 16 21 C -0.33 -19.65 10.16 84.04 0.85 -18.79 16 22 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16 23 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 24 N -0.93 -57.13 13.96 21.66 0.30 -56.83 16 25 Si 0.97 39.53 27.74 68.60 1.90 41.44 16 26 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 28 H -0.23 -8.14 6.52 99.48 0.65 -7.49 16 29 C 0.01 0.20 7.52 86.34 0.65 0.85 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.89 7.43 -2.39 -0.02 0.88 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.41 3.96 8.27 -92.71 -0.77 3.19 16 34 H 0.10 0.59 7.89 -2.39 -0.02 0.57 16 35 H 0.07 0.83 8.10 -2.39 -0.02 0.81 16 36 H 0.12 0.87 8.06 -2.91 -0.02 0.85 16 37 H 0.12 0.95 8.06 -2.91 -0.02 0.93 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 1.04 8.12 -2.39 -0.02 1.02 16 41 H 0.06 1.12 7.89 -2.38 -0.02 1.10 16 42 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.09 1.32 7.85 -2.39 -0.02 1.30 16 44 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.08 2.23 7.39 -2.39 -0.02 2.22 16 46 H 0.12 3.05 8.08 -2.38 -0.02 3.03 16 47 H 0.39 15.64 5.76 -92.71 -0.53 15.11 16 48 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 49 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.07 1.74 7.31 -2.39 -0.02 1.72 16 Total: -1.00 -84.34 401.55 -1.20 -85.54 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: -0.42 Total: 35.61 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 6.02 Total: 8.17 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -8.61 Total: -119.37 kcal Atomic # 8 Polarization: -51.29 SS G_CDS: -0.10 Total: -51.39 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 1.90 Total: 41.44 kcal Total: -84.34 -1.20 -85.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675281065.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.688 kcal (2) G-P(sol) polarization free energy of solvation -84.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds