Wall clock time and date at job start Tue Mar 31 2020 19:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46985 * 2 1 4 4 O 1.42902 * 109.47036 * 119.99342 * 2 1 3 5 5 C 1.35668 * 116.99713 * 150.00185 * 4 2 1 6 6 C 1.39292 * 119.61493 * 180.02562 * 5 4 2 7 7 C 1.38326 * 119.30318 * 180.02562 * 6 5 4 8 8 C 1.38780 * 118.56346 * 0.02562 * 7 6 5 9 9 C 1.39125 * 119.18811 * 359.97438 * 8 7 6 10 10 C 1.48151 * 119.69457 * 179.97438 * 9 8 7 11 11 O 1.21521 * 119.99469 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00274 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00256 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.46596 * 325.00243 * 13 12 10 15 15 C 1.53006 * 109.47249 * 84.99846 * 13 12 10 16 16 C 1.52997 * 109.47473 * 205.00145 * 13 12 10 17 17 C 1.53001 * 109.47049 * 64.99864 * 16 13 12 18 18 C 1.53002 * 109.46964 * 180.02562 * 17 16 13 19 19 N 1.46504 * 109.46727 * 180.02562 * 18 17 16 20 20 C 1.36940 * 119.99562 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99899 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99756 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99952 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99993 * 0.02562 * 22 20 19 25 25 H 1.48492 * 109.47280 * 89.99597 * 24 22 20 26 26 H 1.48499 * 109.46811 * 209.99599 * 24 22 20 27 27 H 1.48501 * 109.47190 * 329.99205 * 24 22 20 28 28 N 1.31895 * 119.61953 * 0.29658 * 5 4 2 29 29 H 1.08993 * 109.47422 * 300.00032 * 1 2 3 30 30 H 1.09001 * 109.46798 * 60.00540 * 1 2 3 31 31 H 1.09005 * 109.47138 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47872 * 239.99856 * 2 1 3 33 33 H 1.08997 * 109.47337 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46912 * 299.99390 * 3 2 1 35 35 H 1.09001 * 109.47398 * 59.99878 * 3 2 1 36 36 H 1.07998 * 120.34885 * 0.04156 * 6 5 4 37 37 H 1.08006 * 120.71565 * 179.97438 * 7 6 5 38 38 H 1.08002 * 120.40668 * 180.02562 * 8 7 6 39 39 H 0.97005 * 120.00370 * 0.02562 * 12 10 9 40 40 H 1.09001 * 109.47002 * 60.00085 * 15 13 12 41 41 H 1.08993 * 109.46955 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.47050 * 300.00351 * 15 13 12 43 43 H 1.08998 * 109.47192 * 185.00019 * 16 13 12 44 44 H 1.08998 * 109.46934 * 304.99865 * 16 13 12 45 45 H 1.08998 * 109.47250 * 300.00119 * 17 16 13 46 46 H 1.08998 * 109.47252 * 60.00195 * 17 16 13 47 47 H 1.09002 * 109.46615 * 299.99612 * 18 17 16 48 48 H 1.08998 * 109.47254 * 59.99857 * 18 17 16 49 49 H 0.96997 * 120.00417 * 0.02562 * 19 18 17 50 50 H 0.96997 * 119.99979 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 3.1986 -1.3128 1.0654 6 6 3.7141 -1.9874 2.1696 7 6 4.9306 -2.6366 2.0592 8 6 5.5987 -2.5916 0.8436 9 6 5.0272 -1.8996 -0.2195 10 6 5.7311 -1.8439 -1.5220 11 8 6.8022 -2.4015 -1.6580 12 7 5.1834 -1.1749 -2.5558 13 6 5.8791 -1.1203 -3.8439 14 1 6.9551 -1.0801 -3.6742 15 6 5.5380 -2.3681 -4.6612 16 6 5.4366 0.1279 -4.6101 17 6 5.8884 1.3781 -3.8527 18 6 5.4453 2.6263 -4.6187 19 7 5.8785 3.8234 -3.8937 20 6 5.5932 5.0665 -4.3923 21 1 5.0484 5.1643 -5.3198 22 6 6.0031 6.2008 -3.7052 23 7 5.7293 7.3956 -4.1847 24 14 6.9447 6.0315 -2.1008 25 1 8.4013 5.9798 -2.3847 26 1 6.6513 7.1976 -1.2294 27 1 6.5298 4.7826 -1.4127 28 7 3.8588 -1.2838 -0.0761 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8900 36 1 3.1696 -2.0037 3.1022 37 1 5.3517 -3.1663 2.9010 38 1 6.5502 -3.0884 0.7241 39 1 4.3285 -0.7295 -2.4471 40 1 4.4620 -2.4084 -4.8308 41 1 6.0560 -2.3276 -5.6193 42 1 5.8533 -3.2573 -4.1153 43 1 5.8855 0.1227 -5.6034 44 1 4.3505 0.1315 -4.7023 45 1 5.4395 1.3833 -2.8595 46 1 6.9745 1.3744 -3.7606 47 1 5.8940 2.6213 -5.6120 48 1 4.3592 2.6298 -4.7105 49 1 6.3681 3.7356 -3.0610 50 1 6.0161 8.1882 -3.7047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675996860.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:41 Heat of formation + Delta-G solvation = -41.494088 kcal Electronic energy + Delta-G solvation = -29267.381718 eV Core-core repulsion = 25294.961759 eV Total energy + Delta-G solvation = -3972.419958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.21258 -39.83795 -38.34896 -36.84030 -35.03437 -33.59211 -33.23034 -32.38962 -31.25459 -30.49259 -29.69575 -27.45979 -25.98668 -25.27495 -23.88810 -22.72397 -21.56467 -21.37869 -20.96268 -20.62056 -18.90503 -17.88789 -17.49812 -16.49256 -16.34102 -16.09039 -16.02012 -15.20883 -14.83869 -14.70299 -14.58455 -14.33395 -14.15036 -13.88947 -13.68030 -13.65953 -13.29689 -12.96873 -12.66995 -12.56667 -12.51121 -12.47020 -12.24905 -12.20433 -12.09582 -11.71154 -11.30731 -11.17984 -11.05474 -10.96061 -10.91099 -10.64772 -10.47403 -10.40279 -10.33796 -10.10536 -9.83889 -9.58282 -9.22114 -8.88077 -8.84439 -7.21420 -5.76103 -3.11088 0.33088 0.90830 2.53363 2.66542 2.90440 3.38257 3.41930 3.45796 3.55646 3.71797 4.45794 4.57837 4.60226 4.61112 4.65677 4.68341 4.73650 4.86064 4.95270 4.98623 5.08415 5.12531 5.35603 5.36508 5.42432 5.48488 5.52886 5.54580 5.55081 5.60310 5.62669 5.68771 5.76224 5.84803 5.87014 5.93389 6.01528 6.02496 6.08770 6.09878 6.12433 6.30344 6.38684 6.76287 6.79872 6.91223 7.20562 7.47584 8.00664 8.00976 8.43398 9.22834 9.95604 10.15755 11.42489 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008464 B = 0.003412 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3307.327008 B = 8204.762198 C = 9586.050776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.082 3.918 3 C -0.172 4.172 4 O -0.300 6.300 5 C 0.327 3.673 6 C -0.170 4.170 7 C -0.047 4.047 8 C -0.151 4.151 9 C 0.121 3.879 10 C 0.571 3.429 11 O -0.532 6.532 12 N -0.700 5.700 13 C 0.138 3.862 14 H 0.091 0.909 15 C -0.162 4.162 16 C -0.122 4.122 17 C -0.131 4.131 18 C 0.158 3.842 19 N -0.758 5.758 20 C -0.243 4.243 21 H 0.090 0.910 22 C 0.004 3.996 23 N -0.935 5.935 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.278 1.278 28 N -0.517 5.517 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.410 0.590 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.026 0.974 48 H 0.025 0.975 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.575 -24.901 10.589 28.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.026 3.974 3 C -0.229 4.229 4 O -0.208 6.208 5 C 0.146 3.854 6 C -0.191 4.191 7 C -0.072 4.072 8 C -0.173 4.173 9 C -0.016 4.016 10 C 0.356 3.644 11 O -0.409 6.409 12 N -0.351 5.351 13 C 0.034 3.966 14 H 0.109 0.891 15 C -0.220 4.220 16 C -0.161 4.161 17 C -0.169 4.169 18 C 0.031 3.969 19 N -0.403 5.403 20 C -0.373 4.373 21 H 0.108 0.892 22 C -0.192 4.192 23 N -0.583 5.583 24 Si 0.714 3.286 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.204 1.204 28 N -0.244 5.244 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.168 0.832 39 H 0.246 0.754 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.044 0.956 48 H 0.043 0.957 49 H 0.193 0.807 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.432 -24.612 9.783 27.508 hybrid contribution 0.585 0.013 1.791 1.884 sum -6.848 -24.599 11.574 28.035 Atomic orbital electron populations 1.21916 0.92687 1.02825 1.03346 1.22419 0.94558 0.93013 0.87385 1.22248 1.02410 0.95075 1.03203 1.86312 1.31127 1.64233 1.39105 1.19724 0.86222 0.90138 0.89323 1.21317 0.97757 1.01024 0.98968 1.21449 0.92803 0.95471 0.97524 1.21978 1.02150 1.00601 0.92531 1.20811 0.90610 0.95294 0.94894 1.17849 0.84550 0.79100 0.82928 1.90788 1.21102 1.45775 1.83189 1.45968 1.24975 1.53104 1.11043 1.21144 0.98160 0.95217 0.82057 0.89124 1.22168 1.01870 0.97809 1.00159 1.21838 1.01851 0.92839 0.99535 1.21794 1.01299 0.94227 0.99539 1.20619 0.96955 0.84962 0.94400 1.42737 1.68886 1.02323 1.26375 1.19079 1.30316 0.81732 1.06212 0.89240 1.24664 1.00885 0.95088 0.98534 1.69702 1.51677 0.96749 1.40203 0.86552 0.80403 0.76822 0.84800 1.21044 1.21707 1.20425 1.67098 1.09398 1.22318 1.25548 0.91579 0.90138 0.91975 0.89368 0.91824 0.90405 0.91923 0.83608 0.83330 0.83196 0.75397 0.92414 0.91312 0.92275 0.89913 0.91178 0.92093 0.91977 0.95614 0.95743 0.80745 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.56 37.16 0.36 -0.79 16 2 C 0.08 0.80 3.10 -26.73 -0.08 0.71 16 3 C -0.17 -1.84 9.53 37.16 0.35 -1.49 16 4 O -0.30 -3.22 9.76 -18.71 -0.18 -3.41 16 5 C 0.33 3.54 7.46 -17.13 -0.13 3.41 16 6 C -0.17 -1.44 10.05 -39.16 -0.39 -1.83 16 7 C -0.05 -0.35 10.16 -39.35 -0.40 -0.75 16 8 C -0.15 -1.48 9.63 -39.05 -0.38 -1.86 16 9 C 0.12 1.42 6.75 -83.02 -0.56 0.86 16 10 C 0.57 7.46 7.78 -12.19 -0.09 7.37 16 11 O -0.53 -8.17 15.98 5.35 0.09 -8.09 16 12 N -0.70 -8.10 4.52 -54.65 -0.25 -8.35 16 13 C 0.14 1.54 2.57 -67.93 -0.17 1.36 16 14 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 15 C -0.16 -1.54 9.48 37.16 0.35 -1.19 16 16 C -0.12 -1.38 4.75 -26.73 -0.13 -1.50 16 17 C -0.13 -1.96 5.22 -26.73 -0.14 -2.10 16 18 C 0.16 3.03 6.26 -4.04 -0.03 3.01 16 19 N -0.76 -18.49 5.41 -59.90 -0.32 -18.81 16 20 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 21 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 22 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 23 N -0.94 -29.76 13.97 55.49 0.78 -28.99 16 24 Si 0.88 22.65 27.73 -169.99 -4.71 17.93 16 25 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 27 H -0.28 -6.76 6.52 56.52 0.37 -6.40 16 28 N -0.52 -5.95 7.82 -9.87 -0.08 -6.02 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.87 6.98 -51.93 -0.36 0.51 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 38 H 0.15 1.37 7.63 -52.49 -0.40 0.97 16 39 H 0.41 4.45 7.93 -40.82 -0.32 4.12 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.94 7.75 -51.93 -0.40 0.54 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.36 8.66 5.53 -40.82 -0.23 8.44 16 50 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 414.07 15.07 6.24 6.24 Total: -1.00 -34.30 414.07 -8.60 -42.91 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -8.46 Total: 8.55 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.69 Total: -1.97 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.13 Total: -62.17 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.10 Total: -11.49 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.71 Total: 17.93 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.30 -8.60 -42.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675996860.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.412 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds